0.022528 0.000000 0.000000 0.000000 0.007531 0.000000 0.000000 0.000000 0.027609 0.00000 0.00000 0.00000 Lim, K. Tempcyzk, A. Toedt, J. Parsons, J.F. Howard, A. Eisenstein, E. Herzberg, O. Structure 2 Function Project (S2F) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.0 90.0 90.0 44.39 132.79 36.22 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 50 375 379 10.1002/prot.10297 12486730 Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-01-01 MARRESEARCH MAD M x-ray 1 0.9789 1.0 0.9790 1.0 0.9500 1.0 17-ID APS 0.9789, 0.9790, 0.9500 SYNCHROTRON APS BEAMLINE 17-ID 12734.129 YbaB 1 man polymer 18.015 water 161 nat water HYPOTHETICAL PROTEIN HI0442 no yes GSH(MSE)FGKGGLGGL(MSE)KQAQQ(MSE)QEK(MSE)QK(MSE)QEEIAQLEVTGESGAGLVKITINGAHNCRRIDI DPSL(MSE)EDDKE(MSE)LEDLIAAAFNDAVRRAEELQKEK(MSE)ASVTAG(MSE)PLPPG(MSE)KFPF GSHMFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAF NDAVRRAEELQKEKMASVTAGMPLPPGMKFPF A HI0442 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Haemophilus Haemophilus influenzae KW20 Escherichia sample HI0442 71421 Haemophilus influenzae Rd 562 Escherichia coli B834 (DE3) pET15b pET15b-HI0442 1 2.09 41.29 VAPOR DIFFUSION, HANGING DROP 3.8 1 M ammonium phosphate, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 Structure 2 Function Project S2F repository Initial release Version format compliance Source and taxonomy Version format compliance Database references 1 0 2003-01-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-09-26 Y RCSB Y RCSB 2001-05-21 REL REL HOH water HOH 201 2 HOH HOH 201 A HOH 202 2 HOH HOH 202 A HOH 203 2 HOH HOH 203 A HOH 204 2 HOH HOH 204 A HOH 205 2 HOH HOH 205 A HOH 206 2 HOH HOH 206 A HOH 207 2 HOH HOH 207 A HOH 208 2 HOH HOH 208 A HOH 209 2 HOH HOH 209 A HOH 210 2 HOH HOH 210 A HOH 211 2 HOH HOH 211 A HOH 212 2 HOH HOH 212 A HOH 213 2 HOH HOH 213 A HOH 214 2 HOH HOH 214 A HOH 215 2 HOH HOH 215 A HOH 216 2 HOH HOH 216 A HOH 217 2 HOH HOH 217 A HOH 218 2 HOH HOH 218 A HOH 219 2 HOH HOH 219 A HOH 220 2 HOH HOH 220 A HOH 221 2 HOH HOH 221 A HOH 222 2 HOH HOH 222 A HOH 223 2 HOH HOH 223 A HOH 224 2 HOH HOH 224 A HOH 225 2 HOH HOH 225 A HOH 226 2 HOH HOH 226 A HOH 227 2 HOH HOH 227 A HOH 228 2 HOH HOH 228 A HOH 229 2 HOH HOH 229 A HOH 230 2 HOH HOH 230 A HOH 231 2 HOH HOH 231 A HOH 232 2 HOH HOH 232 A HOH 233 2 HOH HOH 233 A HOH 234 2 HOH HOH 234 A HOH 