.017966
.000000
.000000
.000000
.017966
.000000
.000000
.000000
.005399
.00000
.00000
.00000
Burk, D.L.
Hon, W.C.
Leung, A.K.-W.
Berghuis, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
55.662
55.662
185.228
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
40
8756
8764
10.1021/bi010504p
11467935
Structural analyses of nucleotide binding to an aminoglycoside phosphotransferase.
2001
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
89
887
895
10.1016/S0092-8674(00)80274-3
Structure of an Enzyme Required for Antibiotic Resistance Reveals Homology to Eukaryotic Protein Kinases
1997
10.2210/pdb1j7i/pdb
pdb_00001j7i
1.000000
.000000
.000000
.000000
1.000000
.000000
.000000
.000000
1.000000
.00000
.00000
.00000
298
1
mirrors
IMAGE PLATE
RIGAKU RAXIS IIC
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
31012.045
AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE
2.7.1.95
1
man
polymer
APH(3')III
no
no
MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFE
RHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVEL
FFDLLGIKPDWEKIKYYILLDELF
MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFE
RHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVEL
FFDLLGIKPDWEKIKYYILLDELF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Enterococcus
Escherichia
Escherichia coli
sample
1351
Enterococcus faecalis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pPCRG6
1
2.31
46.81
VAPOR DIFFUSION, HANGING DROP
7.5
HEPES, magnesium chloride, ammonium sulfate, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2001-08-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
1J7L contains the the same enzyme complexed with ADP
1J7U contains the the same enzyme complexed with AMPPNP
RCSB
Y
RCSB
2001-05-16
REL
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
ARG
5
n
5
ARG
5
A
ILE
6
n
6
ILE
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
LEU
10
n
10
LEU
10
A
LYS
11
n
11
LYS
11
A
LYS
12
n
12
LYS
12
A
LEU
13
n
13
LEU
13
A
ILE
14
n
14
ILE
14
A
GLU
15
n
15
GLU
15
A
LYS
16
n
16
LYS
16
A
TYR
17
n
17
TYR
17
A
ARG
18
n
18
ARG
18
A
CYS
19
n
19
CYS
19
A
VAL
20
n
20
VAL
20
A
LYS
21
n
21
LYS
21
A
ASP
22
n
22
ASP
22
A
THR
23
n
23
THR
23
A
GLU
24
n
24
GLU
24
A
GLY
25
n
25
GLY
25
A
MET
26
n
26
MET
26
A
SER
27
n
27
SER
27
A
PRO
28
n
28
PRO
28
A
ALA
29
n
29
ALA
29
A
LYS
30
n
30
LYS
30
A
VAL
31
n
31
VAL
31
A
TYR
32
n
32
TYR
32
A
LYS
33
n
33
