0.021932 0.000000 0.000000 0.000000 0.018643 0.000000 0.000000 0.000000 0.009552 0.00000 0.00000 0.00000 Fonze, E. Rhazi, N. Nguyen-Disteche, M. Charlier, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 45.596 53.638 104.690 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N NA N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 R C N 311 N O N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C N 361 N O N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Biochemistry BICHAW 0033 0006-2960 42 2895 2906 10.1021/bi027256x 12627955 Catalytic mechanism of the Streptomyces K15 DD-transpeptidase/penicillin-binding protein probed by site-directed mutagenesis and structural analysis. 2003 US J.Biol.Chem. JBCHA3 0071 0021-9258 274 21853 21860 10.1074/jbc.274.31.21853 The Crystal Structure of a Penicilloyl-Serine Transferase of Intermediate Penicillin Sensitivity 1999 UK J.Mol.Biol. JMOBAK 0070 0022-2836 241 295 297 10.1006/jmbi.1994.1504 Crystallization and X-Ray Diffraction Study of the Streptomyces K15 Penicillin-Binding DD-Transpeptidase 1994 10.2210/pdb1j9m/pdb pdb_00001j9m 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-06-05 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.933 1.0 ID14-3 ESRF 0.933 SYNCHROTRON ESRF BEAMLINE ID14-3 27517.287 DD-transpeptidase 3.4.16.4 K38H 1 man polymer 22.990 SODIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 197 nat water no no VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTHIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVG DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPARESDATKIMNYGFAL VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTHIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVG DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPARESDATKIMNYGFAL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Streptomyces K15 Streptomyces Streptomyces lividans sample 1958 Streptomyces sp. 457428 Streptomyces lividans TK24 TK24 1 2.33 47.12 VAPOR DIFFUSION, HANGING DROP 7.2 Tris 0.1 M, PEG 6K 30%, NaCl 0.4 M, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Source and taxonomy Version format compliance Database references Derived calculations Data collection 1 0 2001-06-13 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 2001-06-13 SPRSDE 1SKF contains the wild type enzyme RCSB Y RCSB 2001-05-28 REL REL NA SODIUM ION CL CHLORIDE ION HOH water SAL 600 