235 2 HOH HOH 235 A HOH 236 2 HOH HOH 236 A HOH 237 2 HOH HOH 237 A HOH 238 2 HOH HOH 238 A HOH 239 2 HOH HOH 239 A HOH 240 2 HOH HOH 240 A HOH 241 2 HOH HOH 241 A HOH 242 2 HOH HOH 242 A HOH 243 2 HOH HOH 243 A HOH 244 2 HOH HOH 244 A HOH 245 2 HOH HOH 245 A HOH 246 2 HOH HOH 246 A HOH 247 2 HOH HOH 247 A HOH 248 2 HOH HOH 248 A HOH 249 2 HOH HOH 249 A HOH 250 2 HOH HOH 250 A HOH 251 2 HOH HOH 251 A HOH 252 2 HOH HOH 252 A HOH 253 2 HOH HOH 253 A HOH 254 2 HOH HOH 254 A HOH 255 2 HOH HOH 255 A HOH 256 2 HOH HOH 256 A HOH 257 2 HOH HOH 257 A HOH 258 2 HOH HOH 258 A HOH 259 2 HOH HOH 259 A HOH 260 2 HOH HOH 260 A HOH 261 2 HOH HOH 261 A HOH 262 2 HOH HOH 262 A HOH 263 2 HOH HOH 263 A HOH 264 2 HOH HOH 264 A HOH 265 2 HOH HOH 265 A HOH 266 2 HOH HOH 266 A HOH 267 2 HOH HOH 267 A HOH 268 2 HOH HOH 268 A HOH 269 2 HOH HOH 269 A HOH 270 2 HOH HOH 270 A HOH 271 2 HOH HOH 271 A HOH 272 2 HOH HOH 272 A HOH 273 2 HOH HOH 273 A HOH 274 2 HOH HOH 274 A HOH 275 2 HOH HOH 275 A HOH 276 2 HOH HOH 276 A HOH 277 2 HOH HOH 277 A HOH 278 2 HOH HOH 278 A HOH 279 2 HOH HOH 279 A HOH 280 2 HOH HOH 280 A HOH 281 2 HOH HOH 281 A HOH 282 2 HOH HOH 282 A HOH 283 2 HOH HOH 283 A HOH 284 2 HOH HOH 284 A HOH 285 2 HOH HOH 285 A HOH 286 2 HOH HOH 286 A HOH 287 2 HOH HOH 287 A HOH 288 2 HOH HOH 288 A HOH 289 2 HOH HOH 289 A HOH 290 2 HOH HOH 290 A HOH 291 2 HOH HOH 291 A HOH 292 2 HOH HOH 292 A HOH 293 2 HOH HOH 293 A HOH 294 2 HOH HOH 294 A HOH 295 2 HOH HOH 295 A HOH 296 2 HOH HOH 296 A HOH 297 2 HOH HOH 297 A HOH 298 2 HOH HOH 298 A HOH 299 2 HOH HOH 299 A HOH 300 2 HOH HOH 300 A HOH 301 2 HOH HOH 301 A HOH 302 2 HOH HOH 302 A HOH 303 2 HOH HOH 303 A HOH 304 2 HOH HOH 304 A HOH 305 2 HOH HOH 305 A HOH 306 2 HOH HOH 306 A HOH 307 2 HOH HOH 307 A HOH 308 2 HOH HOH 308 A HOH 309 2 HOH HOH 309 A HOH 310 2 HOH HOH 310 A HOH 311 2 HOH HOH 311 A HOH 312 2 HOH HOH 312 A HOH 313 2 HOH HOH 313 A HOH 314 2 HOH HOH 314 A HOH 315 2 HOH HOH 315 A HOH 316 2 HOH HOH 316 A HOH 317 2 HOH HOH 317 A HOH 318 2 HOH HOH 318 A HOH 319 2 HOH HOH 319 A HOH 320 2 HOH HOH 320 A HOH 321 2 HOH HOH 321 A HOH 322 2 HOH HOH 322 A HOH 323 2 HOH HOH 323 A HOH 324 2 HOH HOH 324 A HOH 325 2 HOH HOH 325 A HOH 326 2 HOH HOH 326 A HOH 327 2 HOH HOH 327 A HOH 328 2 HOH HOH 328 A HOH 329 2 HOH HOH 329 A HOH 330 2 HOH HOH 330 A HOH 331 2 HOH HOH 331 A HOH 332 2 HOH HOH 332 