0.024771 0.000000 0.000000 0.000000 0.024771 0.000000 0.000000 0.000000 0.006031 0.00000 0.00000 0.00000 Lim, K. Zhang, H. Toedt, J. Tempcyzk, A. Krajewski, W. Howard, A. Eisenstein, E. Herzberg, O. Structure 2 Function Project (S2F) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.0 90.0 90.0 40.37 40.37 165.82 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Proteins PSFGEY 0867 0887-3585 51 56 67 10.1002/prot.10323 12596263 Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): A cofactor bound at a site formed by a knot 2003 10.2210/pdb1j85/pdb pdb_00001j85 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-01-27 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0 1.0 17-ID APS 1.0 SYNCHROTRON APS BEAMLINE 17-ID 18427.414 YibK 2.1.1.- 1 man polymer 18.015 water 124 nat water HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE HI0766 no no MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFALTT KGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPEVK MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFALTT KGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPEVK A HI0766 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Haemophilus Haemophilus influenzae KW20 Escherichia Escherichia coli sample HI0766 71421 Haemophilus influenzae Rd 469008 Escherichia coli BL21(DE3) BL21(DE3) pET17b 1 1.83 32.87 VAPOR DIFFUSION, HANGING DROP 4.6 protein solution (12.5 mg/ml) in 50mM Tris-HCl pH7.5, 0.1mM EDTA, 0.1mM DTT; crystallization condition - 20 % polyethylene glycol monomethylether 2000, 0.1 M Na Acetate, 0.2 M Ammonium acetate, 3 % ethylene glycol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 Structure 2 Function Project S2F chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Derived calculations Source and taxonomy Version format compliance Data collection Database references 1 0 2003-02-25 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession Y RCSB Y RCSB 2001-05-20 REL REL HOH water HOH 201 2 HOH HOH 201 A HOH 202 2 HOH HOH 202 A HOH 203 2 HOH HOH 203 A HOH 204 2 HOH HOH 204 A HOH 205 2 HOH HOH 205 A HOH 206 2 HOH HOH 206 A HOH 207 2 HOH HOH 207 A HOH 208 2 HOH HOH 208 A HOH 209 2 HOH HOH 209 A HOH 210 2 HOH HOH 210 A HOH 211 2 HOH HOH 211 A HOH 212 2 HOH HOH 212 A HOH 213 2 HOH HOH 213 A HOH 214 2 HOH HOH 214 A HOH 215 2 HOH HOH 215 A HOH 216 2 HOH HOH 216 A HOH 217 2 HOH HOH 217 A HOH 218 2 HOH HOH 218 A HOH 219 2 HOH HOH 219 A HOH 220 2 HOH HOH 220 A HOH 221 2 HOH HOH 221 A HOH 222 2 HOH HOH 222 A HOH 223 2 HOH HOH 223 A HOH 224 2 HOH HOH 224 A HOH 225 2 HOH HOH 225 A HOH 226 2 HOH HOH 226 A HOH 227 2 HOH HOH 227 A HOH 228 