0.014249
0.008227
0.000000
0.000000
0.016453
0.000000
0.000000
0.000000
0.007883
0.00000
0.00000
0.00000
Archer, M.
Banci, L.
Dikaya, E.
Romao, M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
70.180
70.180
126.850
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
2
611
-1
Crystal Structure of Cytochrome C' from Rhodocyclus Gelatinosus and Comparison with Other Cytochromes C'
1997
US
Biochemistry
BICHAW
0033
0006-2960
32
776
One-and Two-Dimensional NMR Characterization of Oxidized and Reduced Cytochrome C' from Rhodocyclus Gelatinosus
1993
10.2210/pdb1jaf/pdb
pdb_00001jaf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
MARRESEARCH
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
BRUKER NONIUS
13303.056
CYTOCHROME C'
2
nat
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
2
syn
non-polymer
18.015
water
55
nat
water
no
no
QFQKPGDAIEYRQSAFTLIANHFGRVAAMAQGKAPFDAKVAAENIALVSTLSKLPLTAFGPGTDKGHGTEAKPAVWSDAA
GFKAAADKFAAAVDKLDAAGKTGDFAQIKAAVGETGGACKGCHDKFKEK
QFQKPGDAIEYRQSAFTLIANHFGRVAAMAQGKAPFDAKVAAENIALVSTLSKLPLTAFGPGTDKGHGTEAKPAVWSDAA
GFKAAADKFAAAVDKLDAAGKTGDFAQIKAAVGETGGACKGCHDKFKEK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rubrivivax
sample
28068
Rubrivivax gelatinosus
1
3.5
60.
6.
55% SATURATED (NH4)2SO4, 50 MM (NH4)2HPO4, 1 M NACL, pH 6.
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1998-01-21
1
1
2008-03-03
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-06-24
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
1CGO
CYTOCHROME C' FROM ALCALIGENES SP (PDB ENTRY 1CGO)
PDB
experimental model
HEM
129
2
HEM
HEM
130
A
HEM
129
2
HEM
HEM
130
B
HOH
201
3
HOH
HOH
201
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
215
3
HOH
HOH
215
A
HOH
219
3
HOH
HOH
219
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
227
3
HOH
HOH
227
A
HOH
229
3
HOH
HOH
229
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
244
3
HOH
HOH
244
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
202
3
HOH
HOH
202
B
HOH
205
3
HOH
HOH
205
B
HOH
206
3
HOH
HOH
206
B
HOH
207
3
HOH
HOH
207
B
HOH
208
3
HOH
HOH
208
B
HOH
209
3
HOH
HOH
209
B
HOH
213
3
HOH
HOH
213
B
HOH
214
3
HOH