A HOH 333 2 HOH HOH 333 A HOH 334 2 HOH HOH 334 A HOH 335 2 HOH HOH 335 A HOH 336 2 HOH HOH 336 A HOH 337 2 HOH HOH 337 A HOH 338 2 HOH HOH 338 A HOH 339 2 HOH HOH 339 A HOH 340 2 HOH HOH 340 A HOH 341 2 HOH HOH 341 A HOH 342 2 HOH HOH 342 A HOH 343 2 HOH HOH 343 A HOH 344 2 HOH HOH 344 A HOH 345 2 HOH HOH 345 A HOH 346 2 HOH HOH 346 A HOH 347 2 HOH HOH 347 A HOH 348 2 HOH HOH 348 A HOH 349 2 HOH HOH 349 A HOH 350 2 HOH HOH 350 A HOH 351 2 HOH HOH 351 A HOH 352 2 HOH HOH 352 A HOH 353 2 HOH HOH 353 A HOH 354 2 HOH HOH 354 A HOH 355 2 HOH HOH 355 A HOH 356 2 HOH HOH 356 A HOH 357 2 HOH HOH 357 A HOH 358 2 HOH HOH 358 A HOH 359 2 HOH HOH 359 A HOH 360 2 HOH HOH 360 A HOH 361 2 HOH HOH 361 A n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A n 7 4 A n 8 5 A n 9 6 A LEU 7 n 10 LEU 7 A GLY 8 n 11 GLY 8 A GLY 9 n 12 GLY 9 A LEU 10 n 13 LEU 10 A MSE 11 n 14 MSE 11 A LYS 12 n 15 LYS 12 A GLN 13 n 16 GLN 13 A ALA 14 n 17 ALA 14 A GLN 15 n 18 GLN 15 A GLN 16 n 19 GLN 16 A MSE 17 n 20 MSE 17 A GLN 18 n 21 GLN 18 A GLU 19 n 22 GLU 19 A LYS 20 n 23 LYS 20 A MSE 21 n 24 MSE 21 A GLN 22 n 25 GLN 22 A LYS 23 n 26 LYS 23 A MSE 24 n 27 MSE 24 A GLN 25 n 28 GLN 25 A GLU 26 n 29 GLU 26 A GLU 27 n 30 GLU 27 A ILE 28 n 31 ILE 28 A ALA 29 n 32 ALA 29 A GLN 30 n 33 GLN 30 A LEU 31 n 34 LEU 31 A GLU 32 n 35 GLU 32 A VAL 33 n 36 VAL 33 A THR 34 n 37 THR 34 A GLY 35 n 38 GLY 35 A GLU 36 n 39 GLU 36 A SER 37 n 40 SER 37 A GLY 38 n 41 GLY 38 A ALA 39 n 42 ALA 39 A GLY 40 n 43 GLY 40 A LEU 41 n 44 LEU 41 A VAL 42 n 45 VAL 42 A LYS 43 n 46 LYS 43 A ILE 44 n 47 ILE 44 A THR 45 n 48 THR 45 A ILE 46 n 49 ILE 46 A ASN 47 n 50 ASN 47 A GLY 48 n 51 GLY 48 A ALA 49 n 52 ALA 49 A HIS 50 n 53 HIS 50 A ASN 51 n 54 ASN 51 A CYS 52 n 55 CYS 52 A ARG 53 n 56 ARG 53 A ARG 54 n 57 ARG 54 A ILE 55 n 58 ILE 55 A ASP 56 n 59 ASP 56 A ILE 57 n 60 ILE 57 A ASP 58 n 61 ASP 58 A PRO 59 n 62 PRO 59 A SER 60 n 63 SER 60 A LEU 61 n 64 LEU 61 A MSE 62 n 65 MSE 62 A GLU 63 n 66 GLU 63 A ASP 64 n 67 ASP 64 A ASP 65 n 68 ASP 65 A LYS 66 n 69 LYS 66 A GLU 67 n 70 GLU 67 A MSE 68 n 71 MSE 68 A LEU 69 n 72 LEU 69 A GLU 70 n 73 GLU 70 A ASP 71 n 74 ASP 71 A LEU 72 n 75 LEU 72 A ILE 73 n 76 ILE 73 A ALA 74 n 77 ALA 74 A ALA 75 n 78 ALA 75 A ALA 76 n 79 ALA 76 A PHE 77 n 80 PHE 77 A ASN 78 n 81 ASN 78 A ASP 79 n 82 ASP 79 A ALA 80 n 83 ALA 80 A VAL 81 n 84 VAL 81 A