.022386 .012925 .000000 .000000 .025850 .000000 .000000 .000000 .010241 .00000 .00000 .00000 Ratnaparkhi, G.S. Varadarajan, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 44.670 44.670 97.650 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 276 28789 28798 10.1074/jbc.M101906200 11373282 Osmolytes stabilize ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states. 2001 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 293.0 1 IMAGE PLATE 1998-08-26 MARRESEARCH mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 1750.952 RIBONUCLEASE PANCREATIC 3.1.27.5 S PEPTIDE 1 syn polymer 11555.981 RIBONUCLEASE PANCREATIC 3.1.27.5 S PROTEIN 1 nat polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 39 nat water RNASE S RNASE S no yes KETAAAKFERQHMDS(NH2) KETAAAKFERQHMDSX A polypeptide(L) no no SSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTT QANKHIIVACEGNPYVPVHFDASV SSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTT QANKHIIVACEGNPYVPVHFDASV B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 pancreas Bos taurus 1 2.11 41.79 VAPOR DIFFUSION, SITTING DROP 4.75 Ammonium Sulfate, cesium Chloride, pH 4.75, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K 293.0 software pdbx_database_related repository Initial release Version format compliance Version format compliance Refinement description Database references 1 0 2001-06-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2017-11-29 _pdbx_database_related.db_id 1J7Z IS RIBONUCLEASE PANCREATIC 1J80 IS RIBONUCLEASE PANCREATIC RCSB Y RCSB 2001-05-19 REL REL SO4 SULFATE ION HOH water This peptide was chemically synthesized. It is naturally found in Bos Taurus sample SO4 125 3 SO4 SO4 125 B WAT 218 4 HOH HOH 218 A WAT 223 4 HOH HOH 223 A WAT 247 4 HOH HOH 247 A WAT 259 4 HOH HOH 259 A WAT 201 4 HOH HOH 201 B WAT 203 4 HOH HOH 203 B WAT 205 4 HOH HOH 205 B WAT 206 4 HOH HOH 206 B WAT 207 4 HOH HOH 207 B WAT 209 4 HOH HOH 209 B WAT 210 4 HOH HOH 210 B WAT 211 4 HOH HOH 211 B WAT 212 4 HOH HOH 212 B WAT 213 4 HOH HOH 213 B WAT 214 4 HOH HOH 214 B WAT 215 4 HOH HOH 215 B WAT 216 4 HOH HOH 216 B WAT 217 4 HOH HOH 217 B WAT 220 4 HOH HOH 220 B WAT 221 4 HOH HOH 221 B WAT 222 4 HOH HOH 222 B WAT 224 4 HOH HOH 224 B WAT 226 4 HOH HOH 226 B WAT 228 4 HOH HOH 228 B WAT 231 4 HOH HOH 231 B WAT 232 4 HOH HOH 232 B WAT 235 4 HOH HOH 235 B WAT 236 4 HOH HOH 236 B WAT 238 4 HOH HOH 238 B WAT 239 4 HOH HOH 239 B WAT 240 4 HOH HOH 240 B WAT 241 4 HOH HOH 241 B WAT 243 4 HOH HOH 243 B WAT 250 4 HOH HOH 250 B WAT 255 4 HOH HOH 255 B WAT 260 4 HOH HOH 260 B WAT 262 4 HOH HOH 262 B WAT 265 4 HOH