1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Miura, T.
Klaus, W.
Ross, A.
Guentert, P.
Senn, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
22
89
92
10.1023/A:1013807519703
11885984
The NMR structure of the class I human ubiquitin-conjugating enzyme 2b
2002
10.2210/pdb1jas/pdb
pdb_00001jas
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
17328.283
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA
6.3.2.19
1
man
polymer
no
no
MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPN
VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPN
VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-09-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2001-05-31
REL
REL
target function
100
20
2D NOESY
3D_15N-separated_NOESY
3D_13C-separated_NOESY
4D_13C-separated_NOESY
6.7
ambient
308
K
CANDID: automated NOE cross
peak assignment
torsion angle dynamics
UL-13C, UL-15N; 75 mM ammonium acetate (deut.), 100 mM ammonium sulphate, pH 6.7
90% H2O/10% D2O
UL-13C, 75 mM ammonium acetate (deut.), 100 mM ammonium sulphate, pH 6.7
100% D2O
various
collection
XwinNMR
2.6
F. Delaglio
processing
NMRPipe
1.7
P. Guentert et al
structure solution
DYANA
1.65
P. Guentert et al
refinement
DYANA
1.65
600
Bruker
DMX
MET
1
n
1
MET
1
A
SER
2
n
2
SER
2
A
THR
3
n
3
THR
3
A
PRO
4
n
4
PRO
4
A
ALA
5
n
5
ALA
5
A
ARG
6
n
6
ARG
6
A
ARG
7
n
7
ARG
7
A
ARG
8
n
8
ARG
8
A
LEU
9
n
9
LEU
9
A
MET
10
n
10
MET
10
A
ARG
11
n
11
ARG
11
A
ASP
12
n
12
ASP
12
A
PHE
13
n
13
PHE
13
A
LYS
14
n
14
LYS
14
A
ARG
15
n
15
ARG
15
A
LEU
16
n
16
LEU
16
A
GLN
17
n
17
GLN
17
A
GLU
18
n
18
GLU
18
A
ASP
19
n
19
ASP
19
A
PRO
20
n
20
PRO
20
A
PRO
21
n
21
PRO
21
A
VAL
22
n
22
VAL
22
A
GLY
23
n
23
GLY
23
A
VAL
24
n
24
VAL
24
A
SER
25
n
25
SER
25
A
GLY
26
n
26
GLY
26
A
ALA
27
n
27
ALA
27
A
PRO
28
n
28
PRO
28
A
SER
29
n
29
SER
29
A
GLU
30
n
30
GLU
30
A
ASN
31
n
31
ASN
31
A
ASN
32
n
32
ASN
32
A
ILE
33
n
33
ILE
33
A
MET
34
n
34
MET
34
A
GLN
35
n
35
GLN
35
A
TRP
36
n
36
TRP
36
A
ASN
37
n
37
ASN
37
A
ALA
38
n
38
ALA
38
A
VAL
39
n
39
VAL
39
A
ILE
40
n
40
ILE
40
A
PHE
41
n
41
PHE
41
A
GLY
42
n
42
GLY
42
A
PRO
43
n
43
PRO
43
A
GLU
44
n
44
GLU
44
A
GLY
45
n
45
GLY
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
PHE
48
n
48
PHE
48
A
GLU
49
n
49
GLU
49
A
ASP
50
n
50
ASP
50
A
GLY
51
n
51
GLY
51
A
THR
52
n
52
THR
52
A
PHE
53
n
53
PHE
53
A
LYS
54
n
54
LYS
54
A
LEU
55
n
55
LEU
55
A
VAL
56
n
56
VAL
56
A
ILE
57
n
57
ILE
57
A
GLU
58
n
58
GLU
58
A
PHE
59
n
59
PHE
59
A
SER
60
n
60
SER
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
TYR
63
n
63
TYR
63
A
PRO
64
n
64
PRO
64
A
ASN
65
n
65
ASN
65
A
LYS
66
n
66
LYS
66