ARG 82 n 85 ARG 82 A ARG 83 n 86 ARG 83 A ALA 84 n 87 ALA 84 A GLU 85 n 88 GLU 85 A GLU 86 n 89 GLU 86 A LEU 87 n 90 LEU 87 A GLN 88 n 91 GLN 88 A LYS 89 n 92 LYS 89 A GLU 90 n 93 GLU 90 A LYS 91 n 94 LYS 91 A MSE 92 n 95 MSE 92 A ALA 93 n 96 ALA 93 A SER 94 n 97 SER 94 A VAL 95 n 98 VAL 95 A THR 96 n 99 THR 96 A ALA 97 n 100 ALA 97 A GLY 98 n 101 GLY 98 A n 102 99 A n 103 100 A n 104 101 A n 105 102 A n 106 103 A n 107 104 A n 108 105 A n 109 106 A n 110 107 A n 111 108 A n 112 109 A author_defined_assembly 2 dimeric A MSE 11 SELENOMETHIONINE A MSE 14 MET A MSE 17 SELENOMETHIONINE A MSE 20 MET A MSE 21 SELENOMETHIONINE A MSE 24 MET A MSE 24 SELENOMETHIONINE A MSE 27 MET A MSE 62 SELENOMETHIONINE A MSE 65 MET A MSE 68 SELENOMETHIONINE A MSE 71 MET A MSE 92 SELENOMETHIONINE A MSE 95 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_656 -x+1,y,-z+3/2 crystal symmetry operation 44.3900000000 0.0000000000 54.3300000000 A N SER 37 A N SER 40 A O VAL 42 A O VAL 45 A O THR 45 A O THR 48 A N ARG 53 A N ARG 56 1 A HOH 324 B HOH 1 A HOH 336 B HOH 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A HIS 0 A HIS 3 1 Y 1 A MSE 1 A MSE 4 1 Y 1 A PHE 2 A PHE 5 1 Y 1 A GLY 3 A GLY 6 1 Y 1 A LYS 4 A LYS 7 1 Y 1 A GLY 5 A GLY 8 1 Y 1 A GLY 6 A GLY 9 1 Y 1 A MSE 99 A MSE 102 1 Y 1 A PRO 100 A PRO 103 1 Y 1 A LEU 101 A LEU 104 1 Y 1 A PRO 102 A PRO 105 1 Y 1 A PRO 103 A PRO 106 1 Y 1 A GLY 104 A GLY 107 1 Y 1 A MSE 105 A MSE 108 1 Y 1 A LYS 106 A LYS 109 1 Y 1 A PHE 107 A PHE 110 1 Y 1 A PRO 108 A PRO 111 1 Y 1 A PHE 109 A PHE 112 1 Y 1 A A O O HOH HOH 227 293 1.97 1 A A O O HOH HOH 287 325 2.17 1 A A OE2 O GLU HOH 90 292 2.19 1 A A O O HOH HOH 276 279 2.19 1 A A O O HOH HOH 212 212 1.76 1_555 3_655 1 A A O O HOH HOH 302 329 2.15 1_555 8_556 1 A HIS 50 70.16 30.25 1 A ASP 64 -119.00 -163.88 1 A ALA 97 -45.10 68.72 33 0.263 0.18 1.75 99 1093 10912 10681 10.2 random 1 THROUGHOUT 2 MAD Engh & Huber 1.75 99 161 863 0 0 702 0.020 1.8 0.301 0.348 1.83 77.3 21 1.75 99 1J8B 10936 10936 0 0 0.071 1 18.0 6.5 96.7 0.214 1.75 1.81 810 1 4.2 73.5 data reduction DENZO data scaling SCALEPACK phasing SOLVE model building SHELX phasing MLPHARE model building DM refinement CNS phasing SHELX phasing DM YbaB Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function 1 N N 2 N N To obtain a dimer, apply -X,Y,1/2-Z symmetry operator and 