0.015721 0.009076 0.000000 0.000000 0.018153 0.000000 0.000000 0.000000 0.013843 0.00000 0.00000 0.00000 Schwartz, T. Behlke, J. Lowenhaupt, K. Heinemann, U. Rich, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 63.611 63.611 72.238 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C N 100 N N N 101 N C N 102 N O N 103 N N N 104 N C N 105 N N N 106 N C N 107 N C N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N O N 123 N P N 124 N O N 125 N O N 126 N O N 127 N C N 128 R C N 129 N O N 130 S C N 131 N O N 132 N C N 133 R C Y 134 N N Y 135 N C Y 136 N N Y 137 N C N 138 N C N 139 N O N 140 N N N 141 N C N 142 N N N 143 N N Y 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C N 171 N N N 172 N C N 173 N O N 174 N N N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N O N 203 N N N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N O N 223 N O N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 N C N 236 N C N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C Y 249 N C Y 250 N N Y 251 N C Y 252 N C Y 253 N N N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N O N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C N 362 N C N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N O N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 R C N 393 N O N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N N N 406 S C N 407 N C N 408 N O N 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N N Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C N 461 N C N 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing Y 141 N sing Y 142 N sing Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing Y 147 N doub N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing Y 251 N sing Y 252 N doub Y 253 N doub N 254 N sing Y 255 N sing N 256 N sing Y 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N sing Y 414 N doub N 415 N sing Y 416 N doub N 417 N sing Y 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing Y 433 N doub Y 434 N sing Y 435 N sing N 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 8 761 765 10.1038/nsb0901-761 11524677 Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins. 2001 10.2210/pdb1j75/pdb pdb_00001j75 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2000-08-16 MARRESEARCH MIRRORS SINGLE WAVELENGTH M x-ray 1 0.9102 1.0 X11 EMBL/DESY, HAMBURG 0.9102 0.9102 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 2114.398 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' 1 syn polymer 7328.450 Tumor Stroma and Activated Macrophage Protein DLM-1 N-TERMINAL WINGED-HELIX DOMAIN ZALPHA 1 man polymer 18.015 water 102 nat water no no (DT)(DC)(DG)(DC)(DG)(DC)(DG) TCGCGCG B polydeoxyribonucleotide no no GSHMLSTGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG GSHMLSTGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli Novablue (DE3) PLASMID pET28a 2 2.59 