2 HOH HOH 228 A HOH 229 2 HOH HOH 229 A HOH 230 2 HOH HOH 230 A HOH 231 2 HOH HOH 231 A HOH 232 2 HOH HOH 232 A HOH 233 2 HOH HOH 233 A HOH 234 2 HOH HOH 234 A HOH 235 2 HOH HOH 235 A HOH 236 2 HOH HOH 236 A HOH 237 2 HOH HOH 237 A HOH 238 2 HOH HOH 238 A HOH 239 2 HOH HOH 239 A HOH 240 2 HOH HOH 240 A HOH 241 2 HOH HOH 241 A HOH 242 2 HOH HOH 242 A HOH 243 2 HOH HOH 243 A HOH 244 2 HOH HOH 244 A HOH 245 2 HOH HOH 245 A HOH 246 2 HOH HOH 246 A HOH 247 2 HOH HOH 247 A HOH 248 2 HOH HOH 248 A HOH 249 2 HOH HOH 249 A HOH 250 2 HOH HOH 250 A HOH 251 2 HOH HOH 251 A HOH 252 2 HOH HOH 252 A HOH 253 2 HOH HOH 253 A HOH 254 2 HOH HOH 254 A HOH 255 2 HOH HOH 255 A HOH 256 2 HOH HOH 256 A HOH 257 2 HOH HOH 257 A HOH 258 2 HOH HOH 258 A HOH 259 2 HOH HOH 259 A HOH 260 2 HOH HOH 260 A HOH 261 2 HOH HOH 261 A HOH 262 2 HOH HOH 262 A HOH 263 2 HOH HOH 263 A HOH 264 2 HOH HOH 264 A HOH 265 2 HOH HOH 265 A HOH 266 2 HOH HOH 266 A HOH 267 2 HOH HOH 267 A HOH 268 2 HOH HOH 268 A HOH 269 2 HOH HOH 269 A HOH 270 2 HOH HOH 270 A HOH 271 2 HOH HOH 271 A HOH 272 2 HOH HOH 272 A HOH 273 2 HOH HOH 273 A HOH 274 2 HOH HOH 274 A HOH 275 2 HOH HOH 275 A HOH 276 2 HOH HOH 276 A HOH 277 2 HOH HOH 277 A HOH 278 2 HOH HOH 278 A HOH 279 2 HOH HOH 279 A HOH 280 2 HOH HOH 280 A HOH 281 2 HOH HOH 281 A HOH 282 2 HOH HOH 282 A HOH 283 2 HOH HOH 283 A HOH 284 2 HOH HOH 284 A HOH 285 2 HOH HOH 285 A HOH 286 2 HOH HOH 286 A HOH 287 2 HOH HOH 287 A HOH 288 2 HOH HOH 288 A HOH 289 2 HOH HOH 289 A HOH 290 2 HOH HOH 290 A HOH 291 2 HOH HOH 291 A HOH 292 2 HOH HOH 292 A HOH 293 2 HOH HOH 293 A HOH 294 2 HOH HOH 294 A HOH 295 2 HOH HOH 295 A HOH 296 2 HOH HOH 296 A HOH 297 2 HOH HOH 297 A HOH 298 2 HOH HOH 298 A HOH 299 2 HOH HOH 299 A HOH 300 2 HOH HOH 300 A HOH 301 2 HOH HOH 301 A HOH 302 2 HOH HOH 302 A HOH 303 2 HOH HOH 303 A HOH 304 2 HOH HOH 304 A HOH 305 2 HOH HOH 305 A HOH 306 2 HOH HOH 306 A HOH 307 2 HOH HOH 307 A HOH 308 2 HOH HOH 308 A HOH 309 2 HOH HOH 309 A HOH 310 2 HOH HOH 310 A HOH 311 2 HOH HOH 311 A HOH 312 2 HOH HOH 312 A HOH 313 2 HOH HOH 313 A HOH 314 2 HOH HOH 314 A HOH 315 2 HOH HOH 315 A HOH 316 2 HOH HOH 316 A HOH 317 2 HOH HOH 317 A HOH 318 2 HOH HOH 318 A HOH 319 2 HOH HOH 319 A HOH 320 2 HOH HOH 320 A HOH 321 2 HOH HOH 321 A HOH 322 2 HOH HOH 322 A HOH 323 2 HOH HOH 323 A HOH 324 2 HOH HOH 324 A MET 1 n 1 MET 1 A LEU 2 n 2 LEU 2 A ASP 3 n 3 ASP 3 A ILE 4 n 4 ILE 4 A VAL 5 n 5 VAL 5 A LEU 6 n 6 LEU 6 A TYR 7 n 7 TYR 7 A GLU 8 n 8 GLU 8 A PRO 9 n 9 PRO 9 A GLU 10 n 10 GLU 10 A ILE 11 n 11 ILE 11 A PRO 12 n 12 PRO 12 A GLN 13 n 13 GLN 13 A ASN 14 n 14 ASN 14 A THR 15 n 15 THR 15 A GLY 16 n 16 