2 NA NA 600 A SAL 600 3 CL CL 601 A WAT 300 4 HOH HOH 300 A WAT 301 4 HOH HOH 301 A WAT 302 4 HOH HOH 302 A WAT 303 4 HOH HOH 303 A WAT 304 4 HOH HOH 304 A WAT 305 4 HOH HOH 305 A WAT 306 4 HOH HOH 306 A WAT 307 4 HOH HOH 307 A WAT 308 4 HOH HOH 308 A WAT 309 4 HOH HOH 309 A WAT 310 4 HOH HOH 310 A WAT 311 4 HOH HOH 311 A WAT 312 4 HOH HOH 312 A WAT 313 4 HOH HOH 313 A WAT 314 4 HOH HOH 314 A WAT 315 4 HOH HOH 315 A WAT 316 4 HOH HOH 316 A WAT 317 4 HOH HOH 317 A WAT 318 4 HOH HOH 318 A WAT 319 4 HOH HOH 319 A WAT 320 4 HOH HOH 320 A WAT 321 4 HOH HOH 321 A WAT 322 4 HOH HOH 322 A WAT 323 4 HOH HOH 323 A WAT 324 4 HOH HOH 324 A WAT 325 4 HOH HOH 325 A WAT 326 4 HOH HOH 326 A WAT 327 4 HOH HOH 327 A WAT 328 4 HOH HOH 328 A WAT 329 4 HOH HOH 329 A WAT 330 4 HOH HOH 330 A WAT 331 4 HOH HOH 331 A WAT 332 4 HOH HOH 332 A WAT 333 4 HOH HOH 333 A WAT 334 4 HOH HOH 334 A WAT 335 4 HOH HOH 335 A WAT 336 4 HOH HOH 336 A WAT 337 4 HOH HOH 337 A WAT 338 4 HOH HOH 338 A WAT 339 4 HOH HOH 339 A WAT 340 4 HOH HOH 340 A WAT 341 4 HOH HOH 341 A WAT 342 4 HOH HOH 342 A WAT 343 4 HOH HOH 343 A WAT 344 4 HOH HOH 344 A WAT 345 4 HOH HOH 345 A WAT 346 4 HOH HOH 346 A WAT 347 4 HOH HOH 347 A WAT 348 4 HOH HOH 348 A WAT 349 4 HOH HOH 349 A WAT 350 4 HOH HOH 350 A WAT 351 4 HOH HOH 351 A WAT 352 4 HOH HOH 352 A WAT 353 4 HOH HOH 353 A WAT 354 4 HOH HOH 354 A WAT 355 4 HOH HOH 355 A WAT 356 4 HOH HOH 356 A WAT 357 4 HOH HOH 357 A WAT 358 4 HOH HOH 358 A WAT 359 4 HOH HOH 359 A WAT 360 4 HOH HOH 360 A WAT 361 4 HOH HOH 361 A WAT 362 4 HOH HOH 362 A WAT 363 4 HOH HOH 363 A WAT 364 4 HOH HOH 364 A WAT 365 4 HOH HOH 365 A WAT 366 4 HOH HOH 366 A WAT 367 4 HOH HOH 367 A WAT 368 4 HOH HOH 368 A WAT 369 4 HOH HOH 369 A WAT 370 4 HOH HOH 370 A WAT 371 4 HOH HOH 371 A WAT 372 4 HOH HOH 372 A WAT 373 4 HOH HOH 373 A WAT 374 4 HOH HOH 374 A WAT 375 4 HOH HOH 375 A WAT 376 4 HOH HOH 376 A WAT 377 4 HOH HOH 377 A WAT 378 4 HOH HOH 378 A WAT 379 4 HOH HOH 379 A WAT 380 4 HOH HOH 380 A WAT 381 4 HOH HOH 381 A WAT 382 4 HOH HOH 382 A WAT 383 4 HOH HOH 383 A WAT 384 4 HOH HOH 384 A WAT 385 4 HOH HOH 385 A WAT 386 4 HOH HOH 386 A WAT 387 4 HOH HOH 387 A WAT 388 4 HOH HOH 388 A WAT 389 4 HOH HOH 389 A WAT 390 4 HOH HOH 390 A WAT 391 4 HOH HOH 391 A WAT 392 4 HOH HOH 392 A WAT 393 4 HOH HOH 393 A WAT 394 4 HOH HOH 394 A WAT 395 4 HOH HOH 395 A WAT 396 4 HOH HOH 396 A WAT 397 4 HOH HOH 397 A WAT 398 4 