0.017042
0.009839
0.000000
0.000000
0.019678
0.000000
0.000000
0.000000
0.004365
0.00000
0.00000
0.00000
Garman, S.C.
Sechi, S.
Kinet, J.P.
Jardetzky, T.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
58.680
58.680
229.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose
L-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
R
C
N
113
S
C
N
114
R
C
N
115
S
C
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
N
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
N
Y
191
N
C
Y
192
N
C
Y
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
S
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
N
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
S
C
N
275
S
C
N
276
S
C
N
277
S
C
N
278
R
C
N
279
N
C
N
280
N
O
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
O
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
S
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
R
C
N
319
R
C
N
320
R
C
N
321
S
C
N
322
R
C
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
N
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
O
N
331
N
O
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
R
C
N
407
N
O
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
N
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
N
475
N
C
N
476
N
C
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
Y
187
N
sing
Y
188
N
doub
Y
189
N
doub
N
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
Y
444
N
doub
Y
445
N
sing
Y
446
N
sing
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
1049
1062
10.1006/jmbi.2001.4929
11531339
The analysis of the human high affinity IgE receptor Fc epsilon Ri alpha from multiple crystal forms.
2001
10.2210/pdb1j87/pdb
pdb_00001j87
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
1997-11-15
MARRESEARCH
Si
SINGLE WAVELENGTH
M
x-ray
1
1.004
1.0
5ID-B
APS
1.004
SYNCHROTRON
APS BEAMLINE 5ID-B
GLYCOSYLATED PROTEIN
19940.119
HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-SUBUNIT
EXTRACELLULAR FRAGMENT
I170C
1
man
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
910.823
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
570.542
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
FC(EPSILON)RI(ALPHA); IGE FC RECEPTOR, ALPHA-SUBUNIT; FC-EPSILON RI-ALPHA
no
no
VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVY
LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDY
ESEPLNITVCKA
VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVY
LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDY
ESEPLNITVCKA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
9606
Homo sapiens
7108
Spodoptera frugiperda
SF9
BACULOVIRUS
PVL1392
1
2.85
55
VAPOR DIFFUSION, HANGING DROP
5.6
PEG 4000, Sodium Citrate, Sodium Chloride, HECAMEG, pH 5.6, VAPOR DIFFUSION, HANGING DROP at 293K
293
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Atomic model
Data collection
Derived calculations
Structure summary
Database references
Structure summary
Data collection
Refinement description
1
0
2001-08-29
1
1
2008-04-27
1
2
2011-07-13
2
0
2020-07-29
2
1
2021-10-27
2
2
2023-08-16
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
B
NAG
221
n
B
NAG
1
B
NAG
222
n
B
NAG
2
C
NAG
242
n
C
NAG
1
C
NAG
243
n
C
NAG
2
C
MAN
244
n
C
BMA
3
C
MAN
245
n
C
MAN
4
C
MAN
246
n
C
MAN
5
D
NAG
340
n
D
NAG
1
D
NAG
341
n
D
NAG
2
D
FUC
342
n
D
FUC
3
E
NAG
366
n
E
NAG
1
E
NAG
367
n
E
NAG
2
DManpb
b-D-mannopyranose
b-D-Manp
Man
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Monoclinic Crystal Form 1
Complex with IgE-Fc C(epsilon)3-4
MONOCLINIC CRYSTAL FORM 2
TETRAGONAL CRYSTAL FORM 1
TETRAGONAL CRYSTAL FORM 2
RCSB
Y
RCSB
2001-05-20
REL
oligosaccharide
oligosaccharide
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}
3
PDB-CARE
LINUCS
DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1
4
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}}
4
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
BMA
NAG
3
2
3
O1
HO4
sing
C1
O3
MAN
BMA
4
3
3
O1
HO3
sing
C1
O6
MAN
BMA
5
3
3
O1
HO6
sing
C1
O4
NAG
NAG
2
1
4
O1
HO4
sing
C1
O6
FUC
NAG
3
1
4
O1
HO6
sing
n
n
n
n
n
n
n
n
n
n
1F2Q
PDB
experimental model
VAL
1
n
1
VAL
1
A
PRO
2
n
2
PRO
2
A
GLN
3
n
3
GLN
3
A
LYS
4
n
4
LYS
4
A
PRO
5
n
5
PRO
5
A
LYS
6
n
6
LYS
6
A
VAL
7
n
7
VAL
7
A
SER
8
n
8
SER
8
A
LEU
9
n
9
LEU
9
A
ASN
10
n
10
ASN
10
A
PRO
11
n
11
PRO
11
A
PRO
12
n
12
PRO
12
A
TRP
13
n
13
TRP
13
A
ASN
14
n
14
ASN
14
A
ARG
15
n
15
ARG
15
A
ILE
16
n
16
ILE
16
A
PHE
17
n
17
PHE
17
A
LYS
18
n
18
LYS
18
A
GLY
19
n
19
GLY
19
A
GLU
20
n
20
GLU
20
A
ASN
21
n
21
ASN
21
A
VAL
22
n
22
VAL
22
A
THR
23
n
23
THR
23
A
LEU
24
n
24
LEU
24
A
THR
25
n
25
THR
25
A
CYS
26
n
26
CYS
26
A
ASN
27
n
27
ASN
27
A
GLY
28
n
28
GLY
28
A
ASN
29
n
29
ASN
29
A
ASN
30
n
30
ASN
30
A
PHE
31
n
31
PHE
31
A
PHE
32
n
32
PHE
32
A
n
33
33
A
n
34
34
A
n
35
35
A
SER
36
n
36
SER
36
A
THR
37
n
37
THR
37
A
LYS
38
n
38
LYS
38
A
TRP
39
n
39
TRP
39
A
PHE
40
n
40
PHE
40
A
HIS
41
n
41
HIS
41
A
ASN
42
n
42
ASN
42
A
GLY
43
n
43
GLY
43
A
SER
44
n
44
SER
44
A
LEU
45
n
45
LEU
45
A
SER
46
n
46
SER
46
A
