0.015721
0.009076
0.000000
0.000000
0.018153
0.000000
0.000000
0.000000
0.013843
0.00000
0.00000
0.00000
Schwartz, T.
Behlke, J.
Lowenhaupt, K.
Heinemann, U.
Rich, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
63.611
63.611
72.238
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
N
100
N
N
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
C
N
105
N
N
N
106
N
C
N
107
N
C
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
O
N
123
N
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
R
C
N
129
N
O
N
130
S
C
N
131
N
O
N
132
N
C
N
133
R
C
Y
134
N
N
Y
135
N
C
Y
136
N
N
Y
137
N
C
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
N
Y
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
N
171
N
N
N
172
N
C
N
173
N
O
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
N
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
O
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
Y
249
N
C
Y
250
N
N
Y
251
N
C
Y
252
N
C
Y
253
N
N
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
S
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
N
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
S
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
R
C
N
393
N
O
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
N
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
sing
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
Y
147
N
doub
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
Y
251
N
sing
Y
252
N
doub
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
N
256
N
sing
Y
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
8
761
765
10.1038/nsb0901-761
11524677
Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins.
2001
10.2210/pdb1j75/pdb
pdb_00001j75
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-08-16
MARRESEARCH
MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
0.9102
1.0
X11
EMBL/DESY, HAMBURG
0.9102
0.9102
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
2114.398
5'-D(*TP*CP*GP*CP*GP*CP*G)-3'
1
syn
polymer
7328.450
Tumor Stroma and Activated Macrophage Protein DLM-1
N-TERMINAL WINGED-HELIX DOMAIN ZALPHA
1
man
polymer
18.015
water
102
nat
water
no
no
(DT)(DC)(DG)(DC)(DG)(DC)(DG)
TCGCGCG
B
polydeoxyribonucleotide
no
no
GSHMLSTGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG
GSHMLSTGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
Novablue (DE3)
PLASMID
pET28a
2
2.59
52.2
VAPOR DIFFUSION, HANGING DROP
6.00
15% PEG 4000, 0.1M ammonium hydrogen phosphate, 15% ethylene glycol, 0.1M MES pH 6.0, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 297K