LYS
33
A
LEU
34
n
34
LEU
34
A
VAL
35
n
35
VAL
35
A
GLY
36
n
36
GLY
36
A
GLU
37
n
37
GLU
37
A
ASN
38
n
38
ASN
38
A
GLU
39
n
39
GLU
39
A
ASN
40
n
40
ASN
40
A
LEU
41
n
41
LEU
41
A
TYR
42
n
42
TYR
42
A
LEU
43
n
43
LEU
43
A
LYS
44
n
44
LYS
44
A
MET
45
n
45
MET
45
A
THR
46
n
46
THR
46
A
ASP
47
n
47
ASP
47
A
SER
48
n
48
SER
48
A
ARG
49
n
49
ARG
49
A
TYR
50
n
50
TYR
50
A
LYS
51
n
51
LYS
51
A
GLY
52
n
52
GLY
52
A
THR
53
n
53
THR
53
A
THR
54
n
54
THR
54
A
TYR
55
n
55
TYR
55
A
ASP
56
n
56
ASP
56
A
VAL
57
n
57
VAL
57
A
GLU
58
n
58
GLU
58
A
ARG
59
n
59
ARG
59
A
GLU
60
n
60
GLU
60
A
LYS
61
n
61
LYS
61
A
ASP
62
n
62
ASP
62
A
MET
63
n
63
MET
63
A
MET
64
n
64
MET
64
A
LEU
65
n
65
LEU
65
A
TRP
66
n
66
TRP
66
A
LEU
67
n
67
LEU
67
A
GLU
68
n
68
GLU
68
A
GLY
69
n
69
GLY
69
A
LYS
70
n
70
LYS
70
A
LEU
71
n
71
LEU
71
A
PRO
72
n
72
PRO
72
A
VAL
73
n
73
VAL
73
A
PRO
74
n
74
PRO
74
A
LYS
75
n
75
LYS
75
A
VAL
76
n
76
VAL
76
A
LEU
77
n
77
LEU
77
A
HIS
78
n
78
HIS
78
A
PHE
79
n
79
PHE
79
A
GLU
80
n
80
GLU
80
A
ARG
81
n
81
ARG
81
A
HIS
82
n
82
HIS
82
A
ASP
83
n
83
ASP
83
A
GLY
84
n
84
GLY
84
A
TRP
85
n
85
TRP
85
A
SER
86
n
86
SER
86
A
ASN
87
n
87
ASN
87
A
LEU
88
n
88
LEU
88
A
LEU
89
n
89
LEU
89
A
MET
90
n
90
MET
90
A
SER
91
n
91
SER
91
A
GLU
92
n
92
GLU
92
A
ALA
93
n
93
ALA
93
A
ASP
94
n
94
ASP
94
A
GLY
95
n
95
GLY
95
A
VAL
96
n
96
VAL
96
A
LEU
97
n
97
LEU
97
A
CYS
98
n
98
CYS
98
A
SER
99
n
99
SER
99
A
GLU
100
n
100
GLU
100
A
GLU
101
n
101
GLU
101
A
TYR
102
n
102
TYR
102
A
GLU
103
n
103
GLU
103
A
ASP
104
n
104
ASP
104
A
GLU
105
n
105
GLU
105
A
GLN
106
n
106
GLN
106
A
SER
107
n
107
SER
107
A
PRO
108
n
108
PRO
108
A
GLU
109
n
109
GLU
109
A
LYS
110
n
110
LYS
110
A
ILE
111
n
111
ILE
111
A
ILE
112
n
112
ILE
112
A
GLU
113
n
113
GLU
113
A
LEU
114
n
114
LEU
114
A
TYR
115
n
115
TYR
115
A
ALA
116
n
116
ALA
116
A
GLU
117
n
117
GLU
117
A
CYS
118
n
118
CYS
118
A
ILE
119
n
119
ILE
119
A
ARG
120
n
120
ARG
120
A
LEU
121
n
121
LEU
121
A
PHE
122
n
122
PHE
122
A
HIS
123
n
123
HIS
123
A
SER
124
n
124
SER
124
A
ILE
125
n
125
ILE
125
A
ASP
126
n
126
ASP
126
A
ILE
127
n
127
ILE
127
A
SER
128
n
128
SER
128
A
ASP
129
n
129
ASP
129
A
CYS
130
n
130
CYS
130
A
PRO
131
n
131
PRO
131
A
TYR
132
n
132
TYR
132
A
THR
133
n
133
THR
133
A
ASN
134
n
134
ASN
134
A
SER
135
n
135
SER
135
A
LEU
136
n
136
LEU
136
A
ASP
137
n
137
ASP
137
A
SER
138
n
138
SER
138
A
ARG
139
n
139
ARG
139
A
LEU
140
n
140
LEU
140