GLU
47
n
47
GLU
47
A
GLU
48
n
48
GLU
48
A
THR
49
n
49
THR
49
A
ASN
50
n
50
ASN
50
A
SER
51
n
51
SER
51
A
SER
52
n
52
SER
52
A
LEU
53
n
53
LEU
53
A
ASN
54
n
54
ASN
54
A
ILE
55
n
55
ILE
55
A
VAL
56
n
56
VAL
56
A
ASN
57
n
57
ASN
57
A
ALA
58
n
58
ALA
58
A
LYS
59
n
59
LYS
59
A
PHE
60
n
60
PHE
60
A
GLU
61
n
61
GLU
61
A
ASP
62
n
62
ASP
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
GLU
65
n
65
GLU
65
A
TYR
66
n
66
TYR
66
A
LYS
67
n
67
LYS
67
A
CYS
68
n
68
CYS
68
A
GLN
69
n
69
GLN
69
A
HIS
70
n
70
HIS
70
A
GLN
71
n
71
GLN
71
A
GLN
72
n
72
GLN
72
A
VAL
73
n
73
VAL
73
A
ASN
74
n
74
ASN
74
A
GLU
75
n
75
GLU
75
A
SER
76
n
76
SER
76
A
GLU
77
n
77
GLU
77
A
PRO
78
n
78
PRO
78
A
VAL
79
n
79
VAL
79
A
TYR
80
n
80
TYR
80
A
LEU
81
n
81
LEU
81
A
GLU
82
n
82
GLU
82
A
VAL
83
n
83
VAL
83
A
PHE
84
n
84
PHE
84
A
SER
85
n
85
SER
85
A
ASP
86
n
86
ASP
86
A
TRP
87
n
87
TRP
87
A
LEU
88
n
88
LEU
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
GLN
91
n
91
GLN
91
A
ALA
92
n
92
ALA
92
A
SER
93
n
93
SER
93
A
ALA
94
n
94
ALA
94
A
GLU
95
n
95
GLU
95
A
VAL
96
n
96
VAL
96
A
VAL
97
n
97
VAL
97
A
MET
98
n
98
MET
98
A
GLU
99
n
99
GLU
99
A
GLY
100
n
100
GLY
100
A
GLN
101
n
101
GLN
101
A
PRO
102
n
102
PRO
102
A
LEU
103
n
103
LEU
103
A
PHE
104
n
104
PHE
104
A
LEU
105
n
105
LEU
105
A
ARG
106
n
106
ARG
106
A
CYS
107
n
107
CYS
107
A
HIS
108
n
108
HIS
108
A
GLY
109
n
109
GLY
109
A
TRP
110
n
110
TRP
110
A
ARG
111
n
111
ARG
111
A
ASN
112
n
112
ASN
112
A
TRP
113
n
113
TRP
113
A
ASP
114
n
114
ASP
114
A
VAL
115
n
115
VAL
115
A
TYR
116
n
116
TYR
116
A
LYS
117
n
117
LYS
117
A
VAL
118
n
118
VAL
118
A
ILE
119
n
119
ILE
119
A
TYR
120
n
120
TYR
120
A
TYR
121
n
121
TYR
121
A
LYS
122
n
122
LYS
122
A
ASP
123
n
123
ASP
123
A
GLY
124
n
124
GLY
124
A
GLU
125
n
125
GLU
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
LYS
128
n
128
LYS
128
A
TYR
129
n
129
TYR
129
A
TRP
130
n
130
TRP
130
A
TYR
131
n
131
TYR
131
A
GLU
132
n
132
GLU
132
A
ASN
133
n
133
ASN
133
A
HIS
134
n
134
HIS
134
A
ASN
135
n
135
ASN
135
A
ILE
136
n
136
ILE
136
A
SER
137
n
137
SER
137
A
ILE
138
n
138
ILE
138
A
THR
139
n
139
THR
139
A
ASN
140
n
140
ASN
140
A
ALA
141
n
141
ALA
141
A
THR
142
n
142
THR
142
A
VAL
143
n
143
VAL
143
A
GLU
144
n
144
GLU
144
A
ASP
145
n
145
ASP
145
A
SER
146
n
146
SER
146
A
GLY
147
n
147
GLY
147
A
THR
148
n
148
THR
148
A
TYR
149
n
149
TYR
149
A
TYR
150
n
150
TYR
150
A
CYS
151
n
151
CYS
151
A
THR
152
n
152
THR
152
A
GLY
153
n
153
GLY
153
A
LYS
154
n
154
LYS
154
A
VAL
155
n
155
VAL
155
A
TRP
156
n
156
TRP
156
A
