0.021195 0.000000 0.000000 0.000000 0.021195 0.000000 0.000000 0.000000 0.012494 0.00000 0.00000 0.00000 Xiong, Y. Deng, J. Sudarsanakumar, C. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 32 90.00 90.00 90.00 47.180 47.180 80.040 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking Ca 2 40.078 CALCIUM ION non-polymer C9 H13 Br N3 O7 P 386.093 n 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N CA N 74 N BR N 75 N P N 76 N O N 77 N O N 78 N O N 79 N N N 80 N C N 81 N C N 82 N O N 83 N N N 84 N C N 85 N N N 86 N C N 87 N C N 88 N C N 89 R C N 90 N O N 91 R C N 92 S C N 93 N O N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 R C N 119 N O N 120 R C Y 121 N N Y 122 N C Y 123 N N Y 124 N C N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N N Y 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N H N 148 N H N 149 N O N 150 N P N 151 N O N 152 N O N 153 N O N 154 N C N 155 R C N 156 N O N 157 S C N 158 N O N 159 R C N 160 N O N 161 R C N 162 N N N 163 N C N 164 N O N 165 N N N 166 N C N 167 N O N 168 N C N 169 N C N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N doub N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing Y 135 N sing Y 136 N sing Y 137 N doub N 138 N sing Y 139 N sing N 140 N sing Y 141 N doub N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N doub N 186 N sing N 187 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 313 573 582 10.1006/jmbi.2001.5045 11676540 Crystal structure of an RNA duplex r(gugucgcac)(2) with uridine bulges. 2001 10.2210/pdb1j9h/pdb pdb_00001j9h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 4 MAD M x-ray 1 0.92 1.0 14-BM-D APS 0.92 SYNCHROTRON APS BEAMLINE 14-BM-D 2910.639 5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3' 4 syn polymer 40.078 CALCIUM ION 4 syn non-polymer 18.015 water 146 nat water no yes GUGUCG(CBR)AC GUGUCGCAC A,B,C,D polyribonucleotide n n n n n n n n n 1 1.96 37.09 VAPOR DIFFUSION, HANGING DROP 6.0 20mM sodium cacodylate (pH 6.0), 10mM calcium chloride, 100mM sodium chloride, and 10%(v/v) MPD against 50% MPD in the reservoir, VAPOR DIFFUSION, HANGING DROP sodium cacodylate 1 CaCl2 1 NaCl 1 MPD 1 MPD 2 6.645 1 19 A 1 B 18 -0.714 A_G1:C18_B 1 -19.030 -0.265 0.434 -0.184 8.761 1 20 A 2 B 17 7.947 A_U2:A17_B 2 -22.781 0.082 0.298 -0.113 -0.333 1 19 A 3 B 16 -2.129 A_G3:CBR16_B 3 -9.006 -0.154 -0.039 -0.134 1.786 1 19 A 5 B 15 1.796 A_C5:G15_B 4 -2.125 0.169 -0.183 -0.105 0.179 1 19 A 6 B 14 1.612 A_G6:C14_B 5 -0.294 -0.142 -0.096 -0.101 -2.586 1 19 A 7 B 12 -2.170 A_CBR7:G12_B 6 -9.927 0.089 0.116 -0.130 -11.305 1 20 A 8 B 11 6.958 A_A8:U11_B 7 -24.032 -0.107 0.105 -0.140 -7.910 1 19 A 9 B 10 -1.580 A_C9:G10_B 8 -18.282 0.247 0.439 -0.241 9.382 1 19 C 19 D 36 -1.656 C_G19:C36_D 9 -17.250 -0.188 0.484 -0.180 9.619 1 20 C 20 D 35 7.074 C_U20:A35_D 10 -21.615 0.157 0.125 -0.118 1.145 1 19 C 21 D 34 -2.016 C_G21:CBR34_D 11 -11.652 -0.076 -0.021 -0.142 -2.503 1 19 C 23 D 33 0.965 C_C23:G33_D 12 1.546 0.131 -0.104 -0.087 0.469 1 19 C 24 D 32 1.122 C_G24:C32_D 13 0.239 -0.158 -0.117 -0.072 1.608 1 19 C 25 D 30 -1.902 C_CBR25:G30_D 14 -10.571 0.113 -0.064 -0.149 -9.582 1 20 C 26 D 29 10.101 C_A26:U29_D 15 -23.447 -0.175 0.185 -0.117 -6.016 1 19 C 27 D 28 1.140 C_C27:G28_D 16 -19.520 0.262 0.309 -0.177 3.063 34.248 A A 1 2 7.440 B B 18 17 3.218 4.370 0.342 -1.015 AA_G1U2:A17C18_BB 1 -0.520 0.885 33.972 -2.386 -0.660 2.188 38.063 A A 2 3 28.047 B B 17 16 3.218 17.635 -0.366 -1.490 AA_U2G3:CBR16A17_BB 2 1.405 -2.235 33.837 -4.255 0.718 2.974 51.423 A A 3 5 6.987 B B 16 15 3.027 6.048 -2.025 -1.131 AA_G3C5:G15CBR16_BB 3 -2.523 2.914 51.032 -1.685 2.175 3.363 28.358 A A 5 6 2.718 B B 15 14 3.460 1.331 -0.146 -2.088 AA_C5G6:C14G15_BB 4 -0.771 1.575 28.317 -4.582 0.112 2.929 51.494 A A 6 7 10.371 B B 14 12 3.057 8.965 2.070 -1.211 AA_G6CBR7:G12C14_BB 5 3.040 -3.517 50.675 -1.958 -2.191 2.174 37.632 A A 7 8 29.952 B B 12 11 3.269 18.527 0.498 -1.490 AA_CBR7A8:U11G12_BB 6 1.632 -2.639 32.860 -4.463 -0.583 3.009 33.448 A A 8 9 7.792 B B 11 10 3.190 4.471 -0.224 -1.226 AA_A8C9:G10U11_BB 7 -0.951 1.657 33.143 -2.833 0.240 3.139 33.732 C C 19 20 6.049 D D 36 35 3.281 3.504 0.441 -1.352 CC_G19U20:A35C36_DD 8 0.976 -1.685 33.541 -2.889 -0.604 2.150 37.349 C C 20 21 29.536 D D 35 34 3.261 18.163 -0.675 -1.558 CC_U20G21:CBR34A35_DD 9 -0.766 1.246 32.766 -4.557 0.965 3.053 51.220 C C 21 23 11.217 D D 34 33 3.172 9.639 -2.192 -1.209 CC_G21C23:G33CBR34_DD 10 -3.767 4.384 50.233 -2.038 2.285 3.248 27.728 C C 23 24 3.210 D D 33 32 3.366 1.537 0.023 -2.060 CC_C23G24:C32G33_DD 11 0.916 -1.913 27.672 -4.674 0.175 2.958 50.313 C C 24 25 9.851 D D 32 30 3.070 8.337 2.223 -1.259 CC_G24CBR25:G30C32_DD 12 3.031 -3.582 49.575 -2.035 -2.413 2.243 36.503 C C 25 26 28.659 D D 30 29 3.337 17.276 0.486 -1.536 CC_CBR25A26:U29G30_DD 13 -0.804 1.334 32.270 -4.627 -0.878 2.900 34.461 C C 26 27 9.687 D D 29 28 3.130 5.714 -0.603 -1.170 CC_A26C27:G28U29_DD 14 0.070 -0.119 33.998 -2.799 1.029 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-10-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-05-25 REL CA CALCIUM ION HOH water CA 103 2 CA CA 103 A CA 104 2 CA CA 104 B CA 101 2 CA CA 101 C CA 102 2 CA CA 102 D HOH 123 3 HOH HOH 123 A HOH 127 3 HOH HOH 127 A HOH 134 3 HOH HOH 134 A HOH 146 3 HOH HOH 146 A HOH 150 3 HOH HOH 150 A HOH 151 3 HOH HOH 151 A HOH 154 3 HOH HOH 154 A HOH 157 3 HOH HOH 157 A HOH 159 3 HOH HOH 159 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 175 3 HOH HOH 175 A HOH 179 3 HOH HOH 179 A HOH 195 3 HOH HOH 195 A HOH 196 3 HOH HOH 196 A HOH 202 3 HOH HOH 202 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 217 3 HOH HOH 217 A HOH 226 3 HOH HOH 226 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 234 3 HOH HOH 234 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 251 3 HOH HOH 251 A HOH 109 3 HOH HOH 109 B HOH 111 3 HOH HOH 111 B HOH 114 3 HOH HOH 114 B HOH 118 3 HOH HOH 118 B HOH 122 3 HOH HOH 122 B HOH 144 3 HOH HOH 144 B HOH 148 3 HOH HOH 148 B HOH 153 3 HOH HOH 153 B HOH 158 3 HOH HOH 158 B HOH 162 3 HOH HOH 162 B HOH 163 3 HOH HOH 163 B HOH 169 3 HOH HOH 169 B HOH 174 3 HOH HOH 174 B HOH 180 3 HOH HOH 180 B HOH 184 3 HOH HOH 184 B HOH 186 3 HOH HOH 186 B HOH 187 3 HOH HOH 187 B HOH 200 3 HOH HOH 200 B HOH 205 3 HOH HOH 205 B HOH 216 3 HOH HOH 216 B HOH 220 3 HOH HOH 220 B HOH 224 3 HOH HOH 224 B HOH 233 3 HOH HOH 233 