0.019535 0.000000 0.007905 0.000000 0.014257 0.000000 0.000000 0.000000 0.021692 0.00000 0.00000 0.00000 Lewis, H.A. Furlong, E.B. Bergseid, M.G. Sanderson, W.E. Buchanan, S.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 112.03 90.00 51.190 70.140 49.730 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK Structure STRUE6 2005 0969-2126 9 527 537 10.1016/S0969-2126(01)00613-X 11435117 A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs. 2001 US Proteins PSFGEY 0867 0887-3585 60 787 796 10.1002/prot.20541 16021622 Structural analysis of a set of proteins resulting from a bacterial genomics project 2005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2000-09-05 MARRESEARCH Graphite SINGLE WAVELENGTH M x-ray 1 0.9641 1.0 32-ID APS 0.9641 SYNCHROTRON APS BEAMLINE 32-ID 18719.035 AUTOINDUCER-2 PRODUCTION PROTEIN LUXS 1 man polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 46 nat water AI-2 SYNTHESIS PROTEIN, CONSERVED HYPOTHETICAL PROTEIN no yes (MSE)PD(MSE)ANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGY(MSE)R DHLEGVVDVSP(MSE)GCRTG(MSE)Y(MSE)AVIGEPDEQGV(MSE)KAFEAALKDTAGHDQPIPGVSELECGNYRDHD LAAARQHARDVLDQGLKVQETILLERGSHHHHHH MPDMANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPM GCRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLERGS HHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Deinococcus Escherichia sample 1299 Deinococcus radiodurans 562 Escherichia coli 1 2.44 49.3 VAPOR DIFFUSION, HANGING DROP 6.5 PEG MME 5000, MES, BME, NaCl, , pH 6.5, VAPOR DIFFUSION, HANGING DROP at 277K, temperature 277.0K 277.0 software repository Initial release Version format compliance Derived calculations Version format compliance Refinement description 1 0 2001-06-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 RCSB Y RCSB 2001-05-14 REL REL ZN ZINC ION HOH water ZN 1 2 ZN ZN 167 A HOH 2 3 HOH HOH 168 A HOH 3 3 HOH HOH 169 A HOH 4 3 HOH HOH 170 A HOH 5 3 HOH HOH 171 A HOH 6 3 HOH HOH 172 A HOH 7 3 HOH HOH 173 A HOH 8 3 HOH HOH 174 A HOH 9 3 HOH HOH 175 A HOH 10 3 HOH HOH 176 A HOH 11 3 HOH HOH 177 A HOH 12 3 HOH HOH 178 A HOH 13 3 HOH HOH 179 A HOH 14 3 HOH HOH 180 A HOH 15 3 HOH HOH 181 A HOH 16 3 HOH HOH 182 A HOH 17 3 HOH HOH 183 A HOH 18 3 HOH HOH 184 A HOH 19 3 HOH HOH 185 A HOH 20 3 HOH HOH 186 A HOH 21 3 HOH HOH 187 A HOH 22 3 HOH HOH 188 A HOH 23 3 HOH HOH 189 A HOH 24 3 HOH HOH 190 A HOH 25 3 HOH HOH 191 A HOH 26 3 HOH HOH 192 A HOH 27 3 HOH HOH 193 A HOH 28 3 HOH HOH 194 A HOH 29 3 HOH HOH 195 A HOH 30 3 HOH HOH 196 A HOH 31 3 HOH HOH 197 A HOH 32 3 HOH HOH 198 A HOH 33 3 HOH HOH 199 A HOH 34 3 HOH HOH 200 A HOH 35 3 HOH HOH 201 A HOH 36 3 HOH HOH 202 A HOH 37 3 HOH HOH 203 A HOH 38 3 HOH HOH 204 A HOH 