1,0,1 translation vector A GLY 9 A GLY 12 HELX_P A ALA 29 A ALA 32 1 1 21 A PRO 59 A PRO 62 HELX_P A ASP 64 A ASP 67 5 2 6 A ASP 65 A ASP 68 HELX_P A THR 96 A THR 99 1 3 32 covale 1.335 A LEU 10 A C LEU 13 1_555 A MSE 11 A N MSE 14 1_555 covale 1.338 A MSE 11 A C MSE 14 1_555 A LYS 12 A N LYS 15 1_555 covale 1.330 A A GLN 16 A C GLN 19 1_555 A MSE 17 A N MSE 20 1_555 covale 1.329 B A GLN 16 A C GLN 19 1_555 A MSE 17 A N MSE 20 1_555 covale 1.325 A A MSE 17 A C MSE 20 1_555 A GLN 18 A N GLN 21 1_555 covale 1.326 B A MSE 17 A C MSE 20 1_555 A GLN 18 A N GLN 21 1_555 covale 1.327 A LYS 20 A C LYS 23 1_555 A MSE 21 A N MSE 24 1_555 covale 1.332 A MSE 21 A C MSE 24 1_555 A GLN 22 A N GLN 25 1_555 covale 1.341 A LYS 23 A C LYS 26 1_555 A MSE 24 A N MSE 27 1_555 covale 1.333 A MSE 24 A C MSE 27 1_555 A GLN 25 A N GLN 28 1_555 covale 1.342 A LEU 61 A C LEU 64 1_555 A MSE 62 A N MSE 65 1_555 covale 1.337 A MSE 62 A C MSE 65 1_555 A GLU 63 A N GLU 66 1_555 covale 1.336 A GLU 67 A C GLU 70 1_555 A MSE 68 A N MSE 71 1_555 covale 1.333 A MSE 68 A C MSE 71 1_555 A LEU 69 A N LEU 72 1_555 covale 1.335 A LYS 91 A C LYS 94 1_555 A MSE 92 A N MSE 95 1_555 covale 1.338 A MSE 92 A C MSE 95 1_555 A ALA 93 A N ALA 96 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION HI0442, hypothetical protein, structural genomics, Structure 2 Function Project, S2F, UNKNOWN FUNCTION Y442_HAEIN UNP 1 1 P44711 MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDA VRRAEELQKEKMASVTAGMPLPPGMKFPF 1 109 1J8B 1 109 P44711 A 1 4 112 1 CLONING ARTIFACT GLY -2 1J8B A P44711 UNP 1 1 CLONING ARTIFACT SER -1 1J8B A P44711 UNP 2 1 CLONING ARTIFACT HIS 0 1J8B A P44711 UNP 3 1 MET MODIFIED RESIDUE MSE 1 1J8B A P44711 UNP 1 4 1 MET MODIFIED RESIDUE MSE 11 1J8B A P44711 UNP 11 14 1 MET MODIFIED RESIDUE MSE 17 1J8B A P44711 UNP 17 20 1 MET MODIFIED RESIDUE MSE 21 1J8B A P44711 UNP 21 24 1 MET MODIFIED RESIDUE MSE 24 1J8B A P44711 UNP 24 27 1 MET MODIFIED RESIDUE MSE 62 1J8B A P44711 UNP 62 65 1 MET MODIFIED RESIDUE MSE 68 1J8B A P44711 UNP 68 71 1 MET MODIFIED RESIDUE MSE 92 1J8B A P44711 UNP 92 95 1 MET MODIFIED RESIDUE MSE 99 1J8B A P44711 UNP 99 102 1 MET MODIFIED RESIDUE MSE 105 1J8B A P44711 UNP 105 108 3 anti-parallel anti-parallel A GLU 32 A GLU 35 A SER 37 A SER 40 A VAL 42 A VAL 45 A ASN 47 A ASN 50 A CYS 52 A CYS 55 A ILE 57 A ILE 60 20 C 2 2 21