0.019535
0.000000
0.007905
0.000000
0.014257
0.000000
0.000000
0.000000
0.021692
0.00000
0.00000
0.00000
Lewis, H.A.
Furlong, E.B.
Bergseid, M.G.
Sanderson, W.E.
Buchanan, S.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
112.03
90.00
51.190
70.140
49.730
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Structure
STRUE6
2005
0969-2126
9
527
537
10.1016/S0969-2126(01)00613-X
11435117
A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs.
2001
US
Proteins
PSFGEY
0867
0887-3585
60
787
796
10.1002/prot.20541
16021622
Structural analysis of a set of proteins resulting from a bacterial genomics project
2005
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-09-05
MARRESEARCH
Graphite
SINGLE WAVELENGTH
M
x-ray
1
0.9641
1.0
32-ID
APS
0.9641
SYNCHROTRON
APS BEAMLINE 32-ID
18719.035
AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
46
nat
water
AI-2 SYNTHESIS PROTEIN, CONSERVED HYPOTHETICAL PROTEIN
no
yes
(MSE)PD(MSE)ANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGY(MSE)R
DHLEGVVDVSP(MSE)GCRTG(MSE)Y(MSE)AVIGEPDEQGV(MSE)KAFEAALKDTAGHDQPIPGVSELECGNYRDHD
LAAARQHARDVLDQGLKVQETILLERGSHHHHHH
MPDMANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPM
GCRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLERGS
HHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Deinococcus
Escherichia
sample
1299
Deinococcus radiodurans
562
Escherichia coli
1
2.44
49.3
VAPOR DIFFUSION, HANGING DROP
6.5
PEG MME 5000, MES, BME, NaCl, , pH 6.5, VAPOR DIFFUSION, HANGING DROP at 277K, temperature 277.0K
277.0
software
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
1
0
2001-06-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
RCSB
Y
RCSB
2001-05-14
REL
REL
ZN
ZINC ION
HOH
water
ZN
1
2
ZN
ZN
167
A
HOH
2
3
HOH
HOH
168
A
HOH
3
3
HOH
HOH
169
A
HOH
4
3
HOH
HOH
170
A
HOH
5
3
HOH
HOH
171
A
HOH
6
3
HOH
HOH
172
A
HOH
7
3
HOH
HOH
173
A
HOH
8
3
HOH
HOH
174
A
HOH
9
3
HOH
HOH
175
A
HOH
10
3
HOH
HOH
176
A
HOH
11
3
HOH
HOH
177
A
HOH
12
3
HOH
HOH
178
A
HOH
13
3
HOH
HOH
179
A
HOH
14
3
HOH
HOH
180
A
HOH
15
3
HOH
HOH
181
A
HOH
16
3
HOH
HOH
182
A
HOH
17
3
HOH
HOH
183
A
HOH
18
3
HOH
HOH
184
A
HOH
19
3
HOH
HOH
185
A
HOH
20
3
HOH
HOH
186
A
HOH
21
3
HOH
HOH
187
A
HOH
22
3
HOH
HOH
188
A
HOH
23
3
HOH
HOH
189
A
HOH
24
3
HOH
HOH
190
A
HOH
25
3
HOH
HOH
191
A
HOH
26
3
HOH
HOH
192
A
HOH
27
3
HOH
HOH
193
A
HOH
28
3
HOH
HOH
194
A
HOH
29
3
HOH
HOH
195
A
HOH
30
3
HOH
HOH
196
A
HOH
31
3
HOH
HOH
197
A
HOH
32
3
HOH
HOH
198
A
HOH
33
3
HOH
HOH
199
A
HOH
34
3
HOH
HOH
200
A
HOH
35
3
HOH
HOH
201
A
HOH
36
3
HOH
HOH
202
A
HOH
37
3
HOH
HOH
203
A
HOH
38
3
HOH
HOH
204
A
HOH
39
3
HOH
HOH
205
A
HOH
40
3
HOH