52.2 VAPOR DIFFUSION, HANGING DROP 6.00 15% PEG 4000, 0.1M ammonium hydrogen phosphate, 15% ethylene glycol, 0.1M MES pH 6.0, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 297K 297 PEG 4000 1 ammonium hydrogen phosphate 1 ethylene glycol 1 MES 1 0.732 1 19 B 201 B 206 -5.122 B_DC201:DG206_B 1 -7.188 -0.170 -0.068 -0.158 3.584 1 19 B 202 B 205 0.492 B_DG202:DC205_B 2 -9.300 0.402 0.225 -0.184 11.764 1 19 B 203 B 204 -2.625 B_DC203:DG204_B 3 -6.146 -0.324 -0.123 -0.048 -11.764 1 19 B 204 B 203 -2.624 B_DG204:DC203_B 4 -6.146 0.324 -0.123 -0.048 -3.584 1 19 B 205 B 202 0.492 B_DC205:DG202_B 5 -9.300 -0.402 0.225 -0.184 -0.732 1 19 B 206 B 201 -5.122 B_DG206:DC201_B 6 -7.188 0.170 -0.068 -0.158 5.861 -13.673 B B 201 202 47.126 B B 206 205 3.383 -9.939 0.124 4.947 BB_DC201DG202:DC205DG206_BB 1 -2.426 -11.504 -9.082 -3.864 -3.609 2.867 -46.004 B B 202 203 13.122 B B 205 204 3.283 -10.177 0.157 -1.601 BB_DG202DC203:DG204DC205_BB 2 1.659 2.139 -44.895 2.883 0.337 6.603 -14.385 B B 203 204 40.744 B B 204 203 3.917 -9.375 0.000 5.580 BB_DC203DG204:DC203DG204_BB 3 0.000 0.000 -10.923 -6.777 0.000 2.867 -46.004 B B 204 205 13.122 B B 203 202 3.283 -10.177 -0.157 -1.601 BB_DG204DC205:DG202DC203_BB 4 -1.659 -2.139 -44.895 2.883 -0.337 5.861 -13.673 B B 205 206 47.126 B B 202 201 3.383 -9.939 -0.124 4.947 BB_DC205DG206:DC201DG202_BB 5 2.426 11.504 -9.082 -3.864 3.610 chem_comp_atom chem_comp_bond database_2 diffrn_source pdbx_initial_refinement_model pdbx_validate_close_contact struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Atomic model Advisory Data collection Database references Refinement description 1 0 2001-09-01 1 1 2008-04-27 1 2 2011-07-13 1 3 2011-11-16 1 4 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_ref_seq_dif.details RCSB Y RCSB 2001-05-15 REL REL HOH water 1QBJ PDB ENTRY 1QBJ PDB experimental model HOH 304 3 HOH HOH 304 B HOH 305 3 HOH HOH 305 B HOH 306 3 HOH HOH 306 B HOH 307 3 HOH HOH 307 B HOH 321 3 HOH HOH 321 B HOH 329 3 HOH HOH 329 B HOH 332 3 HOH HOH 332 B HOH 333 3 HOH HOH 333 B HOH 340 3 HOH HOH 340 B HOH 342 3 HOH HOH 342 B HOH 343 3 HOH HOH 343 B HOH 344 3 HOH HOH 344 B HOH 345 3 HOH HOH 345 B HOH 349 3 HOH HOH 349 B HOH 354 3 HOH HOH 354 B HOH 355 3 HOH HOH 355 B HOH 361 3 HOH HOH 361 B HOH 362 3 HOH HOH 362 B HOH 373 3 HOH HOH 373 B HOH 388 3 HOH HOH 388 B HOH 389 3 HOH HOH 389 B HOH 390 3 HOH HOH 390 B HOH 391 3 HOH HOH 391 B HOH 395 3 HOH HOH 395 B HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 334 3 HOH HOH 334 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 341 3 HOH HOH 341 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 350 3 HOH HOH 350 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 365 3 HOH HOH 365 A HOH 366 3 HOH HOH 366 A HOH 367 3 HOH HOH 367 A HOH 368 3 HOH HOH 368 A HOH 369 3 HOH HOH 369 A HOH 370 3 HOH HOH 370 A HOH 371 3 HOH HOH 371 A HOH 