HOH HOH 398 A WAT 399 4 HOH HOH 399 A WAT 400 4 HOH HOH 400 A WAT 401 4 HOH HOH 401 A WAT 402 4 HOH HOH 402 A WAT 403 4 HOH HOH 403 A WAT 404 4 HOH HOH 404 A WAT 405 4 HOH HOH 405 A WAT 406 4 HOH HOH 406 A WAT 407 4 HOH HOH 407 A WAT 408 4 HOH HOH 408 A WAT 409 4 HOH HOH 409 A WAT 410 4 HOH HOH 410 A WAT 411 4 HOH HOH 411 A WAT 412 4 HOH HOH 412 A WAT 413 4 HOH HOH 413 A WAT 414 4 HOH HOH 414 A WAT 415 4 HOH HOH 415 A WAT 416 4 HOH HOH 416 A WAT 417 4 HOH HOH 417 A WAT 418 4 HOH HOH 418 A WAT 419 4 HOH HOH 419 A WAT 420 4 HOH HOH 420 A WAT 421 4 HOH HOH 421 A WAT 422 4 HOH HOH 422 A WAT 423 4 HOH HOH 423 A WAT 424 4 HOH HOH 424 A WAT 425 4 HOH HOH 425 A WAT 426 4 HOH HOH 426 A WAT 427 4 HOH HOH 427 A WAT 428 4 HOH HOH 428 A WAT 429 4 HOH HOH 429 A WAT 430 4 HOH HOH 430 A WAT 431 4 HOH HOH 431 A WAT 432 4 HOH HOH 432 A WAT 433 4 HOH HOH 433 A WAT 434 4 HOH HOH 434 A WAT 435 4 HOH HOH 435 A WAT 436 4 HOH HOH 436 A WAT 437 4 HOH HOH 437 A WAT 438 4 HOH HOH 438 A WAT 439 4 HOH HOH 439 A WAT 440 4 HOH HOH 440 A WAT 441 4 HOH HOH 441 A WAT 442 4 HOH HOH 442 A WAT 443 4 HOH HOH 443 A WAT 444 4 HOH HOH 444 A WAT 445 4 HOH HOH 445 A WAT 446 4 HOH HOH 446 A WAT 447 4 HOH HOH 447 A WAT 448 4 HOH HOH 448 A WAT 449 4 HOH HOH 449 A WAT 450 4 HOH HOH 450 A WAT 451 4 HOH HOH 451 A WAT 452 4 HOH HOH 452 A WAT 453 4 HOH HOH 453 A WAT 454 4 HOH HOH 454 A WAT 455 4 HOH HOH 455 A WAT 456 4 HOH HOH 456 A WAT 457 4 HOH HOH 457 A WAT 458 4 HOH HOH 458 A WAT 459 4 HOH HOH 459 A WAT 460 4 HOH HOH 460 A WAT 461 4 HOH HOH 461 A WAT 462 4 HOH HOH 462 A WAT 463 4 HOH HOH 463 A WAT 464 4 HOH HOH 464 A WAT 465 4 HOH HOH 465 A WAT 466 4 HOH HOH 466 A WAT 467 4 HOH HOH 467 A WAT 468 4 HOH HOH 468 A WAT 469 4 HOH HOH 469 A WAT 470 4 HOH HOH 470 A WAT 471 4 HOH HOH 471 A WAT 472 4 HOH HOH 472 A WAT 473 4 HOH HOH 473 A WAT 474 4 HOH HOH 474 A WAT 475 4 HOH HOH 475 A WAT 476 4 HOH HOH 476 A WAT 477 4 HOH HOH 477 A WAT 478 4 HOH HOH 478 A WAT 479 4 HOH HOH 479 A WAT 480 4 HOH HOH 480 A WAT 481 4 HOH HOH 481 A WAT 482 4 HOH HOH 482 A WAT 483 4 HOH HOH 483 A WAT 484 4 HOH HOH 484 A WAT 485 4 HOH HOH 485 A WAT 486 4 HOH HOH 486 A WAT 487 4 HOH HOH 487 A WAT 488 4 HOH HOH 488 A WAT 489 4 HOH HOH 489 A WAT 490 4 HOH HOH 490 A WAT 491 4 HOH HOH 491 A WAT 492 4 HOH HOH 492 A WAT 493 4 HOH HOH 493 A WAT 494 4 HOH HOH 494 A WAT 495 4 HOH HOH 495 A WAT 496 4 HOH HOH 496 A n 1 1 A n 2 2 A LYS 3 n 3 LYS 3 