HOH
214
B
HOH
216
3
HOH
HOH
216
B
HOH
217
3
HOH
HOH
217
B
HOH
218
3
HOH
HOH
218
B
HOH
220
3
HOH
HOH
220
B
HOH
221
3
HOH
HOH
221
B
HOH
222
3
HOH
HOH
222
B
HOH
225
3
HOH
HOH
225
B
HOH
226
3
HOH
HOH
226
B
HOH
228
3
HOH
HOH
228
B
HOH
230
3
HOH
HOH
230
B
HOH
234
3
HOH
HOH
234
B
HOH
238
3
HOH
HOH
238
B
HOH
239
3
HOH
HOH
239
B
HOH
240
3
HOH
HOH
240
B
HOH
243
3
HOH
HOH
243
B
HOH
245
3
HOH
HOH
245
B
HOH
251
3
HOH
HOH
251
B
HOH
252
3
HOH
HOH
252
B
HOH
255
3
HOH
HOH
255
B
GLN
1
n
1
GLN
1
A
PHE
2
n
2
PHE
2
A
GLN
3
n
3
GLN
3
A
LYS
4
n
4
LYS
4
A
PRO
5
n
5
PRO
5
A
GLY
6
n
6
GLY
6
A
ASP
7
n
7
ASP
7
A
ALA
8
n
8
ALA
8
A
ILE
9
n
9
ILE
9
A
GLU
10
n
10
GLU
10
A
TYR
11
n
11
TYR
11
A
ARG
12
n
12
ARG
12
A
GLN
13
n
13
GLN
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
PHE
16
n
16
PHE
16
A
THR
17
n
17
THR
17
A
LEU
18
n
18
LEU
18
A
ILE
19
n
19
ILE
19
A
ALA
20
n
20
ALA
20
A
ASN
21
n
21
ASN
21
A
HIS
22
n
22
HIS
22
A
PHE
23
n
23
PHE
23
A
GLY
24
n
24
GLY
24
A
ARG
25
n
25
ARG
25
A
VAL
26
n
26
VAL
26
A
ALA
27
n
27
ALA
27
A
ALA
28
n
28
ALA
28
A
MET
29
n
29
MET
29
A
ALA
30
n
30
ALA
30
A
GLN
31
n
31
GLN
31
A
GLY
32
n
32
GLY
32
A
LYS
33
n
33
LYS
33
A
ALA
34
n
34
ALA
34
A
PRO
35
n
35
PRO
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
ALA
38
n
38
ALA
38
A
LYS
39
n
39
LYS
39
A
VAL
40
n
40
VAL
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
GLU
43
n
43
GLU
43
A
ASN
44
n
44
ASN
44
A
ILE
45
n
45
ILE
45
A
ALA
46
n
46
ALA
46
A
LEU
47
n
47
LEU
47
A
VAL
48
n
48
VAL
48
A
SER
49
n
49
SER
49
A
THR
50
n
50
THR
50
A
LEU
51
n
51
LEU
51
A
SER
52
n
52
SER
52
A
LYS
53
n
53
LYS
53
A
LEU
54
n
54
LEU
54
A
PRO
55
n
55
PRO
55
A
LEU
56
n
56
LEU
56
A
THR
57
n
57
THR
57
A
ALA
58
n
58
ALA
58
A
PHE
59
n
59
PHE
59
A
GLY
60
n
60
GLY
60
A
PRO
61
n
61
PRO
61
A
GLY
62
n
62
GLY
62
A
THR
63
n
63
THR
63
A
ASP
64
n
64
ASP
64
A
LYS
65
n
65
LYS
65
A
GLY
66
n
66
GLY
66
A
HIS
67
n
67
HIS
67
A
GLY
68
n
68
GLY
68
A
THR
69
n
69
THR
69
A
GLU
70
n
70
GLU
70
A
ALA
71
n
71
ALA
71
A
LYS
72
n
72
LYS
72
A
PRO
73
n
73
PRO
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
TRP
76
n
76
TRP
76
A
SER
77
n
77
SER
77
A
ASP
78
n
78
ASP
78
A
ALA
79
n
79
ALA
79
A
ALA