39 3 HOH HOH 205 A HOH 40 3 HOH HOH 206 A HOH 41 3 HOH HOH 207 A HOH 42 3 HOH HOH 208 A HOH 43 3 HOH HOH 209 A HOH 44 3 HOH HOH 210 A HOH 45 3 HOH HOH 211 A HOH 46 3 HOH HOH 212 A HOH 47 3 HOH HOH 213 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A VAL 7 n 7 VAL 7 A GLU 8 n 8 GLU 8 A SER 9 n 9 SER 9 A PHE 10 n 10 PHE 10 A ASP 11 n 11 ASP 11 A LEU 12 n 12 LEU 12 A ASP 13 n 13 ASP 13 A HIS 14 n 14 HIS 14 A THR 15 n 15 THR 15 A LYS 16 n 16 LYS 16 A VAL 17 n 17 VAL 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A PRO 20 n 20 PRO 20 A TYR 21 n 21 TYR 21 A VAL 22 n 22 VAL 22 A ARG 23 n 23 ARG 23 A LEU 24 n 24 LEU 24 A ALA 25 n 25 ALA 25 A GLY 26 n 26 GLY 26 A VAL 27 n 27 VAL 27 A LYS 28 n 28 LYS 28 A THR 29 n 29 THR 29 A THR 30 n 30 THR 30 A PRO 31 n 31 PRO 31 A LYS 32 n 32 LYS 32 A GLY 33 n 33 GLY 33 A ASP 34 n 34 ASP 34 A GLN 35 n 35 GLN 35 A ILE 36 n 36 ILE 36 A SER 37 n 37 SER 37 A LYS 38 n 38 LYS 38 A TYR 39 n 39 TYR 39 A ASP 40 n 40 ASP 40 A LEU 41 n 41 LEU 41 A ARG 42 n 42 ARG 42 A PHE 43 n 43 PHE 43 A LEU 44 n 44 LEU 44 A GLN 45 n 45 GLN 45 A PRO 46 n 46 PRO 46 A ASN 47 n 47 ASN 47 A GLN 48 n 48 GLN 48 A GLY 49 n 49 GLY 49 A ALA 50 n 50 ALA 50 A ILE 51 n 51 ILE 51 A ASP 52 n 52 ASP 52 A PRO 53 n 53 PRO 53 A ALA 54 n 54 ALA 54 A ALA 55 n 55 ALA 55 A ILE 56 n 56 ILE 56 A HIS 57 n 57 HIS 57 A THR 58 n 58 THR 58 A LEU 59 n 59 LEU 59 A GLU 60 n 60 GLU 60 A HIS 61 n 61 HIS 61 A LEU 62 n 62 LEU 62 A LEU 63 n 63 LEU 63 A ALA 64 n 64 ALA 64 A GLY 65 n 65 GLY 65 A TYR 66 n 66 TYR 66 A MSE 67 n 67 MSE 67 A ARG 68 n 68 ARG 68 A ASP 69 n 69 ASP 69 A HIS 70 n 70 HIS 70 A LEU 71 n 71 LEU 71 A GLU 72 n 72 GLU 72 A GLY 73 n 73 GLY 73 A VAL 74 n 74 VAL 74 A VAL 75 n 75 VAL 75 A ASP 76 n 76 ASP 76 A VAL 77 n 77 VAL 77 A SER 78 n 78 SER 78 A PRO 79 n 79 PRO 79 A MSE 80 n 80 MSE 80 A GLY 81 n 81 GLY 81 A CYS 82 n 82 CYS 82 A ARG 83 n 83 ARG 83 A THR 84 n 84 THR 84 A GLY 85 n 85 GLY 85 A MSE 86 n 86 MSE 86 A TYR 87 n 87 TYR 87 A MSE 88 n 88 MSE 88 A ALA 89 n 89 ALA 89 A VAL 90 n 90 VAL 90 A ILE 91 n 91 ILE 91 A GLY 92 n 92 GLY 92 A GLU 93 n 93 GLU 93 A PRO 94 n 94 PRO 94 A ASP 95 n 95 ASP 95 A GLU 96 n 96 GLU 96 A GLN 97 n 97 GLN 97 A GLY 98 n 98 GLY 98 A VAL 99 n 99 VAL 99 A MSE 100 n 100 MSE 100 A LYS 101 n 101 LYS 101 A ALA 102 n 102 ALA 102 A PHE 103 n 103 PHE 103 A GLU 104 n 104 GLU 104 A ALA 105 n 105 ALA 105 A ALA 106 n 106 ALA 106 A LEU 107 n 107 LEU 107 A LYS 108 n 108 LYS 108 A ASP 109 n 109 ASP 109 A THR 110 n 110 THR 110 A ALA 111 n 111 ALA 111 A GLY 112 n 112 GLY 112 A HIS 113 n 113 HIS 113 A ASP 114 n 114 ASP 114 A GLN 115 n 115 GLN 115 A PRO 116 n 116 PRO 116 A ILE 117 n 117 ILE 117 A PRO 118 n 118 PRO 118 A GLY 119 n 119 GLY 119 A VAL 120 n 