GLN
157
n
157
GLN
157
A
LEU
158
n
158
LEU
158
A
ASP
159
n
159
ASP
159
A
TYR
160
n
160
TYR
160
A
GLU
161
n
161
GLU
161
A
SER
162
n
162
SER
162
A
GLU
163
n
163
GLU
163
A
PRO
164
n
164
PRO
164
A
LEU
165
n
165
LEU
165
A
ASN
166
n
166
ASN
166
A
ILE
167
n
167
ILE
167
A
THR
168
n
168
THR
168
A
VAL
169
n
169
VAL
169
A
CYS
170
n
170
CYS
170
A
LYS
171
n
171
LYS
171
A
n
172
172
A
author_defined_assembly
1
monomeric
A
ASN
21
GLYCOSYLATION SITE
A
ASN
21
ASN
A
ASN
166
GLYCOSYLATION SITE
A
ASN
166
ASN
A
ASN
140
GLYCOSYLATION SITE
A
ASN
140
ASN
A
ASN
42
GLYCOSYLATION SITE
A
ASN
42
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
10
A
O
ASN
10
A
N
THR
23
A
N
THR
23
A
N
LEU
24
A
N
LEU
24
A
O
LEU
53
A
O
LEU
53
A
N
ILE
16
A
N
ILE
16
A
O
GLU
82
A
O
GLU
82
A
N
LEU
81
A
N
LEU
81
A
O
GLY
64
A
O
GLY
64
A
N
GLN
69
A
N
GLN
69
A
O
LYS
38
A
O
LYS
38
A
N
HIS
41
A
N
HIS
41
A
O
SER
44
A
O
SER
44
A
N
GLN
91
A
N
GLN
91
A
O
ARG
106
A
O
ARG
106
A
N
LEU
105
A
N
LEU
105
A
O
SER
137
A
O
SER
137
A
O
ILE
138
A
O
ILE
138
A
N
TYR
131
A
N
TYR
131
A
O
GLU
125
A
O
GLU
125
A
N
LYS
122
A
N
LYS
122
A
N
TYR
121
A
N
TYR
121
A
O
TYR
150
A
O
TYR
150
A
N
VAL
155
A
N
VAL
155
A
O
LEU
158
A
O
LEU
158
A
O
GLU
125
A
O
GLU
125
A
N
LYS
122
A
N
LYS
122
A
N
TYR
121
A
N
TYR
121
A
O
TYR
150
A
O
TYR
150
A
N
TYR
149
A
N
TYR
149
A
O
LEU
165
A
O
LEU
165
A
O
THR
168
A
O
THR
168
A
N
VAL
97
A
N
VAL
97
1
A
GLU
33
A
GLU
33
1
Y
1
A
VAL
34
A
VAL
34
1
Y
1
A
SER
35
A
SER
35
1
Y
1
A
ALA
172
A
ALA
172
1
Y
1
A
PHE
32
0.077
SIDE CHAIN
1
A
GLN
3
-52.57
174.48
1
A
ASN
27
-45.69
172.55
1
A
ASN
57
42.74
78.55
1
A
PHE
60
-35.42
-34.11
1
A
GLN
72
48.04
25.43
1
A
GLU
75
-47.89
162.07
1
A
GLU
99
-27.57
142.87
1
A
LYS
117
39.58
38.09
1
A
ILE
119
-160.91
119.22
1
A
HIS
134
-29.13
-28.82
1
A
TYR
150
179.31
134.47
1
A
TRP
156
59.20
-72.03
1
A
GLN
157
-156.34
-4.92
1
A
CYS
170
-59.15
107.02
PROTEIN_REP.PARAM
PROTEIN.TOP
CARBOHYDRATE.PARAM
CARBOHYDRATE.TOP
96.0
4.44
27.28
0.00
4.44
0.00
-8.87
no density appears for residues 33-35; they are not included in the model
0.306
0.015
0.264
0.264
3.20
19.23
412
4030
4030
10.2
92.9
RANDOM
1638969.31
0.00
1
GROUP
THROUGHOUT
0.0
0
MOLECULAR REPLACEMENT
1F2Q
Engh & Huber
FLAT MODEL
13.72
0.250
0.55
0.43
5.00
0.58
0.54
3.20
19.23
0
1535
155
0
1380
0.012
1.7
26.2
0.94
0.393
0.049
0.32
3.40
65
587
652
6
10.0
94.1
78.1
3.2
20
1J87
4076
4076
0
0
0.103
1
18.3
8.0
92.9
0.516
3.20
3.31
1
7.1
95.4
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
HUMAN HIGH AFFINITY FC RECEPTOR FC(EPSILON)RI(ALPHA), HEXAGONAL CRYSTAL FORM 1