A
ALA
141
n
141
ALA
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
ASP
144
n
144
ASP
144
A
TYR
145
n
145
TYR
145
A
LEU
146
n
146
LEU
146
A
LEU
147
n
147
LEU
147
A
ASN
148
n
148
ASN
148
A
ASN
149
n
149
ASN
149
A
ASP
150
n
150
ASP
150
A
LEU
151
n
151
LEU
151
A
ALA
152
n
152
ALA
152
A
ASP
153
n
153
ASP
153
A
VAL
154
n
154
VAL
154
A
ASP
155
n
155
ASP
155
A
CYS
156
n
156
CYS
156
A
GLU
157
n
157
GLU
157
A
ASN
158
n
158
ASN
158
A
TRP
159
n
159
TRP
159
A
GLU
160
n
160
GLU
160
A
GLU
161
n
161
GLU
161
A
ASP
162
n
162
ASP
162
A
THR
163
n
163
THR
163
A
PRO
164
n
164
PRO
164
A
PHE
165
n
165
PHE
165
A
LYS
166
n
166
LYS
166
A
ASP
167
n
167
ASP
167
A
PRO
168
n
168
PRO
168
A
ARG
169
n
169
ARG
169
A
GLU
170
n
170
GLU
170
A
LEU
171
n
171
LEU
171
A
TYR
172
n
172
TYR
172
A
ASP
173
n
173
ASP
173
A
PHE
174
n
174
PHE
174
A
LEU
175
n
175
LEU
175
A
LYS
176
n
176
LYS
176
A
THR
177
n
177
THR
177
A
GLU
178
n
178
GLU
178
A
LYS
179
n
179
LYS
179
A
PRO
180
n
180
PRO
180
A
GLU
181
n
181
GLU
181
A
GLU
182
n
182
GLU
182
A
GLU
183
n
183
GLU
183
A
LEU
184
n
184
LEU
184
A
VAL
185
n
185
VAL
185
A
PHE
186
n
186
PHE
186
A
SER
187
n
187
SER
187
A
HIS
188
n
188
HIS
188
A
GLY
189
n
189
GLY
189
A
ASP
190
n
190
ASP
190
A
LEU
191
n
191
LEU
191
A
GLY
192
n
192
GLY
192
A
ASP
193
n
193
ASP
193
A
SER
194
n
194
SER
194
A
ASN
195
n
195
ASN
195
A
ILE
196
n
196
ILE
196
A
PHE
197
n
197
PHE
197
A
VAL
198
n
198
VAL
198
A
LYS
199
n
199
LYS
199
A
ASP
200
n
200
ASP
200
A
GLY
201
n
201
GLY
201
A
LYS
202
n
202
LYS
202
A
VAL
203
n
203
VAL
203
A
SER
204
n
204
SER
204
A
GLY
205
n
205
GLY
205
A
PHE
206
n
206
PHE
206
A
ILE
207
n
207
ILE
207
A
ASP
208
n
208
ASP
208
A
LEU
209
n
209
LEU
209
A
GLY
210
n
210
GLY
210
A
ARG
211
n
211
ARG
211
A
SER
212
n
212
SER
212
A
GLY
213
n
213
GLY
213
A
ARG
214
n
214
ARG
214
A
ALA
215
n
215
ALA
215
A
ASP
216
n
216
ASP
216
A
LYS
217
n
217
LYS
217
A
TRP
218
n
218
TRP
218
A
TYR
219
n
219
TYR
219
A
ASP
220
n
220
ASP
220
A
ILE
221
n
221
ILE
221
A
ALA
222
n
222
ALA
222
A
PHE
223
n
223
PHE
223
A
CYS
224
n
224
CYS
224
A
VAL
225
n
225
VAL
225
A
ARG
226
n
226
ARG
226
A
SER
227
n
227
SER
227
A
ILE
228
n
228
ILE
228
A
ARG
229
n
229
ARG
229
A
GLU
230
n
230
GLU
230
A
ASP
231
n
231
ASP
231
A
ILE
232
n
232
ILE
232
A
GLY
233
n
233
GLY
233
A
GLU
234
n
234
GLU
234
A
GLU
235
n
235
GLU
235
A
GLN
236
n
236
GLN
236
A
TYR
237
n
237
TYR
237
A
VAL
238
n
238
VAL
238
A
GLU
239
n
239
GLU
239
A