372 3 HOH HOH 372 A HOH 374 3 HOH HOH 374 A HOH 375 3 HOH HOH 375 A HOH 376 3 HOH HOH 376 A HOH 377 3 HOH HOH 377 A HOH 378 3 HOH HOH 378 A HOH 379 3 HOH HOH 379 A HOH 380 3 HOH HOH 380 A HOH 381 3 HOH HOH 381 A HOH 382 3 HOH HOH 382 A HOH 383 3 HOH HOH 383 A HOH 384 3 HOH HOH 384 A HOH 385 3 HOH HOH 385 A HOH 386 3 HOH HOH 386 A HOH 387 3 HOH HOH 387 A HOH 392 3 HOH HOH 392 A HOH 393 3 HOH HOH 393 A HOH 394 3 HOH HOH 394 A HOH 396 3 HOH HOH 396 A HOH 397 3 HOH HOH 397 A HOH 398 3 HOH HOH 398 A HOH 399 3 HOH HOH 399 A HOH 400 3 HOH HOH 400 A HOH 401 3 HOH HOH 401 A HOH 402 3 HOH HOH 402 A T 200 n 1 DT 200 B C 201 n 2 DC 201 B G 202 n 3 DG 202 B C 203 n 4 DC 203 B G 204 n 5 DG 204 B C 205 n 6 DC 205 B G 206 n 7 DG 206 B n 1 104 A n 2 105 A n 3 106 A n 4 107 A n 5 108 A n 6 109 A n 7 110 A n 8 111 A n 9 112 A ASN 113 n 10 ASN 113 A LEU 114 n 11 LEU 114 A GLU 115 n 12 GLU 115 A GLN 116 n 13 GLN 116 A LYS 117 n 14 LYS 117 A ILE 118 n 15 ILE 118 A LEU 119 n 16 LEU 119 A GLN 120 n 17 GLN 120 A VAL 121 n 18 VAL 121 A LEU 122 n 19 LEU 122 A SER 123 n 20 SER 123 A ASP 124 n 21 ASP 124 A ASP 125 n 22 ASP 125 A GLY 126 n 23 GLY 126 A GLY 127 n 24 GLY 127 A PRO 128 n 25 PRO 128 A VAL 129 n 26 VAL 129 A LYS 130 n 27 LYS 130 A ILE 131 n 28 ILE 131 A GLY 132 n 29 GLY 132 A GLN 133 n 30 GLN 133 A LEU 134 n 31 LEU 134 A VAL 135 n 32 VAL 135 A LYS 136 n 33 LYS 136 A LYS 137 n 34 LYS 137 A CYS 138 n 35 CYS 138 A GLN 139 n 36 GLN 139 A VAL 140 n 37 VAL 140 A PRO 141 n 38 PRO 141 A LYS 142 n 39 LYS 142 A LYS 143 n 40 LYS 143 A THR 144 n 41 THR 144 A LEU 145 n 42 LEU 145 A ASN 146 n 43 ASN 146 A GLN 147 n 44 GLN 147 A VAL 148 n 45 VAL 148 A LEU 149 n 46 LEU 149 A TYR 150 n 47 TYR 150 A ARG 151 n 48 ARG 151 A LEU 152 n 49 LEU 152 A LYS 153 n 50 LYS 153 A LYS 154 n 51 LYS 154 A GLU 155 n 52 GLU 155 A ASP 156 n 53 ASP 156 A ARG 157 n 54 ARG 157 A VAL 158 n 55 VAL 158 A SER 159 n 56 SER 159 A SER 160 n 57 SER 160 A PRO 161 n 58 PRO 161 A GLU 162 n 59 GLU 162 A PRO 163 n 60 PRO 163 A ALA 164 n 61 ALA 164 A THR 165 n 62 THR 165 A TRP 166 n 63 TRP 166 A SER 167 n 64 SER 167 A ILE 168 n 65 ILE 168 A GLY 169 n 66 GLY 169 A n 67 170 A author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_455 -x+y-1,y,-z+1/2 crystal symmetry operation -63.6110000000 0.0000000000 36.1190000000 A O VAL 129 B O VAL 26 A N TRP 166 B N TRP 63 A N SER 167 B N SER 64 A O SER 159 B O SER 56 1 B HOH 391 C HOH 1 A HOH 335 D HOH 1 A HOH 338 D HOH 1 A HOH 339 D HOH 1 A HOH 399 D HOH 1 A CD LYS 142 B CD LYS 39 1 Y 1 A CE LYS 142 B CE LYS 39 1 Y 1 A NZ LYS 142 B NZ LYS 39 1 Y 1 A GLY 104 B GLY 1 1 Y 1 A SER 105 B SER 2 1 Y 1 A HIS 106 B HIS 3 1 Y 1 A MET 107 B MET 4 1 Y 1 A LEU 108 B LEU 5 1 Y 1 A SER 109 B SER 6 1 Y 1 A THR 110 B THR 7 1 Y 1 A GLY 111 B GLY 8 1 Y 1 A ASP 112 B ASP 9 1 Y 1 A GLY 170 B GLY 67 1 Y 1 B A O O HOH HOH 333 350 2.14 1 A A OD1 O ASN HOH 113 378 2.15 1 