297
PEG 4000
1
ammonium hydrogen phosphate
1
ethylene glycol
1
MES
1
0.732
1
19
B
201
B
206
-5.122
B_DC201:DG206_B
1
-7.188
-0.170
-0.068
-0.158
3.584
1
19
B
202
B
205
0.492
B_DG202:DC205_B
2
-9.300
0.402
0.225
-0.184
11.764
1
19
B
203
B
204
-2.625
B_DC203:DG204_B
3
-6.146
-0.324
-0.123
-0.048
-11.764
1
19
B
204
B
203
-2.624
B_DG204:DC203_B
4
-6.146
0.324
-0.123
-0.048
-3.584
1
19
B
205
B
202
0.492
B_DC205:DG202_B
5
-9.300
-0.402
0.225
-0.184
-0.732
1
19
B
206
B
201
-5.122
B_DG206:DC201_B
6
-7.188
0.170
-0.068
-0.158
5.861
-13.673
B
B
201
202
47.126
B
B
206
205
3.383
-9.939
0.124
4.947
BB_DC201DG202:DC205DG206_BB
1
-2.426
-11.504
-9.082
-3.864
-3.609
2.867
-46.004
B
B
202
203
13.122
B
B
205
204
3.283
-10.177
0.157
-1.601
BB_DG202DC203:DG204DC205_BB
2
1.659
2.139
-44.895
2.883
0.337
6.603
-14.385
B
B
203
204
40.744
B
B
204
203
3.917
-9.375
0.000
5.580
BB_DC203DG204:DC203DG204_BB
3
0.000
0.000
-10.923
-6.777
0.000
2.867
-46.004
B
B
204
205
13.122
B
B
203
202
3.283
-10.177
-0.157
-1.601
BB_DG204DC205:DG202DC203_BB
4
-1.659
-2.139
-44.895
2.883
-0.337
5.861
-13.673
B
B
205
206
47.126
B
B
202
201
3.383
-9.939
-0.124
4.947
BB_DC205DG206:DC201DG202_BB
5
2.426
11.504
-9.082
-3.864
3.610
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
pdbx_validate_close_contact
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Advisory
Data collection
Database references
Refinement description
1
0
2001-09-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2011-11-16
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.auth_seq_id_2
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2001-05-15
REL
REL
HOH
water
1QBJ
PDB ENTRY 1QBJ
PDB
experimental model
HOH
304
3
HOH
HOH
304
B
HOH
305
3
HOH
HOH
305
B
HOH
306
3
HOH
HOH
306
B
HOH
307
3
HOH
HOH
307
B
HOH
321
3
HOH
HOH
321
B
HOH
329
3
HOH
HOH
329
B
HOH
332
3
HOH
HOH
332
B
HOH
333
3
HOH
HOH
333
B
HOH
340
3
HOH
HOH
340
B
HOH
342
3
HOH
HOH
342
B
HOH
343
3
HOH
HOH
343
B
HOH
344
3
HOH
HOH
344
B
HOH
345
3
HOH
HOH
345
B
HOH
349
3
HOH
HOH
349
B
HOH
354
3
HOH
HOH
354
B
HOH
355
3
HOH
HOH
355
B
HOH
361
3
HOH
HOH
361
B
HOH
362
3
HOH
HOH
362
B
HOH
373
3
HOH
HOH
373
B
HOH
388
3
HOH
HOH
388
B
HOH
389
3
HOH
HOH
389
B
HOH
390
3
HOH
HOH
390
B
HOH
391
3
HOH
HOH
391
B
HOH
395
3
HOH
HOH
395
B
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
341
3
HOH
HOH
341
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
T
200
n
1
DT
200
B
C
201
n
2
DC
201
B
G
202
n
3
DG
202
B
C
203
n
4
DC
203
B
G
204
n
5
DG
204
B
C
205
n
6
DC