LEU
240
n
240
LEU
240
A
PHE
241
n
241
PHE
241
A
PHE
242
n
242
PHE
242
A
ASP
243
n
243
ASP
243
A
LEU
244
n
244
LEU
244
A
LEU
245
n
245
LEU
245
A
GLY
246
n
246
GLY
246
A
ILE
247
n
247
ILE
247
A
LYS
248
n
248
LYS
248
A
PRO
249
n
249
PRO
249
A
ASP
250
n
250
ASP
250
A
TRP
251
n
251
TRP
251
A
GLU
252
n
252
GLU
252
A
LYS
253
n
253
LYS
253
A
ILE
254
n
254
ILE
254
A
LYS
255
n
255
LYS
255
A
TYR
256
n
256
TYR
256
A
TYR
257
n
257
TYR
257
A
ILE
258
n
258
ILE
258
A
LEU
259
n
259
LEU
259
A
LEU
260
n
260
LEU
260
A
ASP
261
n
261
ASP
261
A
GLU
262
n
262
GLU
262
A
LEU
263
n
263
LEU
263
A
PHE
264
n
264
PHE
264
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_645
y+1,x-1,-z
crystal symmetry operation
55.6620000000
-55.6620000000
0.0000000000
A
O
VAL
20
A
O
VAL
20
A
N
LYS
33
A
N
LYS
33
A
N
LEU
34
A
N
LEU
34
A
O
LEU
41
A
O
LEU
41
A
O
THR
46
A
O
THR
46
A
N
SER
86
A
N
SER
86
A
O
LEU
89
A
O
LEU
89
A
N
LEU
77
A
N
LEU
77
A
O
VAL
96
A
O
VAL
96
A
N
VAL
198
A
N
VAL
198
A
N
LYS
199
A
N
LYS
199
A
O
LYS
202
A
O
LYS
202
A
N
SER
187
A
N
SER
187
A
O
GLY
213
A
O
GLY
213
1
A
CB
SER
27
A
CB
SER
27
0
Y
1
A
OG
SER
27
A
OG
SER
27
0
Y
1
A
CD
LYS
30
A
CD
LYS
30
0
Y
1
A
CE
LYS
30
A
CE
LYS
30
0
Y
1
A
NZ
LYS
30
A
NZ
LYS
30
0
Y
1
A
CG
ASP
83
A
CG
ASP
83
0
Y
1
A
OD1
ASP
83
A
OD1
ASP
83
0
Y
1
A
OD2
ASP
83
A
OD2
ASP
83
0
Y
1
A
CB
TYR
102
A
CB
TYR
102
0
Y
1
A
CG
TYR
102
A
CG
TYR
102
0
Y
1
A
CD1
TYR
102
A
CD1
TYR
102
0
Y
1
A
CD2
TYR
102
A
CD2
TYR
102
0
Y
1
A
CE1
TYR
102
A
CE1
TYR
102
0
Y
1
A
CE2
TYR
102
A
CE2
TYR
102
0
Y
1
A
CZ
TYR
102
A
CZ
TYR
102
0
Y
1
A
OH
TYR
102
A
OH
TYR
102
0
Y
1
A
CG
GLU
109
A
CG
GLU
109
0
Y
1
A
CD
GLU
109
A
CD
GLU
109
0
Y
1
A
OE1
GLU
109
A
OE1
GLU
109
0
Y
1
A
OE2
GLU
109
A
OE2
GLU
109
0
Y
1
A
CD
LYS
110
A
CD
LYS
110
0
Y
1
A
CE
LYS
110
A
CE
LYS
110
0
Y
1
A
NZ
LYS
110
A
NZ
LYS
110
0
Y
1
A
CG
ASP
137
A
CG
ASP
137
0
Y
1
A
OD1
ASP
137
A
OD1
ASP
137
0
Y
1
A
OD2
ASP
137
A
OD2
ASP
137
0
Y
1
A
CD
LYS
166
A
CD
LYS
166
0
Y
1
A
CE
LYS
166
A
CE
LYS
166
0
Y
1
A
NZ
LYS
166
A
NZ
LYS
166
0
Y
1
A
CG
GLU
181
A
CG
GLU
181
0
Y
1
A
CD
GLU
181
A
CD
GLU
181
0
Y
1
A
OE1
GLU
181
A
OE1
GLU
181
0
Y
1
A
OE2
GLU
181
A
OE2
GLU
181
0
Y
1
A
CG
LEU
245
A
CG
LEU
245
0
Y
1
A
CD1
LEU
245
A
CD1
LEU
245
0
Y
1
A
CD2
LEU
245
A
CD2
LEU
245
0
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
MET
4
A
MET
4
1
Y
1
A
GLU
24
A
GLU
24
0
Y
1
A
GLY
25
A
GLY
25
0
Y
1
A
GLU
103
A
GLU
103
0
Y
1
A
ASP
104
A
ASP