A PRO 4 n 4 PRO 4 A THR 5 n 5 THR 5 A ILE 6 n 6 ILE 6 A ALA 7 n 7 ALA 7 A ALA 8 n 8 ALA 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A GLY 11 n 11 GLY 11 A TYR 12 n 12 TYR 12 A ALA 13 n 13 ALA 13 A MET 14 n 14 MET 14 A ASN 15 n 15 ASN 15 A ASN 16 n 16 ASN 16 A GLY 17 n 17 GLY 17 A THR 18 n 18 THR 18 A GLY 19 n 19 GLY 19 A THR 20 n 20 THR 20 A THR 21 n 21 THR 21 A LEU 22 n 22 LEU 22 A TYR 23 n 23 TYR 23 A THR 24 n 24 THR 24 A LYS 25 n 25 LYS 25 A ALA 26 n 26 ALA 26 A ALA 27 n 27 ALA 27 A ASP 28 n 28 ASP 28 A THR 29 n 29 THR 29 A ARG 30 n 30 ARG 30 A ARG 31 n 31 ARG 31 A SER 32 n 32 SER 32 A THR 33 n 33 THR 33 A GLY 34 n 34 GLY 34 A SER 35 n 35 SER 35 A THR 36 n 36 THR 36 A THR 37 n 37 THR 37 A HIS 38 n 38 HIS 38 A ILE 39 n 39 ILE 39 A MET 40 n 40 MET 40 A THR 41 n 41 THR 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A VAL 44 n 44 VAL 44 A VAL 45 n 45 VAL 45 A LEU 46 n 46 LEU 46 A ALA 47 n 47 ALA 47 A GLN 48 n 48 GLN 48 A SER 49 n 49 SER 49 A ASN 50 n 50 ASN 50 A LEU 51 n 51 LEU 51 A ASN 52 n 52 ASN 52 A LEU 53 n 53 LEU 53 A ASP 54 n 54 ASP 54 A ALA 55 n 55 ALA 55 A LYS 56 n 56 LYS 56 A VAL 57 n 57 VAL 57 A THR 58 n 58 THR 58 A ILE 59 n 59 ILE 59 A GLN 60 n 60 GLN 60 A LYS 61 n 61 LYS 61 A ALA 62 n 62 ALA 62 A TYR 63 n 63 TYR 63 A SER 64 n 64 SER 64 A ASP 65 n 65 ASP 65 A TYR 66 n 66 TYR 66 A VAL 67 n 67 VAL 67 A VAL 68 n 68 VAL 68 A ALA 69 n 69 ALA 69 A ASN 70 n 70 ASN 70 A ASN 71 n 71 ASN 71 A ALA 72 n 72 ALA 72 A SER 73 n 73 SER 73 A GLN 74 n 74 GLN 74 A ALA 75 n 75 ALA 75 A HIS 76 n 76 HIS 76 A LEU 77 n 77 LEU 77 A ILE 78 n 78 ILE 78 A VAL 79 n 79 VAL 79 A GLY 80 n 80 GLY 80 A ASP 81 n 81 ASP 81 A LYS 82 n 82 LYS 82 A VAL 83 n 83 VAL 83 A THR 84 n 84 THR 84 A VAL 85 n 85 VAL 85 A ARG 86 n 86 ARG 86 A GLN 87 n 87 GLN 87 A LEU 88 n 88 LEU 88 A LEU 89 n 89 LEU 89 A TYR 90 n 90 TYR 90 A GLY 91 n 91 GLY 91 A LEU 92 n 92 LEU 92 A MET 93 n 93 MET 93 A LEU 94 n 94 LEU 94 A PRO 95 n 95 PRO 95 A SER 96 n 96 SER 96 A GLY 97 n 97 GLY 97 A CYS 98 n 98 CYS 98 A ASP 99 n 99 ASP 99 A ALA 100 n 100 ALA 100 A ALA 101 n 101 ALA 101 A TYR 102 n 102 TYR 102 A ALA 103 n 103 ALA 103 A LEU 104 n 104 LEU 104 A ALA 105 n 105 ALA 105 A ASP 106 n 106 ASP 106 A LYS 107 n 107 LYS 107 A TYR 108 n 108 TYR 108 A GLY 109 n 109 GLY 109 A SER 110 n 110 SER 110 A GLY 111 n 111 GLY 111 A SER 112 n 112 SER 112 A THR 113 n 113 THR 113 A ARG 114 n 114 ARG 114 A ALA 115 n 115 ALA 