120 VAL 120 A SER 121 n 121 SER 121 A GLU 122 n 122 GLU 122 A LEU 123 n 123 LEU 123 A GLU 124 n 124 GLU 124 A CYS 125 n 125 CYS 125 A GLY 126 n 126 GLY 126 A ASN 127 n 127 ASN 127 A TYR 128 n 128 TYR 128 A ARG 129 n 129 ARG 129 A ASP 130 n 130 ASP 130 A HIS 131 n 131 HIS 131 A ASP 132 n 132 ASP 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A ALA 135 n 135 ALA 135 A ALA 136 n 136 ALA 136 A ARG 137 n 137 ARG 137 A GLN 138 n 138 GLN 138 A HIS 139 n 139 HIS 139 A ALA 140 n 140 ALA 140 A ARG 141 n 141 ARG 141 A ASP 142 n 142 ASP 142 A VAL 143 n 143 VAL 143 A LEU 144 n 144 LEU 144 A ASP 145 n 145 ASP 145 A GLN 146 n 146 GLN 146 A GLY 147 n 147 GLY 147 A LEU 148 n 148 LEU 148 A LYS 149 n 149 LYS 149 A VAL 150 n 150 VAL 150 A GLN 151 n 151 GLN 151 A GLU 152 n 152 GLU 152 A THR 153 n 153 THR 153 A ILE 154 n 154 ILE 154 A LEU 155 n 155 LEU 155 A LEU 156 n 156 LEU 156 A GLU 157 n 157 GLU 157 A n 158 158 A n 159 159 A n 160 160 A n 161 161 A n 162 162 A n 163 163 A n 164 164 A n 165 165 A n 166 166 A author_and_software_defined_assembly PISA,PQS 2 dimeric 3700 -92 12510 A HOH 168 C O HOH 1_555 A ZN 167 B ZN ZN 1_555 A HIS 57 A NE2 HIS 57 1_555 116.0 A HOH 168 C O HOH 1_555 A ZN 167 B ZN ZN 1_555 A CYS 125 A SG CYS 125 1_555 109.3 A HIS 57 A NE2 HIS 57 1_555 A ZN 167 B ZN ZN 1_555 A CYS 125 A SG CYS 125 1_555 101.3 A HOH 168 C O HOH 1_555 A ZN 167 B ZN ZN 1_555 A HIS 61 A NE2 HIS 61 1_555 116.2 A HIS 57 A NE2 HIS 57 1_555 A ZN 167 B ZN ZN 1_555 A HIS 61 A NE2 HIS 61 1_555 102.3 A CYS 125 A SG CYS 125 1_555 A ZN 167 B ZN ZN 1_555 A HIS 61 A NE2 HIS 61 1_555 110.7 A MSE 67 SELENOMETHIONINE A MSE 67 MET A MSE 80 SELENOMETHIONINE A MSE 80 MET A MSE 86 SELENOMETHIONINE A MSE 86 MET A MSE 88 SELENOMETHIONINE A MSE 88 MET A MSE 100 SELENOMETHIONINE A MSE 100 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 32.5366741252 0.0000000000 46.0990925486 A O LYS 28 A O LYS 28 A N ILE 36 A N ILE 36 A N LEU 41 A N LEU 41 A O MSE 86 A O MSE 86 A O ALA 89 A O ALA 89 A N VAL 75 A N VAL 75 1 A MSE 1 A MSE 1 1 Y 1 A PRO 2 A PRO 2 1 Y 1 A ASP 3 A ASP 3 1 Y 1 A MSE 4 A MSE 4 1 Y 1 A ALA 5 A ALA 5 1 Y 1 A ASN 6 A ASN 6 1 Y 1 A ARG 158 A ARG 158 1 Y 1 A GLY 159 A GLY 159 1 Y 1 A SER 160 A SER 160 1 Y 1 A HIS 161 A HIS 161 1 Y 1 A HIS 162 A HIS 162 1 Y 1 A HIS 163 A HIS 163 1 Y 1 A HIS 164 A HIS 164 1 Y 1 A HIS 165 A HIS 165 1 Y 1 A HIS 166 A HIS 166 1 Y 1 A A OE2 O GLU HOH 96 172 2.13 1 A SER 9 -163.88 93.57 1 A ASP 95 -156.29 71.32 1 A ASN 127 -157.79 58.69 1 A ASP 130 -105.37 75.98 1 A ASP 132 -153.66 87.33 0.243 0.196 0.201 0.201 2.10 35.0 926 9556 9260 10 Random 1 0.0 0.0 MOLECULAR REPLACEMENT Engh & Huber 2.10 35.0 46 1209 1 0 1162 1.4 0.007 14.7 2.10 35.0 1J6V 9556 9260 