1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Phan Chan Du, A.
Limal, D.
Semetey, V.
Dali, H.
Jolivet, M.
Desgranges, C.
Cung, M.T.
Briand, J.P.
Petit, M.C.
Muller, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C3 H8 N2 O2
104.108
n
AMINOSERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
323
503
521
10.1016/S0022-2836(02)00701-5
12381305
Structural and immunological characterisation of heteroclitic peptide analogues corresponding to the 600-612 region of the HIV envelope gp41 glycoprotein.
2002
10.2210/pdb1jaa/pdb
pdb_00001jaa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
1388.589
DapE : (Ace)IWG(Dap)SGKLIETTA ANALOGUE OF HIV GP41
1
syn
polymer
no
yes
(ACE)IWG(SET)SGKLIETTA
XIWGSSGKLIETTA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
pdbx_validate_polymer_linkage
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Advisory
Data collection
Database references
Derived calculations
1
0
2003-07-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
the 1IM7 PDB entry contains the parent peptide.
the 1J8N PDB entry contains the beta3-Ser analogue peptide (HSER)
the 1J8Z PDB entry contains the beta3-Cys anlogue peptide (HCYS)
the 1J9V PDB entry contains the lactam analogue DabD.
RCSB
Y
RCSB
2001-05-30
REL
REL
The parent peptide (IWGCSGKLICTTA) occurs naturally in HIV gp41 glycoprotein
sample
The structure was determined using standard 2D homonuclear techniques. Different NOESY experiments , with mixing times from 80 ms to 800 ms , were recorded in order to determined the best conditions avoiding spin diffusion.
all calculated structures submitted
50
50
2D NOESY
DQF-COSY
TOCSY
ambiant
298
K
50 initial random structure were generatd in DYANA software , followed by 500 ps restrained minimization + 35 ps MD in vacuo at 300K, 200 ps under NMR restraints and 750ps conjugated gradient EM using the DISCOVER module of MSI software
Torsion angle dynamics, molecular dynamics, energy minimization.
1
lowest energy
3 mM peptide in 500 ul DMSO-D6
100% DMSO-D6
Bruker GMBH
collection
XwinNMR
2.6
Bruker GMBH
processing
XwinNMR
2.6
Bartels C., Xia T., Billeter M., Guentert P. and Wuethrich K. (1995) J. Biomol. NMR , 5, 1-10
data analysis
XEASY
1.2
Guentert P., Mumethaler C.and Wuethrich K. (1997) J. Mol. Biol., 273, 283-298
refinement
DYANA
1.5
Molecular Simulation Inc., san Diego
refinement
Discover
3
400
Bruker
AVANCE
600
Bruker
AVANCE
ACE
1
n
1
ACE
1
A
ILE
2
n
2
ILE
2
A
TRP
3
n
3
TRP
3
A
GLY
4
n
4
GLY
4
A
DNP
5
n
5
SET
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
LYS
8
n
8
LYS
8
A
LEU
9
n
9
LEU
9
A
ILE
10
n
10
ILE
10
A
GLU
11
n
11
GLU
11
A
THR
12
n
12
THR
12
A
THR
13
n
13
THR
13
A
ALA
14
n
14
ALA
14
A
author_defined_assembly
1
monomeric
A
SET
5
AMINOSERINE
A
SET
5
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O
SET
5
A
O
SET
5
1
Y
1
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
2
A
O
SET
5
A
O
SET
5
1
Y
2
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
3
A
O
SET
5
A
O
SET
5
1
Y
3
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
4
A
O
SET
5
A
O
SET
5
1
Y
4
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
5
A
O
SET
5
A
O
SET
5
1
Y
5