B HOH 237 3 HOH HOH 237 B HOH 239 3 HOH HOH 239 B HOH 240 3 HOH HOH 240 B HOH 242 3 HOH HOH 242 B HOH 244 3 HOH HOH 244 B HOH 245 3 HOH HOH 245 B HOH 252 3 HOH HOH 252 B HOH 107 3 HOH HOH 107 C HOH 108 3 HOH HOH 108 C HOH 110 3 HOH HOH 110 C HOH 113 3 HOH HOH 113 C HOH 116 3 HOH HOH 116 C HOH 119 3 HOH HOH 119 C HOH 120 3 HOH HOH 120 C HOH 121 3 HOH HOH 121 C HOH 124 3 HOH HOH 124 C HOH 126 3 HOH HOH 126 C HOH 128 3 HOH HOH 128 C HOH 130 3 HOH HOH 130 C HOH 136 3 HOH HOH 136 C HOH 138 3 HOH HOH 138 C HOH 140 3 HOH HOH 140 C HOH 141 3 HOH HOH 141 C HOH 143 3 HOH HOH 143 C HOH 145 3 HOH HOH 145 C HOH 147 3 HOH HOH 147 C HOH 149 3 HOH HOH 149 C HOH 152 3 HOH HOH 152 C HOH 155 3 HOH HOH 155 C HOH 156 3 HOH HOH 156 C HOH 160 3 HOH HOH 160 C HOH 167 3 HOH HOH 167 C HOH 168 3 HOH HOH 168 C HOH 170 3 HOH HOH 170 C HOH 171 3 HOH HOH 171 C HOH 172 3 HOH HOH 172 C HOH 177 3 HOH HOH 177 C HOH 181 3 HOH HOH 181 C HOH 188 3 HOH HOH 188 C HOH 191 3 HOH HOH 191 C HOH 192 3 HOH HOH 192 C HOH 197 3 HOH HOH 197 C HOH 199 3 HOH HOH 199 C HOH 204 3 HOH HOH 204 C HOH 206 3 HOH HOH 206 C HOH 208 3 HOH HOH 208 C HOH 212 3 HOH HOH 212 C HOH 218 3 HOH HOH 218 C HOH 219 3 HOH HOH 219 C HOH 222 3 HOH HOH 222 C HOH 223 3 HOH HOH 223 C HOH 225 3 HOH HOH 225 C HOH 249 3 HOH HOH 249 C HOH 250 3 HOH HOH 250 C HOH 112 3 HOH HOH 112 D HOH 115 3 HOH HOH 115 D HOH 117 3 HOH HOH 117 D HOH 125 3 HOH HOH 125 D HOH 129 3 HOH HOH 129 D HOH 131 3 HOH HOH 131 D HOH 132 3 HOH HOH 132 D HOH 133 3 HOH HOH 133 D HOH 135 3 HOH HOH 135 D HOH 137 3 HOH HOH 137 D HOH 139 3 HOH HOH 139 D HOH 142 3 HOH HOH 142 D HOH 161 3 HOH HOH 161 D HOH 166 3 HOH HOH 166 D HOH 173 3 HOH HOH 173 D HOH 176 3 HOH HOH 176 D HOH 178 3 HOH HOH 178 D HOH 182 3 HOH HOH 182 D HOH 183 3 HOH HOH 183 D HOH 185 3 HOH HOH 185 D HOH 189 3 HOH HOH 189 D HOH 190 3 HOH HOH 190 D HOH 193 3 HOH HOH 193 D HOH 194 3 HOH HOH 194 D HOH 198 3 HOH HOH 198 D HOH 201 3 HOH HOH 201 D HOH 203 3 HOH HOH 203 D HOH 207 3 HOH HOH 207 D HOH 215 3 HOH HOH 215 D HOH 221 3 HOH HOH 221 D HOH 227 3 HOH HOH 227 D HOH 232 3 HOH HOH 232 D HOH 235 3 HOH HOH 235 D HOH 236 3 HOH HOH 236 D HOH 238 3 HOH HOH 238 D HOH 241 3 HOH HOH 241 D HOH 243 3 HOH HOH 243 D G 1 n 1 G 1 A U 2 n 2 U 2 A G 3 n 3 G 3 A U 4 n 4 U 4 A C 5 n 5 C 5 A G 6 n 6 G 6 A BRO 7 n 7 CBR 7 A A 8 n 8 A 8 A C 9 n 9 C 9 A G 10 n 1 G 10 B U 11 n 2 U 11 B G 12 n 3 G 12 B U 13 n 4 U 13 B C 14 n 5 C 14 B G 15 n 6 G 15 B BRO 16 n 7 CBR 16 B A 17 n 8 A 17 B C 18 n 9 C 18 B G 19 n 1 G 19 C U 20 n 2 U 20 C G 21 n 3 G 21 C U 22 n 4 U 22 C C 23 n 5 C 23 C G 24 n 6 G 24 C BRO 25 n 7 CBR 25 C A 26 n 8 A 26 C C 27 n 9 C 27 C G 28 n 1 G 28 D U 29 n 2 U 29 D G 30 n 3 G 30 D U 31 n 4 U 31 D C 32 n 5 C 32 D G 33 n 6 G 33 D BRO 34 n 7 CBR 34 D A 35 n 8 A 35 D C 36 n 9 C 36 D author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric A U 4 A OP2 U 4 1_555 A CA 103 A E CA CA 1_555 A C 5 A OP1 C 5 1_555 93.3 A U 4 A OP2 U 4 1_555 A CA 103 A E CA CA 1_555 A HOH 179 I O HOH 1_555 73.0 A C 5 A OP1 C 5 1_555 A CA 103 A E CA CA 1_555 A HOH 179 I O HOH 1_555 81.1 A U 4 A OP2 U 4 1_555 A CA 103 A E CA CA 1_555 A HOH 234 I O HOH 1_555 77.5 A C 5 A OP1 C 5 1_555 A CA 103 A E CA CA 1_555 A