A
PRO
67
n
67
PRO
67
A
PRO
68
n
68
PRO
68
A
THR
69
n
69
THR
69
A
VAL
70
n
70
VAL
70
A
ARG
71
n
71
ARG
71
A
PHE
72
n
72
PHE
72
A
LEU
73
n
73
LEU
73
A
SER
74
n
74
SER
74
A
LYS
75
n
75
LYS
75
A
MET
76
n
76
MET
76
A
PHE
77
n
77
PHE
77
A
HIS
78
n
78
HIS
78
A
PRO
79
n
79
PRO
79
A
ASN
80
n
80
ASN
80
A
VAL
81
n
81
VAL
81
A
TYR
82
n
82
TYR
82
A
ALA
83
n
83
ALA
83
A
ASP
84
n
84
ASP
84
A
GLY
85
n
85
GLY
85
A
SER
86
n
86
SER
86
A
ILE
87
n
87
ILE
87
A
CYS
88
n
88
CYS
88
A
LEU
89
n
89
LEU
89
A
ASP
90
n
90
ASP
90
A
ILE
91
n
91
ILE
91
A
LEU
92
n
92
LEU
92
A
GLN
93
n
93
GLN
93
A
ASN
94
n
94
ASN
94
A
ARG
95
n
95
ARG
95
A
TRP
96
n
96
TRP
96
A
SER
97
n
97
SER
97
A
PRO
98
n
98
PRO
98
A
THR
99
n
99
THR
99
A
TYR
100
n
100
TYR
100
A
ASP
101
n
101
ASP
101
A
VAL
102
n
102
VAL
102
A
SER
103
n
103
SER
103
A
SER
104
n
104
SER
104
A
ILE
105
n
105
ILE
105
A
LEU
106
n
106
LEU
106
A
THR
107
n
107
THR
107
A
SER
108
n
108
SER
108
A
ILE
109
n
109
ILE
109
A
GLN
110
n
110
GLN
110
A
SER
111
n
111
SER
111
A
LEU
112
n
112
LEU
112
A
LEU
113
n
113
LEU
113
A
ASP
114
n
114
ASP
114
A
GLU
115
n
115
GLU
115
A
PRO
116
n
116
PRO
116
A
ASN
117
n
117
ASN
117
A
PRO
118
n
118
PRO
118
A
ASN
119
n
119
ASN
119
A
SER
120
n
120
SER
120
A
PRO
121
n
121
PRO
121
A
ALA
122
n
122
ALA
122
A
ASN
123
n
123
ASN
123
A
SER
124
n
124
SER
124
A
GLN
125
n
125
GLN
125
A
ALA
126
n
126
ALA
126
A
ALA
127
n
127
ALA
127
A
GLN
128
n
128
GLN
128
A
LEU
129
n
129
LEU
129
A
TYR
130
n
130
TYR
130
A
GLN
131
n
131
GLN
131
A
GLU
132
n
132
GLU
132
A
ASN
133
n
133
ASN
133
A
LYS
134
n
134
LYS
134
A
ARG
135
n
135
ARG
135
A
GLU
136
n
136
GLU
136
A
TYR
137
n
137
TYR
137
A
GLU
138
n
138
GLU
138
A
LYS
139
n
139
LYS
139
A
ARG
140
n
140
ARG
140
A
VAL
141
n
141
VAL
141
A
SER
142
n
142
SER
142
A
ALA
143
n
143
ALA
143
A
ILE
144
n
144
ILE
144
A
VAL
145
n
145
VAL
145
A
GLU
146
n
146
GLU
146
A
GLN
147
n
147
GLN
147
A
SER
148
n
148
SER
148
A
TRP
149
n
149
TRP
149
A
ASN
150
n
150
ASN
150
A
ASP
151
n
151
ASP
151
A
SER
152
n
152
SER
152
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
27
A
O
ALA
27
A
N
ASN
37
A
N
ASN
37
A
O
ILE
40
A
O
ILE
40
A
N
PHE
53
A
N
PHE
53
A
N
GLU
58
A
N
GLU
58
A
O
THR
69
A
O
THR
69
1
A
A
OD1
HG
ASP
SER
101
103
1.54
6
A
A
OD2
HG
ASP
SER
101
103
1.59
8
A
A
OD2
HH
ASP
TYR
12
63
1.59
11
A
A
O
HG
GLU
SER
138
142
1.60
12
A
A
HG1
OE2
THR
GLU
3
61
1.59
13
A
A
OD2
HH
ASP
TYR
12
63
1.60
17
A
A
O
HG
VAL
SER
145
148
1.59
6
A
A
ILE
CYS
87
88
149.52
17
A
A
PRO
THR
68
69
146.79
1
A
ARG
8
0.087
SIDE CHAIN
1
A
TYR
63
0.073
SIDE CHAIN
1
A
ARG
140
0.077
SIDE CHAIN
2
A
ARG
7
0.086
SIDE CHAIN
3
A
ARG
71
0.101
SIDE CHAIN
5
A
ARG
6
0.091
SIDE CHAIN
5
A