HOH 265 B WAT 310 4 HOH HOH 310 B LYS 1 n 1 LYS 1 A GLU 2 n 2 GLU 2 A THR 3 n 3 THR 3 A ALA 4 n 4 ALA 4 A ALA 5 n 5 ALA 5 A ALA 6 n 6 ALA 6 A LYS 7 n 7 LYS 7 A PHE 8 n 8 PHE 8 A GLU 9 n 9 GLU 9 A ARG 10 n 10 ARG 10 A GLN 11 n 11 GLN 11 A HIS 12 n 12 HIS 12 A MET 13 n 13 MET 13 A ASP 14 n 14 ASP 14 A SER 15 n 15 SER 15 A SER 15 n 16 NH2 16 A n 1 21 B n 2 22 B n 3 23 B ASN 24 n 4 ASN 24 B TYR 25 n 5 TYR 25 B CYS 26 n 6 CYS 26 B ASN 27 n 7 ASN 27 B GLN 28 n 8 GLN 28 B MET 29 n 9 MET 29 B MET 30 n 10 MET 30 B LYS 31 n 11 LYS 31 B SER 32 n 12 SER 32 B ARG 33 n 13 ARG 33 B ASN 34 n 14 ASN 34 B LEU 35 n 15 LEU 35 B THR 36 n 16 THR 36 B LYS 37 n 17 LYS 37 B ASP 38 n 18 ASP 38 B ARG 39 n 19 ARG 39 B CYS 40 n 20 CYS 40 B LYS 41 n 21 LYS 41 B PRO 42 n 22 PRO 42 B VAL 43 n 23 VAL 43 B ASN 44 n 24 ASN 44 B THR 45 n 25 THR 45 B PHE 46 n 26 PHE 46 B VAL 47 n 27 VAL 47 B HIS 48 n 28 HIS 48 B GLU 49 n 29 GLU 49 B SER 50 n 30 SER 50 B LEU 51 n 31 LEU 51 B ALA 52 n 32 ALA 52 B ASP 53 n 33 ASP 53 B VAL 54 n 34 VAL 54 B GLN 55 n 35 GLN 55 B ALA 56 n 36 ALA 56 B VAL 57 n 37 VAL 57 B CYS 58 n 38 CYS 58 B SER 59 n 39 SER 59 B GLN 60 n 40 GLN 60 B LYS 61 n 41 LYS 61 B ASN 62 n 42 ASN 62 B VAL 63 n 43 VAL 63 B ALA 64 n 44 ALA 64 B CYS 65 n 45 CYS 65 B LYS 66 n 46 LYS 66 B ASN 67 n 47 ASN 67 B GLY 68 n 48 GLY 68 B GLN 69 n 49 GLN 69 B THR 70 n 50 THR 70 B ASN 71 n 51 ASN 71 B CYS 72 n 52 CYS 72 B TYR 73 n 53 TYR 73 B GLN 74 n 54 GLN 74 B SER 75 n 55 SER 75 B TYR 76 n 56 TYR 76 B SER 77 n 57 SER 77 B THR 78 n 58 THR 78 B MET 79 n 59 MET 79 B SER 80 n 60 SER 80 B ILE 81 n 61 ILE 81 B THR 82 n 62 THR 82 B ASP 83 n 63 ASP 83 B CYS 84 n 64 CYS 84 B ARG 85 n 65 ARG 85 B GLU 86 n 66 GLU 86 B THR 87 n 67 THR 87 B GLY 88 n 68 GLY 88 B SER 89 n 69 SER 89 B SER 90 n 70 SER 90 B LYS 91 n 71 LYS 91 B TYR 92 n 72 TYR 92 B PRO 93 n 73 PRO 93 B ASN 94 n 74 ASN 94 B CYS 95 n 75 CYS 95 B ALA 96 n 76 ALA 96 B TYR 97 n 77 TYR 97 B LYS 98 n 78 LYS 98 B THR 99 n 79 THR 99 B THR 100 n 80 THR 100 B GLN 101 n 81 GLN 101 B ALA 102 n 82 ALA 102 B ASN 103 n 83 ASN 103 B LYS 104 n 84 LYS 104 B HIS 105 n 85 HIS 105 B ILE 106 n 86 ILE 106 B ILE 107 n 87 ILE 107 B VAL 108 n 88 VAL 108 B ALA 109 n 89 ALA 109 B CYS 110 n 90 CYS 110 B GLU 111 n 91 GLU 111 B GLY 112 n 92 GLY 112 B ASN 113 n 93 ASN 113 B PRO 114 n 94 PRO 114 B TYR 115 n 95 TYR 115 B VAL 116 n 96 VAL 116 B PRO 117 n 97 PRO 117 B VAL 118 n 98 VAL 118 B HIS 119 n 99 HIS 119 B PHE 120 n 100 PHE 120 B ASP 121 n 101 ASP 121 B ALA 122 n 102 ALA 122 B SER 123 n 103 SER 123 B VAL 124 n 104 VAL 124 B author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 4 