1
N
N
2
N
N
3
N
N
4
N
N
2
N
N
The biological assembly is a protein monomer with attached carbohydrate
A
LYS
59
A
LYS
59
HELX_P
A
SER
63
A
SER
63
5
1
5
A
ARG
111
A
ARG
111
HELX_P
A
TRP
113
A
TRP
113
5
2
3
disulf
2.029
A
CYS
26
A
SG
CYS
26
1_555
A
CYS
68
A
SG
CYS
68
1_555
disulf
2.036
A
CYS
107
A
SG
CYS
107
1_555
A
CYS
151
A
SG
CYS
151
1_555
covale
1.443
one
N-Glycosylation
A
ASN
21
A
ND2
ASN
21
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.456
one
N-Glycosylation
A
ASN
42
A
ND2
ASN
42
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.456
one
N-Glycosylation
A
ASN
140
A
ND2
ASN
140
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.451
one
N-Glycosylation
A
ASN
166
A
ND2
ASN
166
1_555
E
NAG
1
E
C1
NAG
1_555
covale
1.378
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.383
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.379
both
C
NAG
2
C
O4
NAG
1_555
C
BMA
3
C
C1
BMA
1_555
covale
1.410
both
C
BMA
3
C
O3
BMA
1_555
C
MAN
4
C
C1
MAN
1_555
covale
1.419
both
C
BMA
3
C
O6
BMA
1_555
C
MAN
5
C
C1
MAN
1_555
covale
1.387
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
covale
1.404
both
D
NAG
1
D
O6
NAG
1_555
D
FUC
3
D
C1
FUC
1_555
covale
1.385
both
E
NAG
1
E
O4
NAG
1_555
E
NAG
2
E
C1
NAG
1_555
IMMUNE SYSTEM
Immune System, Fc Receptor, IgE receptor, Glycoprotein
A
ASN
10
A
ASN
10
1
A
PRO
11
A
PRO
11
-1.66
FCEA_HUMAN
UNP
1
26
P12319
VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVY
LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDY
ESEPLNITVIKA
26
197
1J87
1
172
P12319
A
1
1
172
1
ILE
engineered mutation
CYS
170
1J87
A
P12319
UNP
195
170
3
5
4
4
5
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
7
A
VAL
7
A
ASN
10
A
ASN
10
A
VAL
22
A
VAL
22
A
CYS
26
A
CYS
26
A
SER
52
A
SER
52
A
ILE
55
A
ILE
55
A
ARG
15
A
ARG
15
A
PHE
17
A
PHE
17
A
VAL
79
A
VAL
79
A
PHE
84
A
PHE
84
A
GLY
64
A
GLY
64
A
HIS
70
A
HIS
70
A
THR
37
A
THR
37
A
HIS
41
A
HIS
41
A
SER
44
A
SER
44
A
LEU
45
A
LEU
45
A
LEU
88
A
LEU
88
A
ALA
92
A
ALA
92
A
PRO
102
A
PRO
102
A
GLY
109
A
GLY
109
A
ILE
136
A
ILE
136
A
ASN
140
A
ASN
140
A
TYR
131
A
TYR
131
A
ASN
133
A
ASN
133
A
GLU
125
A
GLU
125
A
ALA
126
A
ALA
126
A
TYR
116
A
TYR
116
A
LYS
122
A
LYS
122
A
GLY
147
A
GLY
147
A
VAL
155
A
VAL
155
A
LEU
158
A
LEU
158
A
GLU
161
A
GLU
161
A
GLU
125
A
GLU
125
A
ALA
126
A
ALA
126
A
TYR
116
A
TYR
116
A
LYS
122
A
LYS
122
A
GLY
147
A
GLY
147
A
VAL
155
A
VAL
155
A
LEU
165
A
LEU
165
A
CYS
170
A
CYS
170
A
VAL
96
A
VAL
96
A
MET
98
A
MET
98
178
hexagonal
P 61 2 2