80
n
80
ALA
80
A
GLY
81
n
81
GLY
81
A
PHE
82
n
82
PHE
82
A
LYS
83
n
83
LYS
83
A
ALA
84
n
84
ALA
84
A
ALA
85
n
85
ALA
85
A
ALA
86
n
86
ALA
86
A
ASP
87
n
87
ASP
87
A
LYS
88
n
88
LYS
88
A
PHE
89
n
89
PHE
89
A
ALA
90
n
90
ALA
90
A
ALA
91
n
91
ALA
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
ASP
94
n
94
ASP
94
A
LYS
95
n
95
LYS
95
A
LEU
96
n
96
LEU
96
A
ASP
97
n
97
ASP
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
GLY
100
n
100
GLY
100
A
LYS
101
n
101
LYS
101
A
THR
102
n
102
THR
102
A
GLY
103
n
103
GLY
103
A
ASP
104
n
104
ASP
104
A
PHE
105
n
105
PHE
105
A
ALA
106
n
106
ALA
106
A
GLN
107
n
107
GLN
107
A
ILE
108
n
108
ILE
108
A
LYS
109
n
109
LYS
109
A
ALA
110
n
110
ALA
110
A
ALA
111
n
111
ALA
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
GLU
114
n
114
GLU
114
A
THR
115
n
115
THR
115
A
GLY
116
n
116
GLY
116
A
GLY
117
n
117
GLY
117
A
ALA
118
n
118
ALA
118
A
CYS
119
n
119
CYS
119
A
LYS
120
n
120
LYS
120
A
GLY
121
n
121
GLY
121
A
CYS
122
n
122
CYS
122
A
HIS
123
n
123
HIS
123
A
ASP
124
n
124
ASP
124
A
LYS
125
n
125
LYS
125
A
PHE
126
n
126
PHE
126
A
LYS
127
n
127
LYS
127
A
GLU
128
n
128
GLU
128
A
n
129
129
A
GLN
1
n
1
GLN
1
B
PHE
2
n
2
PHE
2
B
GLN
3
n
3
GLN
3
B
LYS
4
n
4
LYS
4
B
PRO
5
n
5
PRO
5
B
GLY
6
n
6
GLY
6
B
ASP
7
n
7
ASP
7
B
ALA
8
n
8
ALA
8
B
ILE
9
n
9
ILE
9
B
GLU
10
n
10
GLU
10
B
TYR
11
n
11
TYR
11
B
ARG
12
n
12
ARG
12
B
GLN
13
n
13
GLN
13
B
SER
14
n
14
SER
14
B
ALA
15
n
15
ALA
15
B
PHE
16
n
16
PHE
16
B
THR
17
n
17
THR
17
B
LEU
18
n
18
LEU
18
B
ILE
19
n
19
ILE
19
B
ALA
20
n
20
ALA
20
B
ASN
21
n
21
ASN
21
B
HIS
22
n
22
HIS
22
B
PHE
23
n
23
PHE
23
B
GLY
24
n
24
GLY
24
B
ARG
25
n
25
ARG
25
B
VAL
26
n
26
VAL
26
B
ALA
27
n
27
ALA
27
B
ALA
28
n
28
ALA
28
B
MET
29
n
29
MET
29
B
ALA
30
n
30
ALA
30
B
GLN
31
n
31
GLN
31
B
GLY
32
n
32
GLY
32
B
LYS
33
n
33
LYS
33
B
ALA
34
n
34
ALA
34
B
PRO
35
n
35
PRO
35
B
PHE
36
n
36
PHE
36
B
ASP
37
n
37
ASP
37
B
ALA
38
n
38
ALA
38
B
LYS
39
n
39
LYS
39
B
VAL
40
n
40
VAL
40
B
ALA
41
n
41
ALA
41
B
ALA
42
n
42
ALA
42
B
GLU
43
n
43
GLU
43
B
ASN
44
n
44
ASN
44
B
ILE
45
n
45
ILE
45
B
ALA
46
n
46
ALA
46
B
LEU
47
n
47
LEU
47
B
VAL
48
n
48
VAL
48
B
SER
49
n
49