ARG
71
0.109
SIDE CHAIN
6
A
TYR
130
0.074
SIDE CHAIN
7
A
TYR
100
0.081
SIDE CHAIN
7
A
ARG
140
0.078
SIDE CHAIN
8
A
ARG
135
0.106
SIDE CHAIN
9
A
ARG
6
0.091
SIDE CHAIN
9
A
ARG
8
0.084
SIDE CHAIN
11
A
ARG
140
0.088
SIDE CHAIN
12
A
ARG
71
0.087
SIDE CHAIN
12
A
ARG
135
0.094
SIDE CHAIN
15
A
ARG
15
0.076
SIDE CHAIN
15
A
TYR
63
0.080
SIDE CHAIN
15
A
TYR
82
0.071
SIDE CHAIN
16
A
ARG
11
0.092
SIDE CHAIN
16
A
TYR
137
0.078
SIDE CHAIN
17
A
ARG
140
0.124
SIDE CHAIN
18
A
TYR
82
0.071
SIDE CHAIN
18
A
ARG
140
0.083
SIDE CHAIN
19
A
ARG
7
0.076
SIDE CHAIN
20
A
TYR
130
0.074
SIDE CHAIN
6
-9.62
1.60
110.90
101.28
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
56
56
56
N
6
-3.53
0.50
120.30
116.77
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
135
135
135
N
9
-3.75
0.60
121.00
117.25
A
A
A
CB
CG
CD1
TYR
TYR
TYR
63
63
63
N
11
-3.92
0.60
121.00
117.08
A
A
A
CB
CG
CD1
TYR
TYR
TYR
63
63
63
N
14
3.82
0.60
121.00
124.82
A
A
A
CB
CG
CD2
TYR
TYR
TYR
63
63
63
N
14
-5.94
0.60
121.00
115.06
A
A
A
CB
CG
CD1
TYR
TYR
TYR
63
63
63
N
19
-3.17
0.50
120.30
117.13
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
7
7
7
N
20
-3.35
0.50
120.30
116.95
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
11
11
11
N
20
3.12
0.50
120.30
123.42
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
95
95
95
N
1
A
SER
29
-55.36
170.59
1
A
GLN
93
-122.55
-145.30
1
A
GLU
132
-81.79
-90.09
1
A
ASN
133
-101.60
68.33
2
A
SER
2
-152.63
-68.81
2
A
GLU
62
-74.13
39.37
2
A
GLN
93
-123.68
-103.04
2
A
THR
99
-145.85
-40.07
2
A
GLU
132
-82.58
-89.94
2
A
ASN
133
-107.22
68.84
3
A
PRO
79
-68.76
1.38
3
A
GLN
93
-103.09
-148.98
3
A
PRO
98
-71.71
38.85
3
A
PRO
121
-89.55
48.27
3
A
GLU
132
-77.23
-74.04
3
A
ASN
133
-111.38
72.65
4
A
GLN
93
-96.13
-154.80
4
A
THR
99
-143.33
-27.09
4
A
GLU
132
-96.53
-89.27
5
A
SER
2
-151.87
29.85
5
A
GLU
62
-80.77
31.72
5
A
GLN
93
-111.78
-156.09
5
A
GLU
132
-78.39
-72.66
5
A
ASN
133
-111.28
68.94
6
A
GLN
93
-114.32
-120.23
6
A
THR
99
-136.94
-34.29
6
A
GLU
132
-96.49
-83.72
6
A
ASN
133
-110.05
77.03
7
A
GLU
62
-106.70
62.10
7
A
PRO
64
-78.35
22.48
7
A
GLN
93
-117.97
-106.85
7
A
PRO
98
-69.94
78.56
7
A
THR
99
-152.30
-45.89
7
A
GLU
132
-71.01
-73.57
7
A
ASN
133
-109.76
68.02
8
A
GLN
93
-107.02
-137.37
8
A
GLU
132
-88.48
-84.80
9
A
GLN
93
-113.17
-143.55
9
A
THR
99
-138.08
-30.86
9
A
GLU
132
-77.53
-79.61
9
A
ASN
133
-110.55
68.78
9
A
TRP
149
-73.88
23.13
10
A
GLN
93
-102.59
-146.93
10
A
GLU
132
-82.84
-96.46
11
A
GLN
93
-114.95
-150.54
11
A
THR
99
-128.39
-59.92
11
A
GLU
132
-81.63
-77.31
11
A
ASN
133
-109.62
78.40
12
A
GLN
93
-109.21
-137.85
12
A
THR
99
-139.06
-44.25