2.36 0.30 108.30 110.66 B B B O4' C1' N1 DT DT DT 200 200 200 N 1 2.33 0.30 108.30 110.63 B B B O4' C1' N1 DC DC DC 203 203 203 N 21.3 0.08 0.04 0.00 0.08 0.00 -0.12 CNS 1.0 and REFMAC5 used in refinement 0.2400000 0.2180000 0.2250000 0.2250000 1.85 32.00 826 7778 7778 10.6 99.53 RANDOM R VALUE (WORKING + TEST SET) : 0.22152 1 THROUGHOUT 0.00 0.00 MOLECULAR REPLACEMENT PDB ENTRY 1QBJ MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK PARAMETERS FOR MASK CALCULATION VDW PROBE RADIUS : 1.40 ION PROBE RADIUS : 0.80 SHRINKAGE RADIUS : 0.80 1.85 32.00 102 686 0 140 444 0.019 0.017 1.614 1.59 2.603 1.80 3.444 2.60 5.549 1.61 0.3130000 0.2790000 1.88 53 99.5 37.6 1.85 32.0 1J75 7802 7802 0.000 0.000 0.0660000 1 6.7 23.4 99.8 0.6130000 1.85 1.88 2.9 7.90 99.5 phasing EPMR refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA 1 N N 2 N N 3 N N 3 N N A ASN 113 B ASN 10 HELX_P A GLY 126 B GLY 23 1 1 14 A ILE 131 B ILE 28 HELX_P A GLN 139 B GLN 36 1 2 9 A PRO 141 B PRO 38 HELX_P A GLU 155 B GLU 52 1 3 15 hydrog WATSON-CRICK B DC 201 A N3 DC 2 1_555 B DG 206 A N1 DG 7 11_455 hydrog WATSON-CRICK B DC 201 A N4 DC 2 1_555 B DG 206 A O6 DG 7 11_455 hydrog WATSON-CRICK B DC 201 A O2 DC 2 1_555 B DG 206 A N2 DG 7 11_455 hydrog WATSON-CRICK B DG 202 A N1 DG 3 1_555 B DC 205 A N3 DC 6 11_455 hydrog WATSON-CRICK B DG 202 A N2 DG 3 1_555 B DC 205 A O2 DC 6 11_455 hydrog WATSON-CRICK B DG 202 A O6 DG 3 1_555 B DC 205 A N4 DC 6 11_455 hydrog WATSON-CRICK B DC 203 A N3 DC 4 1_555 B DG 204 A N1 DG 5 11_455 hydrog WATSON-CRICK B DC 203 A N4 DC 4 1_555 B DG 204 A O6 DG 5 11_455 hydrog WATSON-CRICK B DC 203 A O2 DC 4 1_555 B DG 204 A N2 DG 5 11_455 hydrog WATSON-CRICK B DG 204 A N1 DG 5 1_555 B DC 203 A N3 DC 4 11_455 hydrog WATSON-CRICK B DG 204 A N2 DG 5 1_555 B DC 203 A O2 DC 4 11_455 hydrog WATSON-CRICK B DG 204 A O6 DG 5 1_555 B DC 203 A N4 DC 4 11_455 hydrog WATSON-CRICK B DC 205 A N3 DC 6 1_555 B DG 202 A N1 DG 3 11_455 hydrog WATSON-CRICK B DC 205 A N4 DC 6 1_555 B DG 202 A O6 DG 3 11_455 hydrog WATSON-CRICK B DC 205 A O2 DC 6 1_555 B DG 202 A N2 DG 3 11_455 hydrog WATSON-CRICK B DG 206 A N1 DG 7 1_555 B DC 201 A N3 DC 2 11_455 hydrog WATSON-CRICK B DG 206 A N2 DG 7 1_555 B DC 201 A O2 DC 2 11_455 hydrog WATSON-CRICK B DG 206 A O6 DG 7 1_555 B DC 201 A N4 DC 2 11_455 IMMUNE SYSTEM/DNA PROTEIN-Z-DNA COMPLEX, IMMUNE SYSTEM-DNA COMPLEX ZBP1_MOUSE UNP 2 8 Q9QY24 LSTGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG 1J75 PDB 1 1J75 8 70 1J75 108 170 Q9QY24 A 1 5 67 200 206 1J75 200 206 1J75 B 2 1 7 1 cloning artifact GLY 104 1J75 A Q9QY24 UNP 1 1 cloning artifact SER 105 1J75 A Q9QY24 UNP 2 1 cloning artifact HIS 106 1J75 A Q9QY24 UNP 3 1 cloning artifact MET 107 1J75 A Q9QY24 UNP 4 3 anti-parallel anti-parallel A VAL 129 B VAL 26 A LYS 130 B LYS 27 A THR 165 B THR 62 A ILE 168 B ILE 65 A VAL 158 B VAL 55 A GLU 162 B GLU 59 179 P 65 2 2