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
6
A
O
SET
5
A
O
SET
5
1
Y
6
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
7
A
O
SET
5
A
O
SET
5
1
Y
7
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
8
A
O
SET
5
A
O
SET
5
1
Y
8
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
9
A
O
SET
5
A
O
SET
5
1
Y
9
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
10
A
O
SET
5
A
O
SET
5
1
Y
10
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
11
A
O
SET
5
A
O
SET
5
1
Y
11
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
12
A
O
SET
5
A
O
SET
5
1
Y
12
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
13
A
O
SET
5
A
O
SET
5
1
Y
13
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
14
A
O
SET
5
A
O
SET
5
1
Y
14
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
15
A
O
SET
5
A
O
SET
5
1
Y
15
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
16
A
O
SET
5
A
O
SET
5
1
Y
16
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
17
A
O
SET
5
A
O
SET
5
1
Y
17
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
18
A
O
SET
5
A
O
SET
5
1
Y
18
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
19
A
O
SET
5
A
O
SET
5
1
Y
19
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
20
A
O
SET
5
A
O
SET
5
1
Y
20
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
21
A
O
SET
5
A
O
SET
5
1
Y
21
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
22
A
O
SET
5
A
O
SET
5
1
Y
22
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
23
A
O
SET
5
A
O
SET
5
1
Y
23
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
24
A
O
SET
5
A
O
SET
5
1
Y
24
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
25
A
O
SET
5
A
O
SET
5
1
Y
25
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
26
A
O
SET
5
A
O
SET
5
1
Y
26
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
27
A
O
SET
5
A
O
SET
5
1
Y
27
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
28
A
O
SET
5
A
O
SET
5
1
Y
28
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
29
A
O
SET
5
A
O
SET
5
1
Y
29
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
30
A
O
SET
5
A
O
SET
5
1
Y
30
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
31
A
O
SET
5
A
O
SET
5
1
Y
31
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
32
A
O
SET
5
A
O
SET
5
1
Y
32
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
33
A
O
SET
5
A
O
SET
5
1
Y
33
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
34
A
O
SET
5
A
O
SET
5
1
Y
34
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
35
A
O
SET
5
A
O
SET
5
1
Y
35
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
36
A
O
SET
5
A
O
SET
5
1
Y
36
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
37
A
O
SET
5
A
O
SET
5
1
Y
37
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
38
A
O
SET
5
A
O
SET
5
1
Y
38
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
39
A
O
SET
5
A
O
SET
5
1
Y
39
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
40
A
O
SET
5
A
O
SET
5
1
Y
40
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
41
A
O
SET
5
A
O
SET
5
1
Y
41
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
42
A
O
SET
5
A
O
SET
5
1
Y
42
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