HOH 234 I O HOH 1_555 168.6 A HOH 179 I O HOH 1_555 A CA 103 A E CA CA 1_555 A HOH 234 I O HOH 1_555 89.8 A U 4 A OP2 U 4 1_555 A CA 103 A E CA CA 1_555 B C 18 B O2' C 9 6_565 76.0 A C 5 A OP1 C 5 1_555 A CA 103 A E CA CA 1_555 B C 18 B O2' C 9 6_565 102.5 A HOH 179 I O HOH 1_555 A CA 103 A E CA CA 1_555 B C 18 B O2' C 9 6_565 149.0 A HOH 234 I O HOH 1_555 A CA 103 A E CA CA 1_555 B C 18 B O2' C 9 6_565 82.0 A U 4 A OP2 U 4 1_555 A CA 103 A E CA CA 1_555 B C 18 B O3' C 9 6_565 131.1 A C 5 A OP1 C 5 1_555 A CA 103 A E CA CA 1_555 B C 18 B O3' C 9 6_565 75.6 A HOH 179 I O HOH 1_555 A CA 103 A E CA CA 1_555 B C 18 B O3' C 9 6_565 146.7 A HOH 234 I O HOH 1_555 A CA 103 A E CA CA 1_555 B C 18 B O3' C 9 6_565 115.5 B C 18 B O2' C 9 6_565 A CA 103 A E CA CA 1_555 B C 18 B O3' C 9 6_565 61.0 A U 4 A OP2 U 4 1_555 A CA 103 A E CA CA 1_555 D HOH 238 L O HOH 1_555 168.9 A C 5 A OP1 C 5 1_555 A CA 103 A E CA CA 1_555 D HOH 238 L O HOH 1_555 79.3 A HOH 179 I O HOH 1_555 A CA 103 A E CA CA 1_555 D HOH 238 L O HOH 1_555 97.5 A HOH 234 I O HOH 1_555 A CA 103 A E CA CA 1_555 D HOH 238 L O HOH 1_555 108.8 B C 18 B O2' C 9 6_565 A CA 103 A E CA CA 1_555 D HOH 238 L O HOH 1_555 113.5 B C 18 B O3' C 9 6_565 A CA 103 A E CA CA 1_555 D HOH 238 L O HOH 1_555 55.2 A C 5 A OP1 C 5 1_555 A CA 103 B E CA CA 1_555 A HOH 179 I O HOH 1_555 58.3 A C 5 A OP1 C 5 1_555 A CA 103 B E CA CA 1_555 A HOH 234 I O HOH 1_555 107.0 A HOH 179 I O HOH 1_555 A CA 103 B E CA CA 1_555 A HOH 234 I O HOH 1_555 65.2 A C 5 A OP1 C 5 1_555 A CA 103 B E CA CA 1_555 B C 18 B O2' C 9 6_565 81.4 A HOH 179 I O HOH 1_555 A CA 103 B E CA CA 1_555 B C 18 B O2' C 9 6_565 101.4 A HOH 234 I O HOH 1_555 A CA 103 B E CA CA 1_555 B C 18 B O2' C 9 6_565 68.3 A C 5 A OP1 C 5 1_555 A CA 103 B E CA CA 1_555 B C 18 B O3' C 9 6_565 81.5 A HOH 179 I O HOH 1_555 A CA 103 B E CA CA 1_555 B C 18 B O3' C 9 6_565 139.6 A HOH 234 I O HOH 1_555 A CA 103 B E CA CA 1_555 B C 18 B O3' C 9 6_565 131.6 B C 18 B O2' C 9 6_565 A CA 103 B E CA CA 1_555 B C 18 B O3' C 9 6_565 66.1 A C 5 A OP1 C 5 1_555 A CA 103 B E CA CA 1_555 D HOH 182 L O HOH 1_555 159.2 A HOH 179 I O HOH 1_555 A CA 103 B E CA CA 1_555 D HOH 182 L O HOH 1_555 141.1 A HOH 234 I O HOH 1_555 A CA 103 B E CA CA 1_555 D HOH 182 L O HOH 1_555 91.8 B C 18 B O2' C 9 6_565 A CA 103 B E CA CA 1_555 D HOH 182 L O HOH 1_555 97.8 B C 18 B O3' C 9 6_565 A CA 103 B E CA CA 1_555 D HOH 182 L O HOH 1_555 79.2 A C 5 A OP1 C 5 1_555 A CA 103 B E CA CA 1_555 D HOH 238 L O HOH 1_555 94.1 A HOH 179 I O HOH 1_555 A CA 103 B E CA CA 1_555 D HOH 238 L O HOH 1_555 101.6 A HOH 234 I O HOH 1_555 A CA 103 B E CA CA 1_555 D HOH 238 L O HOH 1_555 140.5 B C 18 B O2' C 9 6_565 A CA 103 B E CA CA 1_555 D HOH 238 L O HOH 1_555 149.6 B C 18 B O3' C 9 6_565 A CA 103 B E CA CA 1_555 D HOH 238 L O HOH 1_555 83.5 D HOH 182 L O HOH 1_555 A CA 103 B E CA CA 1_555 D HOH 238 L O HOH 1_555 76.0 A C 9 A O2' C 9 6_575 B CA 104 B F CA CA 1_555 A C 9 A O3' C 9 6_575 61.3 A C 9 A O2' C 9 6_575 B CA 104 B F CA CA 1_555 B U 13 B OP2 U 4 1_555 86.4 A C 9 A O3' C 9 6_575 B CA 104 B F CA CA 1_555 B U 13 B OP2 U 4 1_555 140.9 A C 9 A O2' C 9 6_575 B CA 104 B F CA CA 1_555 B C 14 B OP1 C 5 