SER
49
B
THR
50
n
50
THR
50
B
LEU
51
n
51
LEU
51
B
SER
52
n
52
SER
52
B
LYS
53
n
53
LYS
53
B
LEU
54
n
54
LEU
54
B
PRO
55
n
55
PRO
55
B
LEU
56
n
56
LEU
56
B
THR
57
n
57
THR
57
B
ALA
58
n
58
ALA
58
B
PHE
59
n
59
PHE
59
B
GLY
60
n
60
GLY
60
B
PRO
61
n
61
PRO
61
B
GLY
62
n
62
GLY
62
B
THR
63
n
63
THR
63
B
ASP
64
n
64
ASP
64
B
LYS
65
n
65
LYS
65
B
GLY
66
n
66
GLY
66
B
HIS
67
n
67
HIS
67
B
GLY
68
n
68
GLY
68
B
THR
69
n
69
THR
69
B
GLU
70
n
70
GLU
70
B
ALA
71
n
71
ALA
71
B
LYS
72
n
72
LYS
72
B
PRO
73
n
73
PRO
73
B
ALA
74
n
74
ALA
74
B
VAL
75
n
75
VAL
75
B
TRP
76
n
76
TRP
76
B
SER
77
n
77
SER
77
B
ASP
78
n
78
ASP
78
B
ALA
79
n
79
ALA
79
B
ALA
80
n
80
ALA
80
B
GLY
81
n
81
GLY
81
B
PHE
82
n
82
PHE
82
B
LYS
83
n
83
LYS
83
B
ALA
84
n
84
ALA
84
B
ALA
85
n
85
ALA
85
B
ALA
86
n
86
ALA
86
B
ASP
87
n
87
ASP
87
B
LYS
88
n
88
LYS
88
B
PHE
89
n
89
PHE
89
B
ALA
90
n
90
ALA
90
B
ALA
91
n
91
ALA
91
B
ALA
92
n
92
ALA
92
B
VAL
93
n
93
VAL
93
B
ASP
94
n
94
ASP
94
B
LYS
95
n
95
LYS
95
B
LEU
96
n
96
LEU
96
B
ASP
97
n
97
ASP
97
B
ALA
98
n
98
ALA
98
B
ALA
99
n
99
ALA
99
B
GLY
100
n
100
GLY
100
B
LYS
101
n
101
LYS
101
B
THR
102
n
102
THR
102
B
GLY
103
n
103
GLY
103
B
ASP
104
n
104
ASP
104
B
PHE
105
n
105
PHE
105
B
ALA
106
n
106
ALA
106
B
GLN
107
n
107
GLN
107
B
ILE
108
n
108
ILE
108
B
LYS
109
n
109
LYS
109
B
ALA
110
n
110
ALA
110
B
ALA
111
n
111
ALA
111
B
VAL
112
n
112
VAL
112
B
GLY
113
n
113
GLY
113
B
GLU
114
n
114
GLU
114
B
THR
115
n
115
THR
115
B
GLY
116
n
116
GLY
116
B
GLY
117
n
117
GLY
117
B
ALA
118
n
118
ALA
118
B
CYS
119
n
119
CYS
119
B
LYS
120
n
120
LYS
120
B
GLY
121
n
121
GLY
121
B
CYS
122
n
122
CYS
122
B
HIS
123
n
123
HIS
123
B
ASP
124
n
124
ASP
124
B
LYS
125
n
125
LYS
125
B
PHE
126
n
126
PHE
126
B
LYS
127
n
127
LYS
127
B
GLU
128
n
128
GLU
128
B
n
129
129
B
author_defined_assembly
4
tetrameric
A
HIS
123
A
NE2
HIS
123
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
NA
HEM
1_555
97.8
A
HIS
123
A
NE2
HIS
123
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
NB
HEM
1_555
94.4
A
HEM
130
C
NA
HEM
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
NB
HEM
1_555
88.8
A
HIS
123
A
NE2
HIS
123
