1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liepinsh, E. Trexler, M. Kaikkonen, A. Weigelt, J. Banyai, L. Patthy, L. Otting, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK EMBO J. EMJODG 0897 0261-4189 20 5347 5353 10.1093/emboj/20.19.5347 11574466 NMR structure of the LCCL domain and implications for DFNA9 deafness disorder. 2001 10.2210/pdb1jbi/pdb pdb_00001jbi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 10609.979 cochlin LCCL module 1 man polymer COCH-5B2 no no TAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGRENYSSVDA NGIQSQMLSRWSASFTVTLE TAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGRENYSSVDA NGIQSQMLSRWSASFTVTLE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample M13mp18 9606 Homo sapiens 562 Escherichia coli JM 109 plasmid pmed23 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-10-17 1 1 2007-10-21 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details RCSB Y RCSB 2001-06-05 REL This structure was determined using standard 2D homonuclear techniques structures with the lowest energy,target function 50 20 2D NOESY,2D ROESY, 2D DQF-COSY,2D TOCSY 3D-15N-separated-NOESY,3D-15N-separated-TOCSY, 1H-15N-HSQC 0.1 4.9 ambient 301 K 0.1 4.9 ambient 301 K the structures are based on a total of 2532 restraints, 1193 are NOE-derived distance constraints, 270 dihedral angle restraints and 69 residual dipolar coupling restraints torsion angle dynamics,simulated annealing 15 closest to the average 1mM LCCL; 90% H2O, 10% D2O 90% H2O/10% D2O 3mg/ml LCCL U-15N; 90% H2O, 10% D2O 90% H2O/10% D2O Bruker collection XwinNMR 2.5 Guntert processing PROSA 3.4 Guntert data analysis XEASY 2.6 Guntert structure solution DYANA 1.5 Luginbuhl refinement OPAL 2.2 600 Bruker DMX 800 Varian UNITY THR 1 n 1 THR 1 A ALA 2 n 2 ALA 2 A PRO 3 n 3 PRO 3 A ILE 4 n 4 ILE 4 A ALA 5 n 5 ALA 5 A ILE 6 n 6 ILE 6 A THR 7 n 7 THR 7 A CYS 8 n 8 CYS 8 A PHE 9 n 9 PHE 9 A THR 10 n 10 THR 10 A ARG 11 n 11 ARG 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ASP 14 n 14 ASP 14 A ILE 15 n 15 ILE 15 A ARG 16 n 16 ARG 16 A LYS 17 n 17 LYS 17 A GLU 18 n 18 GLU 18 A LYS 19 n 19 LYS 19 A ALA 20 n 20 ALA 20 A ASP 21 n 21 ASP 21 A VAL 22 n 22 VAL 22 A LEU 23 n 23 LEU 23 A CYS 24 n 24 CYS 24 A PRO 25 n 25 PRO 25 A GLY 26 n 26 GLY 26 A GLY 27 n 27 GLY 27 A CYS 28 n 28 CYS 28 A PRO 29 n 29 PRO 29 A LEU 30 n 30 LEU 30 A GLU 31 n 31 GLU 31 A GLU 32 n 32 GLU 32 A PHE 33 n 33 PHE 33 A SER 34 n 34 SER 34 A VAL 35 n 35 VAL 35 A TYR 36 n 36 TYR 36 A GLY 37 n 37 GLY 37 A ASN 38 n 38 ASN 38 A ILE 39 n 39 ILE 39 A VAL 40 n 40 VAL 40 A TYR 41 n 41 TYR 41 A ALA 42 n 42 ALA 42 A SER 43 n 43 SER 43 A VAL 44 n 44 VAL 44 A SER 45 n 45 SER 45 A SER 46 n 46 SER 46 A ILE 47 n 47 ILE 47 A CYS 48 n 48 CYS 48 A GLY 49 n 49 GLY 49 A ALA 50 n 50 ALA 50 A ALA 51 n 51 ALA 51 A VAL 52 n 52 VAL 52 A HIS 53 n 53 HIS 53 A ARG 54 n 54 ARG 54 A GLY 55 n 55 GLY 55 A VAL 56 n 56 VAL 56 A ILE 57 n 57 ILE 57 A SER 58 n 58 SER 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A GLY 61 n 61 GLY 61 A GLY 62 n 62 GLY 62 A PRO 63 n 63 PRO 63 A VAL 64 n 64 VAL 64 A ARG 65 n 65 ARG 65 A VAL 66 n 66 VAL 66 A TYR 67 n 67 TYR 67 A SER 68 n 68 SER 68 A LEU 69 n 69 LEU 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A ARG 72 n 72 ARG 72 A GLU 73 n 73 GLU 73 A