205
B
G
206
n
7
DG
206
B
n
1
104
A
n
2
105
A
n
3
106
A
n
4
107
A
n
5
108
A
n
6
109
A
n
7
110
A
n
8
111
A
n
9
112
A
ASN
113
n
10
ASN
113
A
LEU
114
n
11
LEU
114
A
GLU
115
n
12
GLU
115
A
GLN
116
n
13
GLN
116
A
LYS
117
n
14
LYS
117
A
ILE
118
n
15
ILE
118
A
LEU
119
n
16
LEU
119
A
GLN
120
n
17
GLN
120
A
VAL
121
n
18
VAL
121
A
LEU
122
n
19
LEU
122
A
SER
123
n
20
SER
123
A
ASP
124
n
21
ASP
124
A
ASP
125
n
22
ASP
125
A
GLY
126
n
23
GLY
126
A
GLY
127
n
24
GLY
127
A
PRO
128
n
25
PRO
128
A
VAL
129
n
26
VAL
129
A
LYS
130
n
27
LYS
130
A
ILE
131
n
28
ILE
131
A
GLY
132
n
29
GLY
132
A
GLN
133
n
30
GLN
133
A
LEU
134
n
31
LEU
134
A
VAL
135
n
32
VAL
135
A
LYS
136
n
33
LYS
136
A
LYS
137
n
34
LYS
137
A
CYS
138
n
35
CYS
138
A
GLN
139
n
36
GLN
139
A
VAL
140
n
37
VAL
140
A
PRO
141
n
38
PRO
141
A
LYS
142
n
39
LYS
142
A
LYS
143
n
40
LYS
143
A
THR
144
n
41
THR
144
A
LEU
145
n
42
LEU
145
A
ASN
146
n
43
ASN
146
A
GLN
147
n
44
GLN
147
A
VAL
148
n
45
VAL
148
A
LEU
149
n
46
LEU
149
A
TYR
150
n
47
TYR
150
A
ARG
151
n
48
ARG
151
A
LEU
152
n
49
LEU
152
A
LYS
153
n
50
LYS
153
A
LYS
154
n
51
LYS
154
A
GLU
155
n
52
GLU
155
A
ASP
156
n
53
ASP
156
A
ARG
157
n
54
ARG
157
A
VAL
158
n
55
VAL
158
A
SER
159
n
56
SER
159
A
SER
160
n
57
SER
160
A
PRO
161
n
58
PRO
161
A
GLU
162
n
59
GLU
162
A
PRO
163
n
60
PRO
163
A
ALA
164
n
61
ALA
164
A
THR
165
n
62
THR
165
A
TRP
166
n
63
TRP
166
A
SER
167
n
64
SER
167
A
ILE
168
n
65
ILE
168
A
GLY
169
n
66
GLY
169
A
n
67
170
A
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_455
-x+y-1,y,-z+1/2
crystal symmetry operation
-63.6110000000
0.0000000000
36.1190000000
A
O
VAL
129
B
O
VAL
26
A
N
TRP
166
B
N
TRP
63
A
N
SER
167
B
N
SER
64
A
O
SER
159
B
O
SER
56
1
B
HOH
391
C
HOH
1
A
HOH
335
D
HOH
1
A
HOH
338
D
HOH
1
A
HOH
339
D
HOH
1
A
HOH
399
D
HOH
1
A
CD
LYS
142
B
CD
LYS
39
1
Y
1
A
CE
LYS
142
B
CE
LYS
39
1
Y
1
A
NZ
LYS
142
B
NZ
LYS
39
1
Y
1
A
GLY
104
B
GLY
1
1
Y
1
A
SER
105
B
SER
2
1
Y
1
A
HIS
106
B
HIS
3
1
Y
1
A
MET
107
B
MET
4
1
Y
1
A
LEU
108
B
LEU
5
1
Y
1
A
SER
109
B
SER
6
1
Y
1
A
THR
110
B
THR
7
1
Y
1
A
GLY
111
B
GLY
8
1
Y
1
A
ASP
112
B
ASP
9
1
Y
1
A
GLY
170
B
GLY
67
1
Y
1
B
A
O
O
HOH
HOH
333
350
2.14
1
A
A
OD1
O
ASN
HOH
113
378
2.15
1
2.36
0.30
108.30
110.66
B
B
B
O4'
C1'
N1
DT
DT
DT
200
200
200
N
1
2.33
0.30
108.30
110.63
B
B
B
O4'
C1'
N1
DC
DC
DC
203
203
203
N
21.3
0.08
0.04
0.00
0.08
0.00
-0.12
CNS 1.0 and REFMAC5 used in refinement
0.2400000
0.2180000
0.2250000
0.2250000
1.85
32.00
826
7778
7778
10.6
99.53
RANDOM R VALUE (WORKING + TEST SET) : 0.22152
1
THROUGHOUT
0.00
0.00