115 A ALA 116 n 116 ALA 116 A ARG 117 n 117 ARG 117 A VAL 118 n 118 VAL 118 A LYS 119 n 119 LYS 119 A SER 120 n 120 SER 120 A PHE 121 n 121 PHE 121 A ILE 122 n 122 ILE 122 A GLY 123 n 123 GLY 123 A LYS 124 n 124 LYS 124 A MET 125 n 125 MET 125 A ASN 126 n 126 ASN 126 A THR 127 n 127 THR 127 A ALA 128 n 128 ALA 128 A ALA 129 n 129 ALA 129 A THR 130 n 130 THR 130 A ASN 131 n 131 ASN 131 A LEU 132 n 132 LEU 132 A GLY 133 n 133 GLY 133 A LEU 134 n 134 LEU 134 A HIS 135 n 135 HIS 135 A ASN 136 n 136 ASN 136 A THR 137 n 137 THR 137 A HIS 138 n 138 HIS 138 A PHE 139 n 139 PHE 139 A ASP 140 n 140 ASP 140 A SER 141 n 141 SER 141 A PHE 142 n 142 PHE 142 A ASP 143 n 143 ASP 143 A GLY 144 n 144 GLY 144 A n 145 145 A n 146 146 A n 147 147 A GLY 148 n 148 GLY 148 A ALA 149 n 149 ALA 149 A ASN 150 n 150 ASN 150 A TYR 151 n 151 TYR 151 A SER 152 n 152 SER 152 A THR 153 n 153 THR 153 A PRO 154 n 154 PRO 154 A ARG 155 n 155 ARG 155 A ASP 156 n 156 ASP 156 A LEU 157 n 157 LEU 157 A THR 158 n 158 THR 158 A LYS 159 n 159 LYS 159 A ILE 160 n 160 ILE 160 A ALA 161 n 161 ALA 161 A SER 162 n 162 SER 162 A SER 163 n 163 SER 163 A ALA 164 n 164 ALA 164 A MET 165 n 165 MET 165 A LYS 166 n 166 LYS 166 A ASN 167 n 167 ASN 167 A SER 168 n 168 SER 168 A THR 169 n 169 THR 169 A PHE 170 n 170 PHE 170 A ARG 171 n 171 ARG 171 A THR 172 n 172 THR 172 A VAL 173 n 173 VAL 173 A VAL 174 n 174 VAL 174 A LYS 175 n 175 LYS 175 A THR 176 n 176 THR 176 A LYS 177 n 177 LYS 177 A ALA 178 n 178 ALA 178 A TYR 179 n 179 TYR 179 A THR 180 n 180 THR 180 A ALA 181 n 181 ALA 181 A LYS 182 n 182 LYS 182 A THR 183 n 183 THR 183 A VAL 184 n 184 VAL 184 A THR 185 n 185 THR 185 A LYS 186 n 186 LYS 186 A THR 187 n 187 THR 187 A GLY 188 n 188 GLY 188 A SER 189 n 189 SER 189 A ILE 190 n 190 ILE 190 A ARG 191 n 191 ARG 191 A THR 192 n 192 THR 192 A MET 193 n 193 MET 193 A ASP 194 n 194 ASP 194 A THR 195 n 195 THR 195 A TRP 196 n 196 TRP 196 A LYS 197 n 197 LYS 197 A ASN 198 n 198 ASN 198 A THR 199 n 199 THR 199 A ASN 200 n 200 ASN 200 A GLY 201 n 201 GLY 201 A LEU 202 n 202 LEU 202 A LEU 203 n 203 LEU 203 A SER 204 n 204 SER 204 A SER 205 n 205 SER 205 A TYR 206 n 206 TYR 206 A SER 207 n 207 SER 207 A GLY 208 n 208 GLY 208 A ALA 209 n 209 ALA 209 A ILE 210 n 210 ILE 210 A GLY 211 n 211 GLY 211 A VAL 212 n 212 VAL 212 A LYS 213 n 213 LYS 213 A THR 214 n 214 THR 214 A GLY 215 n 215 GLY 215 A SER 216 n 216 SER 216 A GLY 