43
A
O
SET
5
A
O
SET
5
1
Y
43
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
44
A
O
SET
5
A
O
SET
5
1
Y
44
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
45
A
O
SET
5
A
O
SET
5
1
Y
45
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
46
A
O
SET
5
A
O
SET
5
1
Y
46
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
47
A
O
SET
5
A
O
SET
5
1
Y
47
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
48
A
O
SET
5
A
O
SET
5
1
Y
48
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
49
A
O
SET
5
A
O
SET
5
1
Y
49
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
50
A
O
SET
5
A
O
SET
5
1
Y
50
A
OE2
GLU
11
A
OE2
GLU
11
1
Y
1
A
CA
SET
5
WRONG HAND
2
A
CA
SET
5
WRONG HAND
3
A
CA
SET
5
WRONG HAND
4
A
CA
SET
5
WRONG HAND
5
A
CA
SET
5
WRONG HAND
6
A
CA
SET
5
WRONG HAND
7
A
CA
SET
5
WRONG HAND
8
A
CA
SET
5
WRONG HAND
9
A
CA
SET
5
WRONG HAND
10
A
CA
SET
5
WRONG HAND
11
A
CA
SET
5
WRONG HAND
12
A
CA
SET
5
WRONG HAND
13
A
CA
SET
5
WRONG HAND
14
A
CA
SET
5
WRONG HAND
15
A
CA
SET
5
WRONG HAND
16
A
CA
SET
5
WRONG HAND
17
A
CA
SET
5
WRONG HAND
18
A
CA
SET
5
WRONG HAND
19
A
CA
SET
5
WRONG HAND
20
A
CA
SET
5
WRONG HAND
21
A
CA
SET
5
WRONG HAND
22
A
CA
SET
5
WRONG HAND
23
A
CA
SET
5
WRONG HAND
24
A
CA
SET
5
WRONG HAND
25
A
CA
SET
5
WRONG HAND
26
A
CA
SET
5
WRONG HAND
27
A
CA
SET
5
WRONG HAND
28
A
CA
SET
5
WRONG HAND
29
A
CA
SET
5
WRONG HAND
30
A
CA
SET
5
WRONG HAND
31
A
CA
SET
5
WRONG HAND
32
A
CA
SET
5
WRONG HAND
33
A
CA
SET
5
WRONG HAND
34
A
CA
SET
5
WRONG HAND
35
A
CA
SET
5
WRONG HAND
36
A
CA
SET
5
WRONG HAND
37
A
CA
SET
5
WRONG HAND
38
A
CA
SET
5
WRONG HAND
39
A
CA
SET
5
WRONG HAND
40
A
CA
SET
5
WRONG HAND
41
A
CA
SET
5
WRONG HAND
42
A
CA
SET
5
WRONG HAND
43
A
CA
SET
5
WRONG HAND
44
A
CA
SET
5
WRONG HAND
45
A
CA
SET
5
WRONG HAND
46
A
CA
SET
5
WRONG HAND
47
A
CA
SET
5
WRONG HAND
48
A
CA
SET
5
WRONG HAND
49
A
CA
SET
5
WRONG HAND
50
A
CA
SET
5
WRONG HAND
1
A
A
NT
CD
SET
GLU
5
11
1.34
2
A
A
NT
CD
SET
GLU
5
11
1.35
3
A
A
NT
CD
SET
GLU
5
11
1.35
4
A
A
NT
CD
SET
GLU
5
11
1.35
5
A
A
NT
CD
SET
GLU
5
11
1.35
6
A
A
NT
CD
SET
GLU
5
11
1.35
7
A
A
NT
CD
SET
GLU
5
11
1.35
8
A
A
NT
CD
SET
GLU
5
11
1.34
9
A
A
NT
CD
SET
GLU
5
11
1.35
10
A
A
NT
CD
SET
GLU
5
11
1.35
11
A
A
NT
CD
SET
GLU
5
11
1.35
12
A
A
NT
CD
SET
GLU
5
11
1.36
13
A
A
NT
CD
SET
GLU
5
11
1.36
14
A
A
NT
CD
SET
GLU
5
11
1.35
15
A
A
NT
CD
SET
GLU
5
11
1.36
16
A
A
NT
CD
SET
GLU
5
11
1.35
17
A
A
NT
CD
SET
GLU
5
11
1.35
18
A
A
NT
CD
SET
GLU
5
11
1.35
19
A
A
NT
CD
SET
GLU
5
11
1.34
20
A
A
NT
CD
SET
GLU
5
11
1.35
21
A
A
NT
CD
SET
GLU
5
11
1.35
22
A
A
NT
CD
SET
GLU
5
11
1.35
23
A
A
NT
CD
SET
GLU
5
11
1.35
24
A
A
NT
CD
SET
GLU
5
11
1.36
25
A
A
NT
CD
SET
GLU
5
11
1.36
26
A
A
NT
CD
SET
GLU
5
11
1.36
27
A
A
NT
CD
SET
GLU
5
11
1.36
28
A
A
NT
CD
SET
GLU
5
11
1.36
29
A
A
NT
CD
SET
GLU
5
11
1.34
30
A
A
NT
CD
SET
GLU
5
11
1.34
31
A
A
NT
CD
SET
GLU
5
11
1.34
32
A
A
NT
CD
SET
GLU
5
11
1.34
33
A
A
NT
CD
SET
GLU
5
11
1.34
34
A
A
NT
CD
SET
GLU
5
11
1.34
35
A
A
NT
CD
SET
GLU
5
11
1.34
36
A
A
NT
CD
SET
GLU
5
11
1.35
37
A
A
NT
CD
SET
GLU
5
11
1.35
38
A
A
NT
CD
SET
GLU
5
11
1.35
39
A
A
NT
CD
SET
GLU
5
11
1.35
40
A
A
NT
CD
SET
GLU
5
11
1.35
41
A
A
NT
CD
SET