1_555 106.1 A C 9 A O3' C 9 6_575 B CA 104 B F CA CA 1_555 B C 14 B OP1 C 5 1_555 73.7 B U 13 B OP2 U 4 1_555 B CA 104 B F CA CA 1_555 B C 14 B OP1 C 5 1_555 97.2 A C 9 A O2' C 9 6_575 B CA 104 B F CA CA 1_555 B HOH 163 J O HOH 1_555 94.2 A C 9 A O3' C 9 6_575 B CA 104 B F CA CA 1_555 B HOH 163 J O HOH 1_555 123.0 B U 13 B OP2 U 4 1_555 B CA 104 B F CA CA 1_555 B HOH 163 J O HOH 1_555 77.7 B C 14 B OP1 C 5 1_555 B CA 104 B F CA CA 1_555 B HOH 163 J O HOH 1_555 158.8 A C 9 A O2' C 9 6_575 B CA 104 B F CA CA 1_555 B HOH 237 J O HOH 1_555 141.6 A C 9 A O3' C 9 6_575 B CA 104 B F CA CA 1_555 B HOH 237 J O HOH 1_555 155.5 B U 13 B OP2 U 4 1_555 B CA 104 B F CA CA 1_555 B HOH 237 J O HOH 1_555 56.0 B C 14 B OP1 C 5 1_555 B CA 104 B F CA CA 1_555 B HOH 237 J O HOH 1_555 87.9 B HOH 163 J O HOH 1_555 B CA 104 B F CA CA 1_555 B HOH 237 J O HOH 1_555 72.0 A C 9 A O3' C 9 6_575 B CA 104 A F CA CA 1_555 A C 9 A O2' C 9 6_575 62.8 A C 9 A O3' C 9 6_575 B CA 104 A F CA CA 1_555 A HOH 196 I O HOH 6_575 85.9 A C 9 A O2' C 9 6_575 B CA 104 A F CA CA 1_555 A HOH 196 I O HOH 6_575 93.4 A C 9 A O3' C 9 6_575 B CA 104 A F CA CA 1_555 B C 14 B OP1 C 5 1_555 81.9 A C 9 A O2' C 9 6_575 B CA 104 A F CA CA 1_555 B C 14 B OP1 C 5 1_555 77.0 A HOH 196 I O HOH 6_575 B CA 104 A F CA CA 1_555 B C 14 B OP1 C 5 1_555 167.0 A C 9 A O3' C 9 6_575 B CA 104 A F CA CA 1_555 B HOH 163 J O HOH 1_555 129.2 A C 9 A O2' C 9 6_575 B CA 104 A F CA CA 1_555 B HOH 163 J O HOH 1_555 67.8 A HOH 196 I O HOH 6_575 B CA 104 A F CA CA 1_555 B HOH 163 J O HOH 1_555 86.2 B C 14 B OP1 C 5 1_555 B CA 104 A F CA CA 1_555 B HOH 163 J O HOH 1_555 98.1 A C 9 A O3' C 9 6_575 B CA 104 A F CA CA 1_555 B HOH 252 J O HOH 1_555 78.5 A C 9 A O2' C 9 6_575 B CA 104 A F CA CA 1_555 B HOH 252 J O HOH 1_555 139.5 A HOH 196 I O HOH 6_575 B CA 104 A F CA CA 1_555 B HOH 252 J O HOH 1_555 95.2 B C 14 B OP1 C 5 1_555 B CA 104 A F CA CA 1_555 B HOH 252 J O HOH 1_555 86.7 B HOH 163 J O HOH 1_555 B CA 104 A F CA CA 1_555 B HOH 252 J O HOH 1_555 152.3 B HOH 118 J O HOH 2_765 C CA 101 G CA CA 1_555 C U 22 C OP2 U 4 1_555 154.1 B HOH 118 J O HOH 2_765 C CA 101 G CA CA 1_555 C C 23 C OP1 C 5 1_555 97.2 C U 22 C OP2 U 4 1_555 C CA 101 G CA CA 1_555 C C 23 C OP1 C 5 1_555 86.4 B HOH 118 J O HOH 2_765 C CA 101 G CA CA 1_555 C HOH 110 K O HOH 1_555 84.0 C U 22 C OP2 U 4 1_555 C CA 101 G CA CA 1_555 C HOH 110 K O HOH 1_555 85.5 C C 23 C OP1 C 5 1_555 C CA 101 G CA CA 1_555 C HOH 110 K O HOH 1_555 163.6 B HOH 118 J O HOH 2_765 C CA 101 G CA CA 1_555 C HOH 141 K O HOH 1_555 78.6 C U 22 C OP2 U 4 1_555 C CA 101 G CA CA 1_555 C HOH 141 K O HOH 1_555 77.2 C C 23 C OP1 C 5 1_555 C CA 101 G CA CA 1_555 C HOH 141 K O HOH 1_555 77.8 C HOH 110 K O HOH 1_555 C CA 101 G CA CA 1_555 C HOH 141 K O HOH 1_555 86.5 B HOH 118 J O HOH 2_765 C CA 101 G CA CA 1_555 D C 36 D O3' C 9 5_756 77.4 C U 22 C OP2 U 4 1_555 C CA 101 G CA CA 1_555 D C 36 D O3' C 9 5_756 128.1 C C 23 C OP1 C 5 1_555 C CA 101 G CA CA 1_555 D C 36 D O3' C 9 5_756 77.5 C HOH 110 K O HOH 1_555 C CA 101 G CA CA 1_555 D C 36 D O3' C 9 5_756 118.5 C HOH 141 K O HOH 1_555 C CA 101 G CA CA 1_555 D C 36 D O3' C 9 5_756 142.8 B HOH 118 J O HOH 2_765 C CA 101 G CA CA 