HOH
206
A
HOH
41
3
HOH
HOH
207
A
HOH
42
3
HOH
HOH
208
A
HOH
43
3
HOH
HOH
209
A
HOH
44
3
HOH
HOH
210
A
HOH
45
3
HOH
HOH
211
A
HOH
46
3
HOH
HOH
212
A
HOH
47
3
HOH
HOH
213
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
VAL
7
n
7
VAL
7
A
GLU
8
n
8
GLU
8
A
SER
9
n
9
SER
9
A
PHE
10
n
10
PHE
10
A
ASP
11
n
11
ASP
11
A
LEU
12
n
12
LEU
12
A
ASP
13
n
13
ASP
13
A
HIS
14
n
14
HIS
14
A
THR
15
n
15
THR
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
PRO
20
n
20
PRO
20
A
TYR
21
n
21
TYR
21
A
VAL
22
n
22
VAL
22
A
ARG
23
n
23
ARG
23
A
LEU
24
n
24
LEU
24
A
ALA
25
n
25
ALA
25
A
GLY
26
n
26
GLY
26
A
VAL
27
n
27
VAL
27
A
LYS
28
n
28
LYS
28
A
THR
29
n
29
THR
29
A
THR
30
n
30
THR
30
A
PRO
31
n
31
PRO
31
A
LYS
32
n
32
LYS
32
A
GLY
33
n
33
GLY
33
A
ASP
34
n
34
ASP
34
A
GLN
35
n
35
GLN
35
A
ILE
36
n
36
ILE
36
A
SER
37
n
37
SER
37
A
LYS
38
n
38
LYS
38
A
TYR
39
n
39
TYR
39
A
ASP
40
n
40
ASP
40
A
LEU
41
n
41
LEU
41
A
ARG
42
n
42
ARG
42
A
PHE
43
n
43
PHE
43
A
LEU
44
n
44
LEU
44
A
GLN
45
n
45
GLN
45
A
PRO
46
n
46
PRO
46
A
ASN
47
n
47
ASN
47
A
GLN
48
n
48
GLN
48
A
GLY
49
n
49
GLY
49
A
ALA
50
n
50
ALA
50
A
ILE
51
n
51
ILE
51
A
ASP
52
n
52
ASP
52
A
PRO
53
n
53
PRO
53
A
ALA
54
n
54
ALA
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
HIS
57
n
57
HIS
57
A
THR
58
n
58
THR
58
A
LEU
59
n
59
LEU
59
A
GLU
60
n
60
GLU
60
A
HIS
61
n
61
HIS
61
A
LEU
62
n
62
LEU
62
A
LEU
63
n
63
LEU
63
A
ALA
64
n
64
ALA
64
A
GLY
65
n
65
GLY
65
A
TYR
66
n
66
TYR
66
A
MSE
67
n
67
MSE
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
HIS
70
n
70
HIS
70
A
LEU
71
n
71
LEU
71
A
GLU
72
n
72
GLU
72
A
GLY
73
n
73
GLY
73
A
VAL
74
n
74
VAL
74
A
VAL
75
n
75
VAL
75
A
ASP
76
n
76
ASP
76
A
VAL
77
n
77
VAL
77
A
SER
78
n
78
SER
78
A
PRO
79
n
79
PRO
79
A
MSE
80
n
80
MSE
80
A
GLY
81
n
81
GLY
81
A
CYS
82
n
82
CYS
82
A
ARG
83
n
83
ARG
83
A
THR
84
n
84
THR
84
A
GLY
85
n
85
GLY
85
A
MSE
86
n
86
MSE
86
A
TYR
87
n
87
TYR
87
A
MSE
88
n
88
MSE
88
A
ALA
89
n
89
ALA
89
A
VAL
90
n
90
VAL
90
A
ILE
91
n
91
ILE
91
A
GLY
92
n
92
GLY
92
A
GLU
93
n
93
GLU
93
A
PRO
94
n
94
PRO
94
A
ASP
95
n
95
ASP
95
A
GLU
96
n
96
GLU
96
A
GLN
97
n
97
GLN
97
A
GLY
98
n
98
GLY
98
A
VAL
99
n
99
VAL
99
A
MSE
100
n
100
MSE
100
A
LYS
101
n
101
LYS
101
A
ALA
102
n
102
ALA
102
A
PHE
103
n
103
PHE
103
A
GLU
104
n
104
GLU
104
A
ALA
105
n
105
ALA
105
A
ALA
106
n
106
ALA
106
A
LEU
107
n
107
LEU
107
A
LYS
108
n
108
LYS
108
A
ASP
109
n
109
ASP
109
A
THR
110
n
110
THR
110
A
ALA
111
n
111
ALA
111
A
GLY
112
n
112
GLY
112
A
HIS
113
n
113
HIS
113
A
ASP
114
n
114
ASP
114
A
GLN
115
n
115
GLN
115
A
PRO
116
n
116
PRO
116
A
ILE
117
n
117
ILE
117
A
PRO
118
n
118
PRO
118
A
GLY
119