12
A
GLU
132
-89.66
-96.28
12
A
TRP
149
-68.92
13.64
13
A
GLN
93
-100.38
-147.05
13
A
PRO
98
-65.17
26.62
13
A
GLU
132
-76.48
-76.02
13
A
ASN
133
-109.58
68.75
14
A
GLN
93
-106.59
-123.00
14
A
GLU
132
-70.23
-75.81
14
A
ASN
133
-109.88
67.84
15
A
GLU
62
-83.27
32.04
15
A
GLN
93
-112.60
-93.75
15
A
ARG
95
-75.10
23.70
15
A
GLU
132
-84.00
-79.19
15
A
ASN
133
-110.27
69.29
16
A
ILE
33
-141.06
-19.46
16
A
GLU
62
-74.81
32.67
16
A
GLN
93
-96.34
-99.46
16
A
THR
99
-152.25
-42.64
16
A
GLU
132
-67.68
-84.76
16
A
ASN
133
-108.20
68.12
17
A
GLN
93
-108.55
-153.16
17
A
PRO
98
-78.65
41.47
17
A
GLU
132
-99.35
-88.69
18
A
SER
2
-162.36
-81.39
18
A
ILE
33
-142.11
-8.80
18
A
GLN
93
-118.73
-89.52
18
A
PRO
118
-68.97
5.07
18
A
GLU
132
-79.25
-82.57
18
A
ASP
151
-67.40
99.70
19
A
GLN
93
-89.29
-108.34
19
A
PRO
98
-69.51
4.67
19
A
GLU
132
-70.59
-73.64
19
A
ASN
133
-110.45
70.09
20
A
ASN
94
-69.50
4.67
20
A
GLU
132
-82.35
-92.14
20
A
ASN
133
-106.36
67.81
HsUbc2b
1
N
N
A
THR
3
A
THR
3
HELX_P
A
ASP
19
A
ASP
19
1
1
17
A
LEU
89
A
LEU
89
HELX_P
A
GLN
93
A
GLN
93
5
2
5
A
ASP
101
A
ASP
101
HELX_P
A
GLU
115
A
GLU
115
1
3
15
A
ASN
123
A
ASN
123
HELX_P
A
GLU
132
A
GLU
132
1
4
10
A
ASN
133
A
ASN
133
HELX_P
A
GLN
147
A
GLN
147
1
5
15
A
SER
148
A
SER
148
HELX_P
A
ASP
151
A
ASP
151
5
6
4
LIGASE
ubiquitin conjugation, ubiquitin conjugating enzyme, LIGASE
A
TYR
63
A
TYR
63
1
A
PRO
64
A
PRO
64
-12.57
A
TYR
63
A
TYR
63
2
A
PRO
64
A
PRO
64
-14.18
A
TYR
63
A
TYR
63
3
A
PRO
64
A
PRO
64
2.62
A
TYR
63
A
TYR
63
4
A
PRO
64
A
PRO
64
-3.75
A
TYR
63
A
TYR
63
5
A
PRO
64
A
PRO
64
-11.75
A
TYR
63
A
TYR
63
6
A
PRO
64
A
PRO
64
-12.59
A
TYR
63
A
TYR
63
7
A
PRO
64
A
PRO
64
-7.17
A
TYR
63
A
TYR
63
8
A
PRO
64
A
PRO
64
0.06
A
TYR
63
A
TYR
63
9
A
PRO
64
A
PRO
64
1.87
A
TYR
63
A
TYR
63
10
A
PRO
64
A
PRO
64
-10.55
A
TYR
63
A
TYR
63
11
A
PRO
64
A
PRO
64
-6.39
A
TYR
63
A
TYR
63
12
A
PRO
64
A
PRO
64
1.32
A
TYR
63
A
TYR
63
13
A
PRO
64
A
PRO
64
-13.91
A
TYR
63
A
TYR
63
14
A
PRO
64
A
PRO
64
-3.61
A
TYR
63
A
TYR
63
15
A
PRO
64
A
PRO
64
-7.36
A
TYR
63
A
TYR
63
16
A
PRO
64
A
PRO
64
-5.47
A
TYR
63
A
TYR
63
17
A
PRO
64
A
PRO
64
-2.02
A
TYR
63
A
TYR
63
18
A
PRO
64
A
PRO
64
-4.55
A
TYR
63
A
TYR
63
19
A
PRO
64
A
PRO
64
1.16
A
TYR
63
A
TYR
63
20
A
PRO
64
A
PRO
64
-8.01
UBE2B_HUMAN
UNP
1
1
P63146
MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPN
VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
1
152
1JAS
1
152
P63146
A
1
1
152
4
anti-parallel
anti-parallel
anti-parallel
A
VAL
24
A
VAL
24
A
PRO
28
A
PRO
28
A
GLN
35
A
GLN
35
A
PHE
41
A
PHE
41
A
THR
52
A
THR
52
A
GLU
58
A
GLU
58
A
THR
69
A
THR
69
A
PHE
72
A
PHE
72
1
P 1