GLY 16 A ASN 17 n 17 ASN 17 A ILE 18 n 18 ILE 18 A ILE 19 n 19 ILE 19 A ARG 20 n 20 ARG 20 A LEU 21 n 21 LEU 21 A CYS 22 n 22 CYS 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A THR 25 n 25 THR 25 A GLY 26 n 26 GLY 26 A PHE 27 n 27 PHE 27 A ARG 28 n 28 ARG 28 A LEU 29 n 29 LEU 29 A HIS 30 n 30 HIS 30 A LEU 31 n 31 LEU 31 A ILE 32 n 32 ILE 32 A GLU 33 n 33 GLU 33 A PRO 34 n 34 PRO 34 A LEU 35 n 35 LEU 35 A GLY 36 n 36 GLY 36 A PHE 37 n 37 PHE 37 A THR 38 n 38 THR 38 A TRP 39 n 39 TRP 39 A ASP 40 n 40 ASP 40 A ASP 41 n 41 ASP 41 A LYS 42 n 42 LYS 42 A ARG 43 n 43 ARG 43 A LEU 44 n 44 LEU 44 A ARG 45 n 45 ARG 45 A ARG 46 n 46 ARG 46 A SER 47 n 47 SER 47 A GLY 48 n 48 GLY 48 A LEU 49 n 49 LEU 49 A ASP 50 n 50 ASP 50 A TYR 51 n 51 TYR 51 A HIS 52 n 52 HIS 52 A GLU 53 n 53 GLU 53 A PHE 54 n 54 PHE 54 A ALA 55 n 55 ALA 55 A GLU 56 n 56 GLU 56 A ILE 57 n 57 ILE 57 A LYS 58 n 58 LYS 58 A ARG 59 n 59 ARG 59 A HIS 60 n 60 HIS 60 A LYS 61 n 61 LYS 61 A THR 62 n 62 THR 62 A PHE 63 n 63 PHE 63 A GLU 64 n 64 GLU 64 A ALA 65 n 65 ALA 65 A PHE 66 n 66 PHE 66 A LEU 67 n 67 LEU 67 A GLU 68 n 68 GLU 68 A SER 69 n 69 SER 69 A GLU 70 n 70 GLU 70 A LYS 71 n 71 LYS 71 A PRO 72 n 72 PRO 72 A LYS 73 n 73 LYS 73 A ARG 74 n 74 ARG 74 A LEU 75 n 75 LEU 75 A PHE 76 n 76 PHE 76 A ALA 77 n 77 ALA 77 A LEU 78 n 78 LEU 78 A THR 79 n 79 THR 79 A THR 80 n 80 THR 80 A LYS 81 n 81 LYS 81 A GLY 82 n 82 GLY 82 A CYS 83 n 83 CYS 83 A PRO 84 n 84 PRO 84 A ALA 85 n 85 ALA 85 A HIS 86 n 86 HIS 86 A SER 87 n 87 SER 87 A GLN 88 n 88 GLN 88 A VAL 89 n 89 VAL 89 A LYS 90 n 90 LYS 90 A PHE 91 n 91 PHE 91 A LYS 92 n 92 LYS 92 A LEU 93 n 93 LEU 93 A GLY 94 n 94 GLY 94 A ASP 95 n 95 ASP 95 A TYR 96 n 96 TYR 96 A LEU 97 n 97 LEU 97 A MET 98 n 98 MET 98 A PHE 99 n 99 PHE 99 A GLY 100 n 100 GLY 100 A PRO 101 n 101 PRO 101 A GLU 102 n 102 GLU 102 A THR 103 n 103 THR 103 A ARG 104 n 104 ARG 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A PRO 107 n 107 PRO 107 A MET 108 n 108 MET 108 A SER 109 n 109 SER 109 A ILE 110 n 110 ILE 110 A LEU 111 n 111 LEU 111 A ASN 112 n 112 ASN 112 A GLU 113 n 113 GLU 113 A MET 114 n 114 MET 114 A PRO 115 n 115 PRO 115 A MET 116 n 116 MET 116 A GLU 117 n 117 GLU 117 A GLN 118 n 118 GLN 118 A LYS 119 n 119 LYS 119 A ILE 120 n 120 ILE 120 A ARG 121 n 121 ARG 121 A ILE 122 n 122 ILE 122 A PRO 123 n 123 PRO 123 A MET 124 n 124 MET 124 A THR 125 n 125 THR 125 A ALA 126 n 126 ALA 126 A ASN 127 n 127 ASN 127 A SER 128 n 128 SER 128 A ARG 129 n 129 ARG 129 A SER 130 n 130 SER 130 A MET 131 n 131 MET 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A SER 134 n 134 SER 134 A ASN 135 n 135 ASN 