n
119
GLY
119
A
VAL
120
n
120
VAL
120
A
SER
121
n
121
SER
121
A
GLU
122
n
122
GLU
122
A
LEU
123
n
123
LEU
123
A
GLU
124
n
124
GLU
124
A
CYS
125
n
125
CYS
125
A
GLY
126
n
126
GLY
126
A
ASN
127
n
127
ASN
127
A
TYR
128
n
128
TYR
128
A
ARG
129
n
129
ARG
129
A
ASP
130
n
130
ASP
130
A
HIS
131
n
131
HIS
131
A
ASP
132
n
132
ASP
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
ARG
137
n
137
ARG
137
A
GLN
138
n
138
GLN
138
A
HIS
139
n
139
HIS
139
A
ALA
140
n
140
ALA
140
A
ARG
141
n
141
ARG
141
A
ASP
142
n
142
ASP
142
A
VAL
143
n
143
VAL
143
A
LEU
144
n
144
LEU
144
A
ASP
145
n
145
ASP
145
A
GLN
146
n
146
GLN
146
A
GLY
147
n
147
GLY
147
A
LEU
148
n
148
LEU
148
A
LYS
149
n
149
LYS
149
A
VAL
150
n
150
VAL
150
A
GLN
151
n
151
GLN
151
A
GLU
152
n
152
GLU
152
A
THR
153
n
153
THR
153
A
ILE
154
n
154
ILE
154
A
LEU
155
n
155
LEU
155
A
LEU
156
n
156
LEU
156
A
GLU
157
n
157
GLU
157
A
n
158
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3700
-92
12510
A
HOH
168
C
O
HOH
1_555
A
ZN
167
B
ZN
ZN
1_555
A
HIS
57
A
NE2
HIS
57
1_555
116.0
A
HOH
168
C
O
HOH
1_555
A
ZN
167
B
ZN
ZN
1_555
A
CYS
125
A
SG
CYS
125
1_555
109.3
A
HIS
57
A
NE2
HIS
57
1_555
A
ZN
167
B
ZN
ZN
1_555
A
CYS
125
A
SG
CYS
125
1_555
101.3
A
HOH
168
C
O
HOH
1_555
A
ZN
167
B
ZN
ZN
1_555
A
HIS
61
A
NE2
HIS
61
1_555
116.2
A
HIS
57
A
NE2
HIS
57
1_555
A
ZN
167
B
ZN
ZN
1_555
A
HIS
61
A
NE2
HIS
61
1_555
102.3
A
CYS
125
A
SG
CYS
125
1_555
A
ZN
167
B
ZN
ZN
1_555
A
HIS
61
A
NE2
HIS
61
1_555
110.7
A
MSE
67
SELENOMETHIONINE
A
MSE
67
MET
A
MSE
80
SELENOMETHIONINE
A
MSE
80
MET
A
MSE
86
SELENOMETHIONINE
A
MSE
86
MET
A
MSE
88
SELENOMETHIONINE
A
MSE
88
MET
A
MSE
100
SELENOMETHIONINE
A
MSE
100
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_656
-x+1,y,-z+1
crystal symmetry operation
32.5366741252
0.0000000000
46.0990925486
A
O
LYS
28
A
O
LYS
28
A
N
ILE
36
A
N
ILE
36
A
N
LEU
41
A
N
LEU
41
A
O
MSE
86
A
O
MSE
86
A
O
ALA
89
A
O
ALA
89
A
N
VAL
75
A
N
VAL
75
1
A
MSE
1
A
MSE
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
MSE
4
A
MSE
4
1
Y
1
A
ALA
5
A
ALA
5
1
Y
1
A
ASN
6
A
ASN
6
1
Y
1
A
ARG
158
A
ARG
158
1
Y
1
A
GLY
159
A
GLY
159
1
Y
1
A
SER
160
A
SER
160
1
Y
1
A
HIS
161
A
HIS
161
1
Y
1
A
HIS
162
A
HIS
162
1
Y
1
A
HIS
163
A
HIS
163
1
Y
1
A
HIS
164
A
HIS
164
1
Y
1
A
HIS
165
A
HIS
165
1
Y
1
A
HIS
166
A
HIS
166
1
Y
1
A
A
OE2
O
GLU
HOH
96
172
2.13
1
A
SER
9
-163.88
93.57
1
A
ASP
95
-156.29
71.32
1
A
ASN
127
-157.79
58.69
1
A
ASP
130
-105.37
75.98
1
A
ASP
132
-153.66
87.33
0.243
0.196
0.201
0.201
2.10
35.0
926
9556
9260
10
Random
1
0.0
0.0
MOLECULAR REPLACEMENT
Engh & Huber
2.10
35.0
46
1209
1
0
1162
1.4
0.007
14.7
2.10
35.0
1J6V
9556