tetrameric 1720 -23 6490 5390 -52 11030 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 B N PHE 46 B N PHE 26 B O THR 82 B O THR 62 B O ARG 85 B O ARG 65 B N LYS 98 B N LYS 78 B N VAL 63 B N VAL 43 B O CYS 72 B O CYS 52 B N TYR 73 B N TYR 53 B O VAL 108 B O VAL 88 B N GLU 111 B N GLU 91 B O VAL 116 B O VAL 96 1 B SER 21 B SER 1 1 Y 1 B SER 22 B SER 2 1 Y 1 B SER 23 B SER 3 1 Y 1 B B O O HOH HOH 240 240 2.09 1_555 4_555 1 B ARG 39 178.70 167.07 1 B HIS 48 -102.19 41.60 1 B GLN 60 -100.97 -131.45 1 B ASN 71 -105.44 45.26 1 B ALA 122 -175.50 -176.12 20.9 .00 .00 .00 .00 .00 .00 0.25 .012 0.21 0.21 2.20 10.00 465 4530 10.3 75.0 RANDOM 10000000.00 .00 1 RESTRAINED THROUGHOUT 1.0 MOLECULAR REPLACEMENT .30 .28 3.80 .15 .28 2.20 10.00 117 1262 5 0 1140 .007 1.1 27.8 .55 2.62 1.50 3.93 2.00 6.29 2.00 10.59 2.50 0.281 .044 0.263 2.31 41 383 7 9.7 50.7 24.4 2.1 10.0 1J81 5300 0.076 1 0.11 2.1 2.3 3 data scaling XDS data reduction XDS model building X-PLOR refinement X-PLOR 3.851 phasing X-PLOR RIBONUCLEASE PANCREATIC (E.C.3.1.27.5) Osmolyte Stabilization of RNase 1 N N 2 N N 3 N N 4 N N 4 N N A THR 3 A THR 3 HELX_P A MET 13 A MET 13 1 1 11 B ASN 24 B ASN 4 HELX_P B ARG 33 B ARG 13 1 2 10 B SER 50 B SER 30 HELX_P B ALA 56 B ALA 36 1 3 7 B VAL 57 B VAL 37 HELX_P B GLN 60 B GLN 40 5 4 4 disulf 2.024 B CYS 26 B SG CYS 6 1_555 B CYS 84 B SG CYS 64 1_555 disulf 2.019 B CYS 40 B SG CYS 20 1_555 B CYS 95 B SG CYS 75 1_555 disulf 2.032 B CYS 58 B SG CYS 38 1_555 B CYS 110 B SG CYS 90 1_555 disulf 2.035 B CYS 65 B SG CYS 45 1_555 B CYS 72 B SG CYS 52 1_555 covale 1.331 A SER 15 A C SER 15 1_555 A NH2 16 A N NH2 16 1_555 HYDROLASE OSMOLYTE SOAKING, SARCOSINE, TRIMETHYLAMINE-N-OXIDE, BETAINE, TAURINE, hydrolase B TYR 92 B TYR 72 1 B PRO 93 B PRO 73 0.17 B ASN 113 B ASN 93 1 B PRO 114 B PRO 94 0.08 RNAS1_BOVIN UNP 1 27 P61823 KETAAAKFERQHMDS RNAS1_BOVIN UNP 2 47 P61823 SSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTT QANKHIIVACEGNPYVPVHFDASV 27 41 1J81 1 15 P61823 A 1 1 15 47 150 1J81 21 124 P61823 B 2 1 104 1 AMIDATION NH2 16 1J81 A P61823 UNP 16 3 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B VAL 43 B VAL 23 B VAL 47 B VAL 27 B MET 79 B MET 59 B GLU 86 B GLU 66 B TYR 97 B TYR 77 B LYS 104 B LYS 84 B LYS 61 B LYS 41 B VAL 63 B VAL 43 B CYS 72 B CYS 52 B GLN 74 B GLN 54 B ILE 106 B ILE 86 B GLU 111 B GLU 91 B VAL 116 B VAL 96 B SER 123 B SER 103 BINDING SITE FOR RESIDUE SO4 B 125 Software 6 A GLN 11 A GLN 11 6 1_555 A HIS 12 A HIS 12 6 1_555 B HIS 119 B HIS 99 6 1_555 B PHE 120 B PHE 100 6 1_555 B HOH 215 E HOH 6 1_555 B HOH 236 E HOH 6 1_555 152 P 31 2 1