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
NC
HEM
1_555
96.5
A
HEM
130
C
NA
HEM
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
NC
HEM
1_555
165.7
A
HEM
130
C
NB
HEM
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
NC
HEM
1_555
89.5
A
HIS
123
A
NE2
HIS
123
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
ND
HEM
1_555
99.7
A
HEM
130
C
NA
HEM
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
ND
HEM
1_555
88.1
A
HEM
130
C
NB
HEM
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
ND
HEM
1_555
165.9
A
HEM
130
C
NC
HEM
1_555
A
HEM
130
C
FE
HEM
1_555
A
HEM
130
C
ND
HEM
1_555
90.1
B
HIS
123
B
NE2
HIS
123
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
NA
HEM
1_555
94.7
B
HIS
123
B
NE2
HIS
123
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
NB
HEM
1_555
99.0
B
HEM
130
D
NA
HEM
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
NB
HEM
1_555
90.9
B
HIS
123
B
NE2
HIS
123
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
NC
HEM
1_555
94.9
B
HEM
130
D
NA
HEM
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
NC
HEM
1_555
170.3
B
HEM
130
D
NB
HEM
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
NC
HEM
1_555
89.1
B
HIS
123
B
NE2
HIS
123
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
ND
HEM
1_555
92.7
B
HEM
130
D
NA
HEM
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
ND
HEM
1_555
89.6
B
HEM
130
D
NB
HEM
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
ND
HEM
1_555
168.2
B
HEM
130
D
NC
HEM
1_555
B
HEM
130
D
FE
HEM
1_555
B
HEM
130
D
ND
HEM
1_555
88.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_556
x-y,-y,-z+5/3
crystal symmetry operation
0.0000000000
0.0000000000
211.4166666667
1
A
CG
GLN
3
A
CG
GLN
3
1
Y
1
A
CD
GLN
3
A
CD
GLN
3
1
Y
1
A
OE1
GLN
3
A
OE1
GLN
3
1
Y
1
A
NE2
GLN
3
A
NE2
GLN
3
1
Y
1
A
CG
LYS
4
A
CG
LYS
4
1
Y
1
A
CD
LYS
4
A
CD
LYS
4
1
Y
1
A
CE
LYS
4
A
CE
LYS
4
1
Y
1
A
NZ
LYS
4
A
NZ
LYS
4
1
Y
1
A
CG
LYS
39
A
CG
LYS
39
1
Y
1
A
CD
LYS
39
A
CD
LYS
39
1
Y
1
A
CE
LYS
39
A
CE
LYS
39
1
Y
1
A
NZ
LYS
39
A
NZ
LYS
39
1
Y
1
A
CG
LYS
65
A
CG
LYS
65
1
Y
1
A
CD
LYS
65
A
CD
LYS
65
1
Y
1
A
CE
LYS
65
A
CE
LYS
65
1
Y
1
A
NZ
LYS
65
A
NZ
LYS
65
1
Y
1
A
