1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nakamura, G.R.
Starovasnik, M.A.
Reynolds, M.E.
Lowman, H.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
40
9828
9835
10.1021/bi0109360
11502176
A novel family of hairpin peptides that inhibit IgE activity by binding to the high-affinity IgE receptor.
2001
10.2210/pdb1jbf/pdb
pdb_00001jbf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
1776.090
IGE06
1
syn
polymer
no
yes
(ACE)NLPRCTEGPWGWVCM
XNLPRCTEGPWGWVCM
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-08-22
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
RCSB
Y
RCSB
2001-06-04
REL
This peptide was chemically synthesized. It was based on naive phage-peptide library sorted for binding IgE receptor
sample
3JHNHa were obtained
by fitting Lorentzian lines to the antiphase
doublets of HN-Ha peaks in a 2QF-COSY spectrum
processed to high digital resolution in F2.
3JHNHa for Gly8 and Gly11
were obtained from analysis of the COSY-35
spectrum acquired in H2O. 3JHaHb were extracted
from a COSY-35 spectrum acquired in D2O.
structures with acceptable covalent geometry,structures with the least restraint violations
50
20
2D NOESY
DQF-COSY
2D TOCSY
2D COSY-35
2D ROESY
2D NOESY
2D COSY-35
no salt
5.7
ambient
288
K
Structures were calculated based on a total
of 109 distance and 16 dihedral angle restraints.
The final ensemble of 20 models has no distance
or dihedral angle restraint violations greater
than 0.1 angstrom or 2 degrees, respectively.
Hybrid distance geometry/simulated annealing
followed by restrained molecular dynamics.
1
closest to the average
2 mM IGE06
92% H2O/8% D2O, pH 5.7,
0.1 mM NaN3, 0.1 mM DSS
2 mM IGE06
100% D2O, pH 5.7, 0.1 mM NaN3,
0.1 mM DSS
Molecular Simulations, Inc.
data analysis
Felix
97.0
Bruker, Inc.
collection
UXNMR
Havel
structure solution
DGII
97.0
Molecular Simulations, Inc.
refinement
Discover
97.0
500
Bruker
AMX
ACE
0
n
1
ACE
0
A
ASN
1
n
2
ASN
1
A
LEU
2
n
3
LEU
2
A
PRO
3
n
4
PRO
3
A
ARG
4
n
5
ARG
4
A
CYS
5
n
6
CYS
5
A
THR
6
n
7
THR
6
A
GLU
7
n
8
GLU
7
A
GLY
8
n
9
GLY
8
A
PRO
9
n
10
PRO
9
A
TRP
10
n
11
TRP
10
A
GLY
11
n
12
GLY
11
A
TRP
12
n
13
TRP
12
A
VAL
13
n
14
VAL
13
A
CYS
14
n
15
CYS
14
A
MET
15
n
16
MET
15
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
8
A
N
GLY
9
A
O
GLY
11
A
O
GLY
12
1
A
TRP
10
-99.47
48.38
2
A
TRP
10
-99.44
47.05
3
A
PRO
3
-65.69
95.83
3
A
TRP
10
-99.51
47.82
4
A
TRP
10
-99.46
47.06
5
A
ARG
4
-108.01
-164.58
5
A
TRP
10
-99.59
49.60
6
A
TRP
10
-99.46
49.09
7
A
TRP
10
-99.59
32.02
7
A
TRP
12
-66.50
94.30
8
A
TRP
10
-99.44
54.19
9
A
TRP
10
-99.56
34.24
9
A
TRP
12
-65.98
97.46
10
A
PRO
3
-54.63
98.11
10
A
TRP
12
-66.01
90.13
11
A
TRP
10
-99.46
47.57
12
A
TRP
10
-99.51
35.99
13
A
PRO
3
-58.31
84.32
13
A
TRP
10
-99.60
30.21
13
A
TRP
12
-66.33
95.25
14
A
TRP
10
-99.55
41.72
15
A
TRP
10
-99.60
33.34
15
A
TRP
12
-66.59
94.44
16
A
TRP
10
-99.57
34.46
17
A
PRO
3
-52.67
107.01
17
A
TRP
10
-99.63
42.53
18
A
TRP
10
-99.41
53.74
19
A
PRO
3
-40.51
102.68
19
A
TRP
12
-65.20
92.25
20
A
PRO
3
-45.33
93.10
20
A
TRP
10
-99.60
38.03
Hairpin Peptide that Inhibits IgE Activity by Binding to the High Affinity IgE Receptor
1
N
N
disulf
2.056
A
CYS
5
A
SG
CYS
6
1_555
A
CYS
14
A
SG
CYS
15
1_555
covale
1.338
both
A
ACE
0
A
C
ACE
1
1_555
A
ASN
1
A
N
ASN
2
1_555
PROTEIN BINDING
beta-hairpin, type I turn, PROTEIN BINDING
1JBF
PDB
1
1JBF
0
15
1JBF
0
15
1JBF
A
1
1
16
2
anti-parallel
A
CYS
5
A
CYS
6
A
GLY
8
A
GLY
9
A
GLY
11
A
GLY
12
A
CYS
14
A
CYS
15