1_555 D C 36 D O2' C 9 5_756 128.7 C U 22 C OP2 U 4 1_555 C CA 101 G CA CA 1_555 D C 36 D O2' C 9 5_756 74.2 C C 23 C OP1 C 5 1_555 C CA 101 G CA CA 1_555 D C 36 D O2' C 9 5_756 103.9 C HOH 110 K O HOH 1_555 C CA 101 G CA CA 1_555 D C 36 D O2' C 9 5_756 87.6 C HOH 141 K O HOH 1_555 C CA 101 G CA CA 1_555 D C 36 D O2' C 9 5_756 151.2 D C 36 D O3' C 9 5_756 C CA 101 G CA CA 1_555 D C 36 D O2' C 9 5_756 62.9 C C 27 C O3' C 9 5_656 D CA 102 H CA CA 1_555 C C 27 C O2' C 9 5_656 63.2 C C 27 C O3' C 9 5_656 D CA 102 H CA CA 1_555 C HOH 119 K O HOH 5_656 118.3 C C 27 C O2' C 9 5_656 D CA 102 H CA CA 1_555 C HOH 119 K O HOH 5_656 85.2 C C 27 C O3' C 9 5_656 D CA 102 H CA CA 1_555 D U 31 D OP2 U 4 1_555 124.0 C C 27 C O2' C 9 5_656 D CA 102 H CA CA 1_555 D U 31 D OP2 U 4 1_555 71.8 C HOH 119 K O HOH 5_656 D CA 102 H CA CA 1_555 D U 31 D OP2 U 4 1_555 87.8 C C 27 C O3' C 9 5_656 D CA 102 H CA CA 1_555 D C 32 D OP1 C 5 1_555 77.2 C C 27 C O2' C 9 5_656 D CA 102 H CA CA 1_555 D C 32 D OP1 C 5 1_555 106.5 C HOH 119 K O HOH 5_656 D CA 102 H CA CA 1_555 D C 32 D OP1 C 5 1_555 164.1 D U 31 D OP2 U 4 1_555 D CA 102 H CA CA 1_555 D C 32 D OP1 C 5 1_555 85.8 C C 27 C O3' C 9 5_656 D CA 102 H CA CA 1_555 D HOH 132 L O HOH 1_555 77.0 C C 27 C O2' C 9 5_656 D CA 102 H CA CA 1_555 D HOH 132 L O HOH 1_555 127.9 C HOH 119 K O HOH 5_656 D CA 102 H CA CA 1_555 D HOH 132 L O HOH 1_555 85.6 D U 31 D OP2 U 4 1_555 D CA 102 H CA CA 1_555 D HOH 132 L O HOH 1_555 158.4 D C 32 D OP1 C 5 1_555 D CA 102 H CA CA 1_555 D HOH 132 L O HOH 1_555 95.1 C C 27 C O3' C 9 5_656 D CA 102 H CA CA 1_555 D HOH 139 L O HOH 1_555 143.3 C C 27 C O2' C 9 5_656 D CA 102 H CA CA 1_555 D HOH 139 L O HOH 1_555 151.1 C HOH 119 K O HOH 5_656 D CA 102 H CA CA 1_555 D HOH 139 L O HOH 1_555 86.6 D U 31 D OP2 U 4 1_555 D CA 102 H CA CA 1_555 D HOH 139 L O HOH 1_555 80.2 D C 32 D OP1 C 5 1_555 D CA 102 H CA CA 1_555 D HOH 139 L O HOH 1_555 77.9 D HOH 132 L O HOH 1_555 D CA 102 H CA CA 1_555 D HOH 139 L O HOH 1_555 78.9 A CBR 7 A CBR 7 DC B CBR 16 B CBR 7 DC C CBR 25 C CBR 7 DC D CBR 34 D CBR 7 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B O O HOH HOH 158 220 2.19 1 A G 1 0.056 SIDE CHAIN 0.234 0.212 1.4 20 3228 33271 97.8 1 2 MAD 1.4 20 146 904 10 748 0 1.4 20 1J9H 33934 0.083 1 22 9 99.3 data scaling SCALEPACK phasing MLPHARE refinement CNS 1.0 Crystal Structure of an RNA Duplex with Uridine Bulges 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N covale 1.603 both A G 6 A O3' G 6 1_555 A CBR 7 A P CBR 7 1_555 covale 1.625 both A CBR 7 A O3' CBR 7 1_555 A A 8 A P A 8 1_555 covale 1.617 both B G 15 B O3' G 6 1_555 B CBR 16 B P CBR 7 1_555 covale 1.600 both B CBR 16 B O3' CBR 7 1_555 B A 17 B P A 8 1_555 covale 1.610 both C G 24 C O3' G 6 1_555 C CBR 25 C P CBR 7 1_555 covale 1.614 both C CBR 25 C O3' CBR 7 1_555 C A 26 C P A 8 1_555 covale 1.604 both D G 33 D O3' G 6 1_555 D CBR 34 D P CBR 7 1_555 covale 1.615 both D CBR 34 D O3' CBR 7 1_555 D A 35 D P A 8 1_555 metalc 2.520 A A U 4 A OP2 U 4 1_555 A CA 103 E CA CA 1_555 metalc 2.010 A A C 5 A OP1 C 5 1_555 A CA 103 E CA CA 1_555 metalc 2.551 B A C 5 A OP1 C 5 1_555 A CA 103 E CA CA 1_555 metalc 2.268 B A C 9 A O2' C 