0.0 0.0 0.08 1 12.9 3.6 96.9 0.094 2.10 2.18 1 3.7 100.0 data collection MAR345 data scaling SCALEPACK phasing AMoRE refinement CNS AUTOINDUCER-2 PRODUCTION PROTEIN LUXS CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, C2 1 N N 2 N N 3 N N A ASP 52 A ASP 52 HELX_P A LEU 71 A LEU 71 1 1 20 A ASP 95 A ASP 95 HELX_P A GLY 112 A GLY 112 1 2 18 A ASP 132 A ASP 132 HELX_P A GLY 147 A GLY 147 1 3 16 covale 1.328 A TYR 66 A C TYR 66 1_555 A MSE 67 A N MSE 67 1_555 covale 1.327 A MSE 67 A C MSE 67 1_555 A ARG 68 A N ARG 68 1_555 covale 1.328 A PRO 79 A C PRO 79 1_555 A MSE 80 A N MSE 80 1_555 covale 1.328 A MSE 80 A C MSE 80 1_555 A GLY 81 A N GLY 81 1_555 covale 1.333 A GLY 85 A C GLY 85 1_555 A MSE 86 A N MSE 86 1_555 covale 1.323 A MSE 86 A C MSE 86 1_555 A TYR 87 A N TYR 87 1_555 covale 1.329 A TYR 87 A C TYR 87 1_555 A MSE 88 A N MSE 88 1_555 covale 1.333 A MSE 88 A C MSE 88 1_555 A ALA 89 A N ALA 89 1_555 covale 1.330 A VAL 99 A C VAL 99 1_555 A MSE 100 A N MSE 100 1_555 covale 1.327 A MSE 100 A C MSE 100 1_555 A LYS 101 A N LYS 101 1_555 metalc 2.429 A ZN 167 B ZN ZN 1_555 A HOH 168 C O HOH 1_555 metalc 2.229 A ZN 167 B ZN ZN 1_555 A HIS 57 A NE2 HIS 57 1_555 metalc 2.347 A ZN 167 B ZN ZN 1_555 A CYS 125 A SG CYS 125 1_555 metalc 2.160 A ZN 167 B ZN ZN 1_555 A HIS 61 A NE2 HIS 61 1_555 SIGNALING PROTEIN alpha-beta fold, SIGNALING PROTEIN A ALA 19 A ALA 19 1 A PRO 20 A PRO 20 -0.14 LUXS_DEIRA UNP 1 1 Q9RRU8 MPDMANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPM GCRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLER 1 158 1J6V 1 158 Q9RRU8 A 1 1 158 1 MET CLONING ARTIFACT MSE 1 1J6V A Q9RRU8 UNP 1 1 1 MET CLONING ARTIFACT MSE 4 1J6V A Q9RRU8 UNP 4 4 1 MET CLONING ARTIFACT MSE 67 1J6V A Q9RRU8 UNP 67 67 1 MET CLONING ARTIFACT MSE 80 1J6V A Q9RRU8 UNP 80 80 1 MET CLONING ARTIFACT MSE 86 1J6V A Q9RRU8 UNP 86 86 1 MET CLONING ARTIFACT MSE 88 1J6V A Q9RRU8 UNP 88 88 1 MET CLONING ARTIFACT MSE 100 1J6V A Q9RRU8 UNP 100 100 1 EXPRESSION TAG GLY 159 1J6V A Q9RRU8 UNP 159 1 EXPRESSION TAG SER 160 1J6V A Q9RRU8 UNP 160 1 EXPRESSION TAG HIS 161 1J6V A Q9RRU8 UNP 161 1 EXPRESSION TAG HIS 162 1J6V A Q9RRU8 UNP 162 1 EXPRESSION TAG HIS 163 1J6V A Q9RRU8 UNP 163 1 EXPRESSION TAG HIS 164 1J6V A Q9RRU8 UNP 164 1 EXPRESSION TAG HIS 165 1J6V A Q9RRU8 UNP 165 1 EXPRESSION TAG HIS 166 1J6V A Q9RRU8 UNP 166 4 anti-parallel anti-parallel anti-parallel A TYR 21 A TYR 21 A THR 29 A THR 29 A GLN 35 A GLN 35 A ARG 42 A ARG 42 A GLY 85 A GLY 85 A ILE 91 A ILE 91 A VAL 74 A VAL 74 A PRO 79 A PRO 79 BINDING SITE FOR RESIDUE ZN A 167 Software 4 A HIS 57 A HIS 57 4 1_555 A HIS 61 A HIS 61 4 1_555 A CYS 125 A CYS 125 4 1_555 A HOH 168 C HOH 4 1_555 5 monoclinic C 1 2 1