GLU
5
11
1.35
42
A
A
NT
CD
SET
GLU
5
11
1.35
43
A
A
NT
CD
SET
GLU
5
11
1.36
44
A
A
NT
CD
SET
GLU
5
11
1.35
45
A
A
NT
CD
SET
GLU
5
11
1.34
46
A
A
NT
CD
SET
GLU
5
11
1.34
47
A
A
NT
CD
SET
GLU
5
11
1.34
48
A
A
NT
CD
SET
GLU
5
11
1.34
49
A
A
NT
CD
SET
GLU
5
11
1.35
50
A
A
NT
CD
SET
GLU
5
11
1.34
8
-5.45
0.90
109.00
103.55
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
3
3
3
N
1
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
2
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
3
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
4
A
A
C
OXT
ALA
ALA
14
14
0.143
0.019
1.229
1.372
N
5
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
6
A
A
C
OXT
ALA
ALA
14
14
0.142
0.019
1.229
1.371
N
7
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
8
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
9
A
A
C
OXT
ALA
ALA
14
14
0.143
0.019
1.229
1.372
N
10
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
11
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
12
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
13
A
A
C
OXT
ALA
ALA
14
14
0.140
0.019
1.229
1.369
N
14
A
A
C
OXT
ALA
ALA
14
14
0.142
0.019
1.229
1.371
N
15
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
16
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
17
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
18
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
19
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
20
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
21
A
A
C
OXT
ALA
ALA
14
14
0.140
0.019
1.229
1.369
N
22
A
A
C
OXT
ALA
ALA
14
14
0.146
0.019
1.229
1.375
N
23
A
A
C
OXT
ALA
ALA
14
14
0.143
0.019
1.229
1.372
N
24
A
A
C
OXT
ALA
ALA
14
14
0.143
0.019
1.229
1.372
N
25
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
26
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
27
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
28
A
A
C
OXT
ALA
ALA
14
14
0.146
0.019
1.229
1.375
N
29
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
30
A
A
C
OXT
ALA
ALA
14
14
0.140
0.019
1.229
1.369
N
31
A
A
C
OXT
ALA
ALA
14
14
0.142
0.019
1.229
1.371
N
32
A
A
C
OXT
ALA
ALA
14
14
0.142
0.019
1.229
1.371
N
33
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
34
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
35
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
36
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
37
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
38
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
39
A
A
C
OXT
ALA
ALA
14
14
0.144
0.019
1.229
1.373
N
40
A
A
C
OXT
ALA
ALA
14
14
0.141
0.019
1.229
1.370
N
41
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
42
A
A
C
OXT
ALA
ALA
14
14
0.146
0.019
1.229
1.375
N
43
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
44
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
45
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
46
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
47
A
A
C
OXT
ALA
ALA
14
14
0.146
0.019
1.229
1.375
N
48
A
A
C
OXT
ALA
ALA
14
14
0.145
0.019
1.229
1.374
N
49
A
A
C
OXT
ALA
ALA
14
14
0.146
0.019
1.229
1.375
N
50
A
A
C
OXT
ALA
ALA
14
14
0.143
0.019
1.229
1.372
N
1