9 6_575 B CA 104 F CA CA 1_555 metalc 3.003 B A C 9 A O3' C 9 6_575 B CA 104 F CA CA 1_555 metalc 2.253 A A C 9 A O3' C 9 6_575 B CA 104 F CA CA 1_555 metalc 2.927 A A C 9 A O2' C 9 6_575 B CA 104 F CA CA 1_555 metalc 2.454 A A CA 103 E CA CA 1_555 A HOH 179 I O HOH 1_555 metalc 3.297 B A CA 103 E CA CA 1_555 A HOH 179 I O HOH 1_555 metalc 2.019 A A CA 103 E CA CA 1_555 A HOH 234 I O HOH 1_555 metalc 2.435 B A CA 103 E CA CA 1_555 A HOH 234 I O HOH 1_555 metalc 2.420 A A CA 103 E CA CA 1_555 B C 18 B O2' C 9 6_565 metalc 2.867 A A CA 103 E CA CA 1_555 B C 18 B O3' C 9 6_565 metalc 2.757 B A CA 103 E CA CA 1_555 B C 18 B O2' C 9 6_565 metalc 2.120 B A CA 103 E CA CA 1_555 B C 18 B O3' C 9 6_565 metalc 2.635 B A CA 103 E CA CA 1_555 D HOH 182 L O HOH 1_555 metalc 2.086 B A CA 103 E CA CA 1_555 D HOH 238 L O HOH 1_555 metalc 3.153 A A CA 103 E CA CA 1_555 D HOH 238 L O HOH 1_555 metalc 2.317 A A HOH 196 I O HOH 6_575 B CA 104 F CA CA 1_555 metalc 2.500 B B U 13 B OP2 U 4 1_555 B CA 104 F CA CA 1_555 metalc 2.444 A B C 14 B OP1 C 5 1_555 B CA 104 F CA CA 1_555 metalc 1.934 B B C 14 B OP1 C 5 1_555 B CA 104 F CA CA 1_555 metalc 2.562 A B CA 104 F CA CA 1_555 B HOH 163 J O HOH 1_555 metalc 1.915 B B CA 104 F CA CA 1_555 B HOH 163 J O HOH 1_555 metalc 3.356 B B CA 104 F CA CA 1_555 B HOH 237 J O HOH 1_555 metalc 2.256 A B CA 104 F CA CA 1_555 B HOH 252 J O HOH 1_555 metalc 2.479 B HOH 118 J O HOH 2_765 C CA 101 G CA CA 1_555 metalc 2.298 C U 22 C OP2 U 4 1_555 C CA 101 G CA CA 1_555 metalc 2.332 C C 23 C OP1 C 5 1_555 C CA 101 G CA CA 1_555 metalc 2.524 C C 27 C O3' C 9 5_656 D CA 102 H CA CA 1_555 metalc 2.423 C C 27 C O2' C 9 5_656 D CA 102 H CA CA 1_555 metalc 2.285 C CA 101 G CA CA 1_555 C HOH 110 K O HOH 1_555 metalc 2.427 C CA 101 G CA CA 1_555 C HOH 141 K O HOH 1_555 metalc 2.527 C CA 101 G CA CA 1_555 D C 36 D O3' C 9 5_756 metalc 2.393 C CA 101 G CA CA 1_555 D C 36 D O2' C 9 5_756 metalc 2.267 C HOH 119 K O HOH 5_656 D CA 102 H CA CA 1_555 metalc 2.326 D U 31 D OP2 U 4 1_555 D CA 102 H CA CA 1_555 metalc 2.342 D C 32 D OP1 C 5 1_555 D CA 102 H CA CA 1_555 metalc 2.468 D CA 102 H CA CA 1_555 D HOH 132 L O HOH 1_555 metalc 2.472 D CA 102 H CA CA 1_555 D HOH 139 L O HOH 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 18 B N3 C 9 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 18 B O2 C 9 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 18 B N4 C 9 1_555 hydrog WATSON-CRICK A U 2 A N3 U 2 1_555 B A 17 B N1 A 8 1_555 hydrog WATSON-CRICK A U 2 A O4 U 2 1_555 B A 17 B N6 A 8 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 B CBR 16 B N3 CBR 7 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 B CBR 16 B O2 CBR 7 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 B CBR 16 B N4 CBR 7 1_555 hydrog U-A PAIR A U 4 A N3 U 4 1_555 B A 17 B N3 A 8 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 B G 15 B N1 G 6 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 B G 15 B O6 G 6 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 B G 15 B N2 G 6 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 B C 14 B N3 C 5 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 B C 14 B O2 C 5 