CG
HIS
67
A
CG
HIS
67
1
Y
1
A
ND1
HIS
67
A
ND1
HIS
67
1
Y
1
A
CD2
HIS
67
A
CD2
HIS
67
1
Y
1
A
CE1
HIS
67
A
CE1
HIS
67
1
Y
1
A
NE2
HIS
67
A
NE2
HIS
67
1
Y
1
A
CG
LYS
83
A
CG
LYS
83
1
Y
1
A
CD
LYS
83
A
CD
LYS
83
1
Y
1
A
CE
LYS
83
A
CE
LYS
83
1
Y
1
A
NZ
LYS
83
A
NZ
LYS
83
1
Y
1
A
CG
LYS
88
A
CG
LYS
88
1
Y
1
A
CD
LYS
88
A
CD
LYS
88
1
Y
1
A
CE
LYS
88
A
CE
LYS
88
1
Y
1
A
NZ
LYS
88
A
NZ
LYS
88
1
Y
1
A
CG
LYS
120
A
CG
LYS
120
1
Y
1
A
CD
LYS
120
A
CD
LYS
120
1
Y
1
A
CE
LYS
120
A
CE
LYS
120
1
Y
1
A
NZ
LYS
120
A
NZ
LYS
120
1
Y
1
A
CG
LYS
125
A
CG
LYS
125
1
Y
1
A
CD
LYS
125
A
CD
LYS
125
1
Y
1
A
CE
LYS
125
A
CE
LYS
125
1
Y
1
A
NZ
LYS
125
A
NZ
LYS
125
1
Y
1
B
CG
GLN
3
B
CG
GLN
3
1
Y
1
B
CD
GLN
3
B
CD
GLN
3
1
Y
1
B
OE1
GLN
3
B
OE1
GLN
3
1
Y
1
B
NE2
GLN
3
B
NE2
GLN
3
1
Y
1
B
CG
LYS
4
B
CG
LYS
4
1
Y
1
B
CD
LYS
4
B
CD
LYS
4
1
Y
1
B
CE
LYS
4
B
CE
LYS
4
1
Y
1
B
NZ
LYS
4
B
NZ
LYS
4
1
Y
1
B
CG
LYS
39
B
CG
LYS
39
1
Y
1
B
CD
LYS
39
B
CD
LYS
39
1
Y
1
B
CE
LYS
39
B
CE
LYS
39
1
Y
1
B
NZ
LYS
39
B
NZ
LYS
39
1
Y
1
B
CG
LYS
65
B
CG
LYS
65
1
Y
1
B
CD
LYS
65
B
CD
LYS
65
1
Y
1
B
CE
LYS
65
B
CE
LYS
65
1
Y
1
B
NZ
LYS
65
B
NZ
LYS
65
1
Y
1
B
CG
HIS
67
B
CG
HIS
67
1
Y
1
B
ND1
HIS
67
B
ND1
HIS
67
1
Y
1
B
CD2
HIS
67
B
CD2
HIS
67
1
Y
1
B
CE1
HIS
67
B
CE1
HIS
67
1
Y
1
B
NE2
HIS
67
B
NE2
HIS
67
1
Y
1
B
CG
LYS
83
B
CG
LYS
83
1
Y
1
B
CD
LYS
83
B
CD
LYS
83
1
Y
1
B
CE
LYS
83
B
CE
LYS
83
1
Y
1
B
NZ
LYS
83
B
NZ
LYS
83
1
Y
1
B
CG
LYS
88
B
CG
LYS
88
1
Y
1
B
CD
LYS
88
B
CD
LYS
88
1
Y
1
B
CE
LYS
88
B
CE
LYS
88
1
Y
1
B
NZ
LYS
88
B
NZ
LYS
88
1
Y
1
B
CG
LYS
120
B
CG
LYS
120
1
Y
1
B
CD
LYS
120
B
CD
LYS
120
1
Y
1
B
CE
LYS
120
B
CE
LYS
120
1
Y
1
B
NZ
LYS
120
B
NZ
LYS
120
1
Y
1
B
CG
LYS
125
B
CG
LYS
125
1
Y
1
B
CD
LYS
125
B
CD
LYS
125
1
Y
1
B
CE
LYS
125
B
CE
LYS
125
1
Y
1
B
NZ
LYS
125
B
NZ
LYS
125
1
Y
1
A
LYS
129
A
LYS
129
1
Y
1
B
LYS
129
B
LYS
129
1
Y
1
A
A
O
O
HOH
HOH
210
210
1.19
1_555
5_556
1
A
ALA
58
-98.02
31.77
1
A
HIS
67
29.63
35.20
1
A
ASP
78
-107.49
54.28
1
B
HIS
67
32.88
30.46
1
B
ASP
78
-117.95
52.20
34.3
BULK SOLVENT CORRECTION USED (KSOL=0.33, SOLRAD=0.25 A, B=50 A**2).
0.2210000
0.1790000
0.1790000
2.5
27.4
988
12807
7.5
99.3
1
FREE R
2.