MOLECULAR REPLACEMENT
PDB ENTRY 1QBJ
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK PARAMETERS FOR MASK CALCULATION VDW PROBE RADIUS : 1.40 ION PROBE RADIUS : 0.80 SHRINKAGE RADIUS : 0.80
1.85
32.00
102
686
0
140
444
0.019
0.017
1.614
1.59
2.603
1.80
3.444
2.60
5.549
1.61
0.3130000
0.2790000
1.88
53
99.5
37.6
1.85
32.0
1J75
7802
7802
0.000
0.000
0.0660000
1
6.7
23.4
99.8
0.6130000
1.85
1.88
2.9
7.90
99.5
phasing
EPMR
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA
1
N
N
2
N
N
3
N
N
3
N
N
A
ASN
113
B
ASN
10
HELX_P
A
GLY
126
B
GLY
23
1
1
14
A
ILE
131
B
ILE
28
HELX_P
A
GLN
139
B
GLN
36
1
2
9
A
PRO
141
B
PRO
38
HELX_P
A
GLU
155
B
GLU
52
1
3
15
hydrog
WATSON-CRICK
B
DC
201
A
N3
DC
2
1_555
B
DG
206
A
N1
DG
7
11_455
hydrog
WATSON-CRICK
B
DC
201
A
N4
DC
2
1_555
B
DG
206
A
O6
DG
7
11_455
hydrog
WATSON-CRICK
B
DC
201
A
O2
DC
2
1_555
B
DG
206
A
N2
DG
7
11_455
hydrog
WATSON-CRICK
B
DG
202
A
N1
DG
3
1_555
B
DC
205
A
N3
DC
6
11_455
hydrog
WATSON-CRICK
B
DG
202
A
N2
DG
3
1_555
B
DC
205
A
O2
DC
6
11_455
hydrog
WATSON-CRICK
B
DG
202
A
O6
DG
3
1_555
B
DC
205
A
N4
DC
6
11_455
hydrog
WATSON-CRICK
B
DC
203
A
N3
DC
4
1_555
B
DG
204
A
N1
DG
5
11_455
hydrog
WATSON-CRICK
B
DC
203
A
N4
DC
4
1_555
B
DG
204
A
O6
DG
5
11_455
hydrog
WATSON-CRICK
B
DC
203
A
O2
DC
4
1_555
B
DG
204
A
N2
DG
5
11_455
hydrog
WATSON-CRICK
B
DG
204
A
N1
DG
5
1_555
B
DC
203
A
N3
DC
4
11_455
hydrog
WATSON-CRICK
B
DG
204
A
N2
DG
5
1_555
B
DC
203
A
O2
DC
4
11_455
hydrog
WATSON-CRICK
B
DG
204
A
O6
DG
5
1_555
B
DC
203
A
N4
DC
4
11_455
hydrog
WATSON-CRICK
B
DC
205
A
N3
DC
6
1_555
B
DG
202
A
N1
DG
3
11_455
hydrog
WATSON-CRICK
B
DC
205
A
N4
DC
6
1_555
B
DG
202
A
O6
DG
3
11_455
hydrog
WATSON-CRICK
B
DC
205
A
O2
DC
6
1_555
B
DG
202
A
N2
DG
3
11_455
hydrog
WATSON-CRICK
B
DG
206
A
N1
DG
7
1_555
B
DC
201
A
N3
DC
2
11_455
hydrog
WATSON-CRICK
B
DG
206
A
N2
DG
7
1_555
B
DC
201
A
O2
DC
2
11_455
hydrog
WATSON-CRICK
B
DG
206
A
O6
DG
7
1_555
B
DC
201
A
N4
DC
2
11_455
IMMUNE SYSTEM/DNA
PROTEIN-Z-DNA COMPLEX, IMMUNE SYSTEM-DNA COMPLEX
ZBP1_MOUSE
UNP
2
8
Q9QY24
LSTGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIGG
1J75
PDB
1
1J75
8
70
1J75
108
170
Q9QY24
A
1
5
67
200
206
1J75
200
206
1J75
B
2
1
7
1
cloning artifact
GLY
104
1J75
A
Q9QY24
UNP
1
1
cloning artifact
SER
105
1J75
A
Q9QY24
UNP
2
1
cloning artifact
HIS
106
1J75
A
Q9QY24
UNP
3
1
cloning artifact
MET
107
1J75
A
Q9QY24
UNP
4
3
anti-parallel
anti-parallel
A
VAL
129
B
VAL
26
A
LYS
130
B
LYS
27
A
THR
165
B
THR
62
A
ILE
168
B
ILE
65
A
VAL
158
B
VAL
55
A
GLU
162
B
GLU
59
179
P 65 2 2