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 B C 14 B N4 C 5 1_555 hydrog WATSON-CRICK A CBR 7 A N3 CBR 7 1_555 B G 12 B N1 G 3 1_555 hydrog WATSON-CRICK A CBR 7 A N4 CBR 7 1_555 B G 12 B O6 G 3 1_555 hydrog WATSON-CRICK A CBR 7 A O2 CBR 7 1_555 B G 12 B N2 G 3 1_555 hydrog WATSON-CRICK A A 8 A N1 A 8 1_555 B U 11 B N3 U 2 1_555 hydrog WATSON-CRICK A A 8 A N6 A 8 1_555 B U 11 B O4 U 2 1_555 hydrog A-U PAIR A A 8 A N3 A 8 1_555 B U 13 B N3 U 4 1_555 hydrog WATSON-CRICK A C 9 A N3 C 9 1_555 B G 10 B N1 G 1 1_555 hydrog WATSON-CRICK A C 9 A N4 C 9 1_555 B G 10 B O6 G 1 1_555 hydrog WATSON-CRICK A C 9 A O2 C 9 1_555 B G 10 B N2 G 1 1_555 hydrog WATSON-CRICK C G 19 C N1 G 1 1_555 D C 36 D N3 C 9 1_555 hydrog WATSON-CRICK C G 19 C N2 G 1 1_555 D C 36 D O2 C 9 1_555 hydrog WATSON-CRICK C G 19 C O6 G 1 1_555 D C 36 D N4 C 9 1_555 hydrog WATSON-CRICK C U 20 C N3 U 2 1_555 D A 35 D N1 A 8 1_555 hydrog WATSON-CRICK C U 20 C O4 U 2 1_555 D A 35 D N6 A 8 1_555 hydrog WATSON-CRICK C G 21 C N1 G 3 1_555 D CBR 34 D N3 CBR 7 1_555 hydrog WATSON-CRICK C G 21 C N2 G 3 1_555 D CBR 34 D O2 CBR 7 1_555 hydrog WATSON-CRICK C G 21 C O6 G 3 1_555 D CBR 34 D N4 CBR 7 1_555 hydrog U-A PAIR C U 22 C N3 U 4 1_555 D A 35 D N3 A 8 1_555 hydrog WATSON-CRICK C C 23 C N3 C 5 1_555 D G 33 D N1 G 6 1_555 hydrog WATSON-CRICK C C 23 C N4 C 5 1_555 D G 33 D O6 G 6 1_555 hydrog WATSON-CRICK C C 23 C O2 C 5 1_555 D G 33 D N2 G 6 1_555 hydrog WATSON-CRICK C G 24 C N1 G 6 1_555 D C 32 D N3 C 5 1_555 hydrog WATSON-CRICK C G 24 C N2 G 6 1_555 D C 32 D O2 C 5 1_555 hydrog WATSON-CRICK C G 24 C O6 G 6 1_555 D C 32 D N4 C 5 1_555 hydrog WATSON-CRICK C CBR 25 C N3 CBR 7 1_555 D G 30 D N1 G 3 1_555 hydrog WATSON-CRICK C CBR 25 C N4 CBR 7 1_555 D G 30 D O6 G 3 1_555 hydrog WATSON-CRICK C CBR 25 C O2 CBR 7 1_555 D G 30 D N2 G 3 1_555 hydrog WATSON-CRICK C A 26 C N1 A 8 1_555 D U 29 D N3 U 2 1_555 hydrog WATSON-CRICK C A 26 C N6 A 8 1_555 D U 29 D O4 U 2 1_555 hydrog A-U PAIR C A 26 C N3 A 8 1_555 D U 31 D N3 U 4 1_555 hydrog WATSON-CRICK C C 27 C N3 C 9 1_555 D G 28 D N1 G 1 1_555 hydrog WATSON-CRICK C C 27 C N4 C 9 1_555 D G 28 D O6 G 1 1_555 hydrog WATSON-CRICK C C 27 C O2 C 9 1_555 D G 28 D N2 G 1 1_555 RNA Uridine Bulge, RNA duplex, A-form, Kink, Metal binding, RNA 1J9H PDB 1 1J9H 1 9 1J9H 1 9 1J9H A 1 1 9 10 18 1J9H 10 18 1J9H B 1 1 9 19 27 1J9H 19 27 1J9H C 1 1 9 28 36 1J9H 28 36 1J9H D 1 1 9 BINDING SITE FOR RESIDUE CA C 101 C CA 101 Software 6 BINDING SITE FOR RESIDUE CA D 102 D CA 102 Software 6 BINDING SITE FOR RESIDUE CA A 103 A CA 103 Software 7 BINDING SITE FOR RESIDUE CA B 104 B CA 104 Software 6 B HOH 118 J HOH 6 2_765 C U 22 C U 4 6 1_555 C C 23 C C 5 6 1_555 C HOH 110 K HOH 6 1_555 C HOH 141 K HOH 6 1_555 D C 36 D C 9 6 5_756 C C 27 C C 9 6 5_656 C HOH 119 K HOH 6 5_656 D U 31 D U 4 6 1_555 D C 32 D C 5 6 1_555 D HOH 132 L HOH 6 1_555 D HOH 139 L HOH 6 1_555 A U 4 A U 4 7 1_555 A C 5 A C 5 7 1_555 A HOH 179 I HOH 7 1_555 A HOH 234 I HOH 7 1_555 B C 18 B C 9 7 6_565 D HOH 182 L HOH 7 1_555 D HOH 238 L HOH 7 1_555 A C 9 A C 9 6 6_575 A HOH 196 I HOH 6 6_575 B U 13 B U 4 6 1_555 B C 14 B C 5 6 1_555 B HOH 163 J HOH 6 1_555 B HOH 252 J HOH 6 1_555 91 P 41 2 2