217 n 217 GLY 217 A PRO 218 n 218 PRO 218 A GLU 219 n 219 GLU 219 A ALA 220 n 220 ALA 220 A LYS 221 n 221 LYS 221 A TYR 222 n 222 TYR 222 A CYS 223 n 223 CYS 223 A LEU 224 n 224 LEU 224 A VAL 225 n 225 VAL 225 A PHE 226 n 226 PHE 226 A ALA 227 n 227 ALA 227 A ALA 228 n 228 ALA 228 A THR 229 n 229 THR 229 A ARG 230 n 230 ARG 230 A GLY 231 n 231 GLY 231 A GLY 232 n 232 GLY 232 A LYS 233 n 233 LYS 233 A THR 234 n 234 THR 234 A VAL 235 n 235 VAL 235 A ILE 236 n 236 ILE 236 A GLY 237 n 237 GLY 237 A THR 238 n 238 THR 238 A VAL 239 n 239 VAL 239 A LEU 240 n 240 LEU 240 A ALA 241 n 241 ALA 241 A SER 242 n 242 SER 242 A THR 243 n 243 THR 243 A SER 244 n 244 SER 244 A ILE 245 n 245 ILE 245 A PRO 246 n 246 PRO 246 A ALA 247 n 247 ALA 247 A ARG 248 n 248 ARG 248 A GLU 249 n 249 GLU 249 A SER 250 n 250 SER 250 A ASP 251 n 251 ASP 251 A ALA 252 n 252 ALA 252 A THR 253 n 253 THR 253 A LYS 254 n 254 LYS 254 A ILE 255 n 255 ILE 255 A MET 256 n 256 MET 256 A ASN 257 n 257 ASN 257 A TYR 258 n 258 TYR 258 A GLY 259 n 259 GLY 259 A PHE 260 n 260 PHE 260 A ALA 261 n 261 ALA 261 A LEU 262 n 262 LEU 262 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 25 A O LYS 25 A N GLY 11 A N GLY 11 A N MET 14 A N MET 14 A O ILE 236 A O ILE 236 A N SER 242 A N SER 242 A O TYR 222 A O TYR 222 A O ALA 227 A O ALA 227 A N ILE 210 A N ILE 210 A N ARG 31 A N ARG 31 A O SER 152 A O SER 152 A O VAL 57 A O VAL 57 A N VAL 83 A N VAL 83 A O TYR 179 A O TYR 179 A N TRP 196 A N TRP 196 A O THR 183 A O THR 183 A N ARG 191 A N ARG 191 1 A VAL 1 A VAL 1 1 Y 1 A THR 2 A THR 2 1 Y 1 A ILE 145 A ILE 145 1 Y 1 A GLY 146 A GLY 146 1 Y 1 A ASN 147 A ASN 147 1 Y 1 A LYS 25 -161.18 101.09 1 A SER 152 -162.07 -168.96 1 A VAL 212 -127.10 -54.85 1 A LYS 221 63.83 -147.53 15.0 0.00 0.00 0.00 0.00 0.00 0.00 THE ELECTRON DENSITY FOR RESIDUES ILE 145, GLY 146 and ASN 147 IS NOT WELL-DEFINED. THOSE RESIDUES WERE EXCLUDED FROM THE REFINEMENT PROCESS. 0.256 0.007 0.218 0.218 1.65 8.00 1529 30376 5.0 96.9 RANDOM 100000.00 0.10 1 RESTRAINED 2.0 MOLECULAR REPLACEMENT 0.23 0.20 5.00 0.12 0.17 1.65 8.00 197 2093 2 0 1894 0.007 1.2 24.6 0.66 1.06 1.50 1.62 2.00 2.17 2.00 3.26 2.50 0.285 0.025 0.334 1.71 133 2618 10 4.8 89.0 17.1 1.56 34.71 1J9M 37427 34332 0. 0. 