135 A SER 136 n 136 SER 136 A VAL 137 n 137 VAL 137 A ALA 138 n 138 ALA 138 A VAL 139 n 139 VAL 139 A THR 140 n 140 THR 140 A VAL 141 n 141 VAL 141 A TYR 142 n 142 TYR 142 A GLU 143 n 143 GLU 143 A ALA 144 n 144 ALA 144 A TRP 145 n 145 TRP 145 A ARG 146 n 146 ARG 146 A GLN 147 n 147 GLN 147 A LEU 148 n 148 LEU 148 A GLY 149 n 149 GLY 149 A TYR 150 n 150 TYR 150 A LYS 151 n 151 LYS 151 A GLY 152 n 152 GLY 152 A ALA 153 n 153 ALA 153 A VAL 154 n 154 VAL 154 A ASN 155 n 155 ASN 155 A LEU 156 n 156 LEU 156 A n 157 157 A n 158 158 A n 159 159 A n 160 160 A author_and_software_defined_assembly PISA,PQS 2 dimeric 3190 -10 14380 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 58 A N LYS 58 A O LEU 29 A O LEU 29 A N HIS 30 A N HIS 30 A O ILE 4 A O ILE 4 A N ASP 3 A N ASP 3 A O ASP 95 A O ASP 95 A N TYR 96 A N TYR 96 A O ARG 74 A O ARG 74 A O ALA 77 A O ALA 77 A N ILE 120 A N ILE 120 1 A PRO 157 A PRO 157 1 Y 1 A GLU 158 A GLU 158 1 Y 1 A VAL 159 A VAL 159 1 Y 1 A LYS 160 A LYS 160 1 Y 1 -16.79 2.70 111.00 94.21 A A A N CA C GLU GLU GLU 56 56 56 N 1 A GLU 8 37.08 55.70 1 A PHE 54 -91.52 -159.88 1 A ALA 55 34.87 46.88 1 A GLU 56 -143.24 -2.84 1 A LYS 71 33.73 67.87 30 0.263 0.195 2.0 20.0 1036 9558 9326 11.1 random 1 THROUGHOUT 2 MIR Engh & Huber 2.0 20.0 124 1384 0 0 1260 0.018 1.9 0.323 0.234 2.07 94.6 21 2 50 1J85 9754 9754 0 0 0.058 1 14.0 10.9 98.1 0.134 2.0 2.09 1190 0.134 1 8.7 99.8 data reduction DENZO data scaling SCALEPACK phasing SOLVE phasing MLPHARE model building DM refinement CNS phasing DM Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU) 1 N N 2 N N A ILE 11 A ILE 11 HELX_P A GLY 26 A GLY 26 1 1 16 A ASP 41 A ASP 41 HELX_P A ARG 46 A ARG 46 1 2 6 A ASP 50 A ASP 50 HELX_P A PHE 54 A PHE 54 5 3 5 A THR 62 A THR 62 HELX_P A LYS 71 A LYS 71 1 4 10 A PRO 107 A PRO 107 HELX_P A ASN 112 A ASN 112 1 5 6 A GLU 113 A GLU 113 HELX_P A MET 114 A MET 114 5 6 2 A PRO 115 A PRO 115 HELX_P A GLU 117 A GLU 117 5 7 3 A ASN 132 A ASN 132 HELX_P A LEU 148 A LEU 148 1 8 17 TRANSFERASE methyltransferase, structural genomics, hypothetical protein, Structure 2 Function Project, S2F, TRANSFERASE A GLU 33 A GLU 33 1 A PRO 34 A PRO 34 -0.45 Y766_HAEIN UNP 1 1 P44868 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFALTT KGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPEVK 1 160 1J85 1 160 P44868 A 1 1 160 6 parallel parallel parallel parallel parallel A LYS 58 A LYS 58 A HIS 60 A HIS 60 A ARG 28 A ARG 28 A ILE 32 A ILE 32 A ASP 3 A ASP 3 A TYR 7 A TYR 7 A ASP 95 A ASP 95 A PHE 99 A PHE 99 A ARG 74 A ARG 74 A LEU 78 A LEU 78 A LYS 119 A LYS 119 A ILE 120 A ILE 120 92 P 41 21 2