MOLECULAR REPLACEMENT
CYTOCHROME C' FROM ALCALIGENES SP (PDB ENTRY 1CGO)
2.5
27.4
56
1975
43
0
1876
0.009
1.403
19.33
1.327
1.5
2.0
2.0
2.5
0.3510000
0.3250000
2.59
112
1156
98.7
47.7
2.5
27.4
1JAF
13010
0.1100000
1
13.7
7.4
99.3
0.4280000
2.50
2.59
2.4
98.7
phasing
AMoRE
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF CYTOCHROME C' FROM RHODOCYCLUS GELATINOSUS AT 2.5 ANGSTOMS RESOLUTION
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
LYS
4
A
LYS
4
HELX_P
A
GLN
31
A
GLN
31
1
1
28
A
ASP
37
A
ASP
37
HELX_P
A
LEU
54
A
LEU
54
1
2
18
A
PRO
55
A
PRO
55
HELX_P
A
ALA
58
A
ALA
58
5
3
4
A
PRO
73
A
PRO
73
HELX_P
A
ASP
78
A
ASP
78
1
4
6
A
ASP
78
A
ASP
78
HELX_P
A
GLY
103
A
GLY
103
1
5
26
A
ASP
104
A
ASP
104
HELX_P
A
LYS
127
A
LYS
127
1
6
24
B
LYS
4
B
LYS
4
HELX_P
B
GLN
31
B
GLN
31
1
7
28
B
ASP
37
B
ASP
37
HELX_P
B
LEU
54
B
LEU
54
1
8
18
B
PRO
55
B
PRO
55
HELX_P
B
ALA
58
B
ALA
58
5
9
4
B
PRO
73
B
PRO
73
HELX_P
B
ASP
78
B
ASP
78
1
10
6
B
ASP
78
B
ASP
78
HELX_P
B
GLY
103
B
GLY
103
1
11
26
B
ASP
104
B
ASP
104
HELX_P
B
LYS
127
B
LYS
127
1
12
24
covale
1.797
none
A
CYS
119
A
SG
CYS
119
1_555
A
HEM
130
C
CAB
HEM
1_555
covale
1.762
none
A
CYS
122
A
SG
CYS
122
1_555
A
HEM
130
C
CAC
HEM
1_555
covale
1.798
none
B
CYS
119
B
SG
CYS
119
1_555
B
HEM
130
D
CAB
HEM
1_555
covale
1.766
none
B
CYS
122
B
SG
CYS
122
1_555
B
HEM
130
D
CAC
HEM
1_555
metalc
2.042
A
HIS
123
A
NE2
HIS
123
1_555
A
HEM
130
C
FE
HEM
1_555
metalc
1.903
B
HIS
123
B
NE2
HIS
123
1_555
B
HEM
130
D
FE
HEM
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, HEME PROTEIN, CYTOCHROME C'
CYCP_RHOGE
UNP
1
1
P00142
QFQKPGDAIEYRQSAFTLIANHFGRVAAMAQGKAPFDAKVAAENIALVSTLSKLPLTAFGPGTDKGHGTEAKPAVWSDAA
GFKAAADKFAAAVDKLDAAGKTGDFAQIKAAVGETGGACKGCHDKFKEK
1
129
1JAF
1
129
P00142
A
1
1
129
1
129
1JAF
1
129
P00142
B
1
1
129
BINDING SITE FOR RESIDUE HEM A 130
A
HEM
130
Software
16
BINDING SITE FOR RESIDUE HEM B 130
B
HEM
130
Software
14
A
ARG
12
A
ARG
12
16
1_555
A
GLN
13
A
GLN
13
16
1_555
A
PHE
16
A
PHE
16
16
1_555
A
THR
17
A
THR
17
16
1_555
A
THR
69
A
THR
69
16
1_555
A
GLU
70
A
GLU
70
16
1_555
A
PHE
82
A
PHE
82
16
1_555
A
ALA
86
A
ALA
86
16
1_555
A
PHE
89
A
PHE
89
16
1_555
A
ALA
118
A
ALA
118
16
1_555
A
CYS
119
A
CYS
119
16
1_555
A
CYS
122
A
CYS
122
16
1_555
A
HIS
123
A
HIS
123
16
1_555
A
LYS
127
A
LYS
127
16
1_555
A
HOH
231
E
HOH
16
1_555
A
HOH
244
E
HOH
16
1_555
B
ARG
12
B
ARG
12
14
1_555
B
GLN
13
B
GLN
13
14
1_555
B
PHE
16
B
PHE
16
14
1_555
B
THR
17
B
THR
17
14
1_555
B
THR
69
B
THR
69
14
1_555
B
GLU
70
B
GLU
70
14
1_555
B
ALA
86
B
ALA
86
14
1_555
B
PHE
89
B
PHE
89
14
1_555
B
CYS
119
B
CYS
119
14
1_555
B
CYS
122
B
CYS
122
14
1_555
B
HIS
123
B
HIS
123
14
1_555
B
PHE
126
B
PHE
126
14
1_555
B
LYS
127
B
LYS
127
14
1_555
B
HOH
214
F
HOH
14
1_555
152
P 31 2 1