0.038 1 19.13 3.7 85.9 0.139 1.56 1.60 1 1.8 39.7 data reduction XDS phasing AMoRE refinement X-PLOR 3.851 data scaling XDS K38H mutant of Streptomyces K15 DD-transpeptidase 1 N N 2 N N 3 N N 4 N N The biological assembly is a monomer A GLY 34 A GLY 34 HELX_P A THR 36 A THR 36 5 1 3 A THR 37 A THR 37 HELX_P A ALA 47 A ALA 47 1 2 11 A GLN 60 A GLN 60 HELX_P A ASN 71 A ASN 71 1 3 12 A VAL 85 A VAL 85 HELX_P A LEU 94 A LEU 94 1 4 10 A GLY 97 A GLY 97 HELX_P A GLY 109 A GLY 109 1 5 13 A THR 113 A THR 113 HELX_P A LEU 132 A LEU 132 1 6 20 A THR 153 A THR 153 HELX_P A MET 165 A MET 165 1 7 13 A ASN 167 A ASN 167 HELX_P A LYS 175 A LYS 175 1 8 9 A GLY 201 A GLY 201 HELX_P A TYR 206 A TYR 206 1 9 6 A SER 244 A SER 244 HELX_P A LEU 262 A LEU 262 1 10 19 metalc 2.895 A THR 214 A OG1 THR 214 1_555 A NA 600 B NA NA 1_555 HYDROLASE penicillin-binding, DD-transpeptidase, serine peptidase, beta-lactamase, hydrolase carboxypeptidase, HYDROLASE A GLY 211 A GLY 211 1 A VAL 212 A VAL 212 1.90 DACX_STRSK UNP 1 30 P39042 VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANKPSQAHLIVG DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSQAAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRHLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPARESDATKIMNYGFAL 30 291 1J9M 1 262 P39042 A 1 1 262 1 LYS engineered mutation HIS 38 1J9M A P39042 UNP 67 38 1 LYS conflict ASN 71 1J9M A P39042 UNP 100 71 1 PRO conflict ALA 72 1J9M A P39042 UNP 101 72 1 GLN conflict THR 113 1J9M A P39042 UNP 142 113 1 ALA conflict ARG 114 1J9M A P39042 UNP 143 114 1 HIS conflict ASP 156 1J9M A P39042 UNP 185 156 5 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 21 A THR 21 A LYS 25 A LYS 25 A GLY 10 A GLY 10 A ASN 15 A ASN 15 A LYS 233 A LYS 233 A SER 242 A SER 242 A LYS 221 A LYS 221 A ARG 230 A ARG 230 A ALA 209 A ALA 209 A GLY 217 A GLY 217 A ARG 31 A ARG 31 A SER 32 A SER 32 A TYR 151 A TYR 151 A SER 152 A SER 152 A LYS 56 A LYS 56 A THR 58 A THR 58 A LYS 82 A LYS 82 A THR 84 A THR 84 A ALA 178 A ALA 178 A TYR 179 A TYR 179 A TRP 196 A TRP 196 A LYS 197 A LYS 197 A LYS 182 A LYS 182 A VAL 184 A VAL 184 A ILE 190 A ILE 190 A THR 192 A THR 192 BINDING SITE FOR RESIDUE NA A 600 A NA 600 Software 6 BINDING SITE FOR RESIDUE CL A 601 A CL 601 Software 5 A SER 35 A SER 35 6 1_555 A SER 96 A SER 96 6 1_555 A LYS 213 A LYS 213 6 1_555 A THR 214 A THR 214 6 1_555 A GLY 215 A GLY 215 6 1_555 A CL 601 C CL 6 1_555 A LYS 186 A LYS 186 5 4_566 A GLY 215 A GLY 215 5 1_555 A SER 216 A SER 216 5 1_555 A ARG 248 A ARG 248 5 1_555 A NA 600 B NA 5 1_555 19 P 21 21 21