9260
0.0
0.0
0.08
1
12.9
3.6
96.9
0.094
2.10
2.18
1
3.7
100.0
data collection
MAR345
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, C2
1
N
N
2
N
N
3
N
N
A
ASP
52
A
ASP
52
HELX_P
A
LEU
71
A
LEU
71
1
1
20
A
ASP
95
A
ASP
95
HELX_P
A
GLY
112
A
GLY
112
1
2
18
A
ASP
132
A
ASP
132
HELX_P
A
GLY
147
A
GLY
147
1
3
16
covale
1.328
A
TYR
66
A
C
TYR
66
1_555
A
MSE
67
A
N
MSE
67
1_555
covale
1.327
A
MSE
67
A
C
MSE
67
1_555
A
ARG
68
A
N
ARG
68
1_555
covale
1.328
A
PRO
79
A
C
PRO
79
1_555
A
MSE
80
A
N
MSE
80
1_555
covale
1.328
A
MSE
80
A
C
MSE
80
1_555
A
GLY
81
A
N
GLY
81
1_555
covale
1.333
A
GLY
85
A
C
GLY
85
1_555
A
MSE
86
A
N
MSE
86
1_555
covale
1.323
A
MSE
86
A
C
MSE
86
1_555
A
TYR
87
A
N
TYR
87
1_555
covale
1.329
A
TYR
87
A
C
TYR
87
1_555
A
MSE
88
A
N
MSE
88
1_555
covale
1.333
A
MSE
88
A
C
MSE
88
1_555
A
ALA
89
A
N
ALA
89
1_555
covale
1.330
A
VAL
99
A
C
VAL
99
1_555
A
MSE
100
A
N
MSE
100
1_555
covale
1.327
A
MSE
100
A
C
MSE
100
1_555
A
LYS
101
A
N
LYS
101
1_555
metalc
2.429
A
ZN
167
B
ZN
ZN
1_555
A
HOH
168
C
O
HOH
1_555
metalc
2.229
A
ZN
167
B
ZN
ZN
1_555
A
HIS
57
A
NE2
HIS
57
1_555
metalc
2.347
A
ZN
167
B
ZN
ZN
1_555
A
CYS
125
A
SG
CYS
125
1_555
metalc
2.160
A
ZN
167
B
ZN
ZN
1_555
A
HIS
61
A
NE2
HIS
61
1_555
SIGNALING PROTEIN
alpha-beta fold, SIGNALING PROTEIN
A
ALA
19
A
ALA
19
1
A
PRO
20
A
PRO
20
-0.14
LUXS_DEIRA
UNP
1
1
Q9RRU8
MPDMANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPM
GCRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLER
1
158
1J6V
1
158
Q9RRU8
A
1
1
158
1
MET
CLONING ARTIFACT
MSE
1
1J6V
A
Q9RRU8
UNP
1
1
1
MET
CLONING ARTIFACT
MSE
4
1J6V
A
Q9RRU8
UNP
4
4
1
MET
CLONING ARTIFACT
MSE
67
1J6V
A
Q9RRU8
UNP
67
67
1
MET
CLONING ARTIFACT
MSE
80
1J6V
A
Q9RRU8
UNP
80
80
1
MET
CLONING ARTIFACT
MSE
86
1J6V
A
Q9RRU8
UNP
86
86
1
MET
CLONING ARTIFACT
MSE
88
1J6V
A
Q9RRU8
UNP
88
88
1
MET
CLONING ARTIFACT
MSE
100
1J6V
A
Q9RRU8
UNP
100
100
1
EXPRESSION TAG
GLY
159
1J6V
A
Q9RRU8
UNP
159
1
EXPRESSION TAG
SER
160
1J6V
A
Q9RRU8
UNP
160
1
EXPRESSION TAG
HIS
161
1J6V
A
Q9RRU8
UNP
161
1
EXPRESSION TAG
HIS
162
1J6V
A
Q9RRU8
UNP
162
1
EXPRESSION TAG
HIS
163
1J6V
A
Q9RRU8
UNP
163
1
EXPRESSION TAG
HIS
164
1J6V
A
Q9RRU8
UNP
164
1
EXPRESSION TAG
HIS
165
1J6V
A
Q9RRU8
UNP
165
1
EXPRESSION TAG
HIS
166
1J6V
A
Q9RRU8
UNP
166
4
anti-parallel
anti-parallel
anti-parallel
A
TYR
21
A
TYR
21
A
THR
29
A
THR
29
A
GLN
35
A
GLN
35
A
ARG
42
A
ARG
42
A
GLY
85
A
GLY
85
A
ILE
91
A
ILE
91
A
VAL
74
A
VAL
74
A
PRO
79
A
PRO
79
BINDING SITE FOR RESIDUE ZN A 167
Software
4
A
HIS
57
A
HIS
57
4
1_555
A
HIS
61
A
HIS
61
4
1_555
A
CYS
125
A
CYS
125
4
1_555
A
HOH
168
C
HOH
4
1_555
5
monoclinic
C 1 2 1