104
0
Y
1
A
GLU
105
A
GLU
105
0
Y
1
A
ASP
150
A
ASP
150
0
Y
1
A
A
SG
SG
CYS
CYS
19
156
1.96
1_555
7_645
1
A
CYS
19
58.06
114.57
1
A
SER
27
-129.49
-87.02
1
A
ASP
47
-84.06
-126.74
1
A
THR
54
-58.65
3.64
1
A
LEU
67
-64.30
6.80
1
A
LYS
70
-108.39
-71.20
1
A
SER
91
-70.00
-163.78
1
A
GLU
101
168.10
61.60
1
A
TYR
102
-163.31
-1.31
1
A
ASP
104
-107.78
-164.76
1
A
GLU
105
-95.21
-72.95
1
A
SER
107
178.43
-16.75
1
A
ASP
126
-66.08
93.38
1
A
ILE
127
-78.09
21.31
1
A
ASP
129
-92.82
39.78
1
A
ASP
150
45.13
14.21
1
A
ALA
152
-134.90
-149.56
1
A
ASP
155
-54.73
-100.24
1
A
PRO
180
-77.62
-166.75
1
A
ASP
190
-156.97
50.40
1
A
LEU
191
-67.98
99.66
1
A
ASP
208
61.87
69.71
1
A
ASP
216
-34.12
140.46
1
A
TRP
251
-30.52
-37.38
PROTEIN_REP.PARAM
PROTEIN.TOP
30.8
.83
.00
.00
.83
.00
-1.66
0.3060000
.014
0.2190000
3.20
35.60
503
4829
4829
10.4
91.3
RANDOM
73178.08
.00
1
GROUP
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
128.9
.3476
.52
.34
5.00
.58
.35
3.20
35.60
0
2148
0
0
2148
.008
1.4
23.2
1.24
0.3370000
.041
0.2710000
3.40
67
622
6
9.7
81.7
3.2
50
1J7I
5165
5165
0
0
0.1390000
1
7.2
3.1
97.3
0.4950000
3.2
3.31
2.3
96.7
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa Apoenzyme
1
N
N
A
SER
7
A
SER
7
HELX_P
A
GLU
15
A
GLU
15
1
1
9
A
ASP
56
A
ASP
56
HELX_P
A
LEU
67
A
LEU
67
1
2
12
A
SER
107
A
SER
107
HELX_P
A
HIS
123
A
HIS
123
1
3
17
A
SER
135
A
SER
135
HELX_P
A
ASN
148
A
ASN
148
1
4
14
A
ASN
158
A
ASN
158
HELX_P
A
THR
163
A
THR
163
1
5
6
A
ASP
167
A
ASP
167
HELX_P
A
LYS
179
A
LYS
179
1
6
13
A
LYS
217
A
LYS
217
HELX_P
A
ILE
232
A
ILE
232
1
7
16
A
GLN
236
A
GLN
236
HELX_P
A
LEU
245
A
LEU
245
1
8
10
A
ASP
250
A
ASP
250
HELX_P
A
PHE
264
A
PHE
264
1
9
15
TRANSFERASE
antibiotic resistance, kinase, ATP-binding, TRANSFERASE
KKA3_ENTFA
UNP
1
1
P0A3Y5
MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFE
RHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVEL
FFDLLGIKPDWEKIKYYILLDELF
1
264
1J7I
1
264
P0A3Y5
A
1
1
264
5
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
20
A
VAL
20
A
LYS
21
A
LYS
21
A
LYS
30
A
LYS
30
A
VAL
35
A
VAL
35
A
ASN
40
A
ASN
40
A
THR
46
A
THR
46
A
SER
86
A
SER
86
A
MET
90
A
MET
90
A
VAL
76
A
VAL
76
A
ARG
81
A
ARG
81
A
VAL
96
A
VAL
96
A
LEU
97
A
LEU
97
A
ILE
196
A
ILE
196
A
LYS
199
A
LYS
199
A
LYS
202
A
LYS
202
A
PHE
206
A
PHE
206
A
LEU
184
A
LEU
184
A
SER
187
A
SER
187
A
GLY
213
A
GLY
213
A
ASP
216
A
ASP
216
96
P 43 21 2