A
ILE
10
-161.50
81.58
1
A
THR
13
-125.62
-66.52
2
A
TRP
3
-151.72
64.87
2
A
ILE
10
-156.87
73.99
2
A
GLU
11
-153.82
55.78
2
A
THR
13
-136.82
-77.25
3
A
ILE
10
-150.38
81.33
3
A
GLU
11
-150.71
72.71
4
A
ILE
10
-156.91
83.72
4
A
THR
13
-143.20
-76.95
5
A
ILE
10
-151.94
80.74
5
A
GLU
11
-148.51
52.66
5
A
THR
13
-133.19
-84.46
6
A
ILE
10
-151.32
76.79
6
A
THR
13
-148.37
-74.53
7
A
GLU
11
-157.35
61.76
7
A
THR
13
-135.11
-72.04
8
A
ILE
10
-153.05
79.85
8
A
THR
13
-136.56
-76.05
9
A
ILE
10
-151.29
81.31
10
A
GLU
11
-155.26
67.44
11
A
GLU
11
-141.55
36.05
11
A
THR
12
-157.43
74.99
11
A
THR
13
-139.06
-74.12
12
A
GLU
11
-101.17
41.13
12
A
THR
12
-148.11
-73.73
14
A
ILE
10
-118.05
60.31
14
A
GLU
11
-119.00
58.55
14
A
THR
12
-139.80
-77.85
15
A
GLU
11
-102.25
58.88
15
A
THR
12
-148.23
-72.09
16
A
GLU
11
-113.49
55.48
16
A
THR
12
-151.20
-76.05
17
A
GLU
11
-117.44
67.35
17
A
THR
12
-96.17
-73.46
18
A
ILE
10
-117.34
62.29
18
A
GLU
11
-112.01
53.96
18
A
THR
12
-148.48
-75.69
19
A
TRP
3
-110.17
71.10
20
A
TRP
3
-119.24
58.50
20
A
ILE
10
-117.46
70.80
20
A
GLU
11
-114.60
70.69
20
A
THR
12
-98.23
-66.70
21
A
GLU
11
-113.20
53.35
21
A
THR
12
-148.61
-75.98
22
A
TRP
3
-116.38
73.09
22
A
ILE
10
-110.14
76.05
22
A
GLU
11
-101.41
69.74
23
A
TRP
3
-155.67
78.21
23
A
THR
12
-77.50
-70.75
23
A
THR
13
-110.11
71.91
24
A
THR
12
-138.70
-76.51
25
A
GLU
11
-101.93
67.92
25
A
THR
12
-137.08
-81.86
25
A
THR
13
-109.41
-69.01
26
A
THR
12
-134.82
-82.84
26
A
THR
13
-128.94
-56.20
27
A
THR
12
-141.40
-80.72
27
A
THR
13
-95.18
-61.14
28
A
THR
12
-138.40
-81.50
32
A
ILE
10
-156.91
75.37
33
A
ILE
10
-90.55
43.09
33
A
THR
12
-108.84
-78.45
33
A
THR
13
-124.18
-79.31
34
A
THR
12
-131.91
-77.48
34
A
THR
13
-113.34
-80.21
35
A
THR
12
-134.97
-76.88
35
A
THR
13
-119.56
-80.36
36
A
GLU
11
-89.26
46.44
36
A
THR
12
-148.88
-73.74
37
A
GLU
11
-97.83
55.96
37
A
THR
12
-151.19
-70.88
38
A
ILE
10
-107.23
78.61
38
A
GLU
11
-103.91
65.16
38
A
THR
12
-143.49
-78.13
39
A
ILE
10
-110.75
75.26
39
A
GLU
11
-94.96
59.35
39
A
THR
12
-149.88
-82.98
40
A
THR
12
-145.96
-74.35
41
A
THR
12
-126.88
-78.32
42
A
TRP
3
-119.86
72.02
42
A
THR
12
-108.41
-79.06
43
A
THR
12
-87.02
-81.85
44
A
ILE
10
-167.95
71.71
44
A
THR
12
-157.57
-78.14
45
A
ILE
10
-101.42
74.84
45
A
THR
12
-135.88
-86.18
46
A
ILE
10
-155.21
65.43
46
A
THR
12
-142.71
-84.31
47
A
ILE
10
-167.63
73.56
47
A
THR
12
-143.99
-86.29
48
A
ILE
10
-155.73
65.94
48
A
THR
12
-141.93
-83.80
49
A
ILE
10
-161.51
75.75
50
A
ILE
10
-151.56
73.27
Solution structure of lactam analogue (DapE) of HIV gp41 600-612 loop.
1
N
N
covale
1.337
both
A
ACE
1
A
C
ACE
1
1_555
A
ILE
2
A
N
ILE
2
1_555
covale
1.347
both
A
GLY
4
A
C
GLY
4
1_555
A
SET
5
A
N
SET
5
1_555
covale
1.350
one
A
SET
5
A
CB
SET
5
1_555
A
SER
6
A
N
SER
6
1_555
VIRAL PROTEIN
lactam bond, cyclic peptide, peptidomimetics, gp41, HIV, Viral protein
ENV_HV1BN
UNP
1
591
P12488
IWGCSGKLICTTA
591
603
1JAA
2
14
P12488
A
1
2
14
1
acetylation
ACE
1
1JAA
A
P12488
UNP
1
1
CYS
engineered mutation
SET
5
1JAA
A
P12488
UNP
594
5
1
CYS
engineered mutation
GLU
11
1JAA
A
P12488
UNP
600
11
BINDING SITE FOR RESIDUE ACE A 1
A
ACE
1
Software
1
A
GLU
11
A
GLU
11
1
1_555