ASN 74 n 74 ASN 74 A TYR 75 n 75 TYR 75 A SER 76 n 76 SER 76 A SER 77 n 77 SER 77 A VAL 78 n 78 VAL 78 A ASP 79 n 79 ASP 79 A ALA 80 n 80 ALA 80 A ASN 81 n 81 ASN 81 A GLY 82 n 82 GLY 82 A ILE 83 n 83 ILE 83 A GLN 84 n 84 GLN 84 A SER 85 n 85 SER 85 A GLN 86 n 86 GLN 86 A MET 87 n 87 MET 87 A LEU 88 n 88 LEU 88 A SER 89 n 89 SER 89 A ARG 90 n 90 ARG 90 A TRP 91 n 91 TRP 91 A SER 92 n 92 SER 92 A ALA 93 n 93 ALA 93 A SER 94 n 94 SER 94 A PHE 95 n 95 PHE 95 A THR 96 n 96 THR 96 A VAL 97 n 97 VAL 97 A THR 98 n 98 THR 98 A LEU 99 n 99 LEU 99 A GLU 100 n 100 GLU 100 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 4 A N ILE 4 A O ASP 21 A O ASP 21 A O CYS 24 A O CYS 24 A N GLY 62 A N GLY 62 A N LEU 69 A N LEU 69 A O SER 94 A O SER 94 A O PHE 95 A O PHE 95 A N TYR 41 A N TYR 41 A N VAL 35 A N VAL 35 A O GLN 84 A O GLN 84 A N SER 85 A N SER 85 A O VAL 78 A O VAL 78 4 A A THR ALA 1 2 -65.98 19 A A THR ALA 1 2 -139.20 1 A TYR 41 0.075 SIDE CHAIN 1 A ARG 65 0.131 SIDE CHAIN 1 A TYR 67 0.079 SIDE CHAIN 2 A ARG 72 0.102 SIDE CHAIN 3 A TYR 36 0.077 SIDE CHAIN 3 A ARG 72 0.118 SIDE CHAIN 5 A ARG 72 0.089 SIDE CHAIN 6 A TYR 41 0.082 SIDE CHAIN 6 A TYR 67 0.071 SIDE CHAIN 6 A ARG 90 0.090 SIDE CHAIN 8 A ARG 54 0.092 SIDE CHAIN 9 A ARG 16 0.086 SIDE CHAIN 9 A TYR 41 0.072 SIDE CHAIN 10 A TYR 41 0.077 SIDE CHAIN 10 A TYR 67 0.066 SIDE CHAIN 11 A ARG 16 0.104 SIDE CHAIN 11 A TYR 41 0.070 SIDE CHAIN 12 A TYR 75 0.084 SIDE CHAIN 12 A ARG 90 0.076 SIDE CHAIN 13 A ARG 90 0.155 SIDE CHAIN 14 A ARG 54 0.155 SIDE CHAIN 14 A ARG 72 0.080 SIDE CHAIN 15 A ARG 16 0.117 SIDE CHAIN 15 A ARG 72 0.107 SIDE CHAIN 16 A ARG 16 0.081 SIDE CHAIN 16 A TYR 41 0.099 SIDE CHAIN 18 A ARG 72 0.099 SIDE CHAIN 19 A TYR 36 0.073 SIDE CHAIN 20 A TYR 41 0.107 SIDE CHAIN 20 A ARG 90 0.151 SIDE CHAIN 1 -3.03 0.50 120.30 117.27 A A A NE CZ NH2 ARG ARG ARG 90 90 90 N 5 -3.52 0.50 120.30 116.78 A A A NE CZ NH2 ARG ARG ARG 65 65 65 N 8 -3.16 0.50 120.30 117.14 A A A NE CZ NH2 ARG ARG ARG 54 54 54 N 9 -3.02 0.50 120.30 117.28 A A A NE CZ NH2 ARG ARG ARG 72 72 72 N 14 -3.40 0.50 120.30 116.90 A A A NE CZ NH2 ARG ARG ARG 65 65 65 N 19 -4.04 0.60 121.00 116.96 A A A CB CG CD1 TYR TYR TYR 67 67 67 N 1 A CYS 8 54.33 13.37 1 A CYS 28 41.15 75.51 1 A LEU 30 -69.52 63.95 1 A ILE 39 63.36 -67.02 1 A SER 60 -145.86 -13.00 1 A ARG 90 61.28 62.08 1 A SER 92 -78.82 35.50 2 A CYS 8 51.24 13.70 2 A CYS 28 41.05 70.33 2 A ILE 39 62.03 -64.12 2 A SER 60 -146.84 -14.32 2 A ARG 90 65.07 62.28 2 A SER 92 -78.78 33.96 2 A ALA 93 -165.91 115.35 3 A ALA 2 -179.99 98.89 3 A THR 7 -102.21 46.27 3 A CYS 8 51.21 13.00 3 A CYS 28 32.35 70.49 3 A ILE 39 63.64 -60.84 3 A SER 60 -147.09 -13.46 3 A ARG 90 60.09 61.86 3 A SER 92 -78.91 33.79 3 A ALA 93 -161.92 112.50 4 A CYS 8 56.51 13.45 4 A ALA 20 -175.86 147.39 4 A CYS 28 28.19 70.76 4 A ILE 39 61.39 -65.59 4 A SER 60 -146.86 -66.07 4 A PRO 70 -68.18 -179.35 4 A SER 92 -80.50 33.81 5 A CYS 8 51.82 13.23 5 A CYS 28 40.79 71.89 5 A ILE 39 62.44 -66.97 5 A ASN 59 -65.90 73.47 5 A SER 60 -147.20 -13.80 5 A PRO 70 -59.70 171.11 5 A SER 89 -100.47 79.32 5 A SER 92 -78.91 33.79 5 A ALA 93 -161.96 108.68 6 A CYS 8 49.82 13.68 6 A ARG 16 -119.89 64.42 6 A CYS 28 42.08 76.63 6 A ILE 39 63.90 -61.29 6 A ASN 59 -64.03 74.35 6 A SER 60 -146.72 -21.27 6 A SER 92 -78.73 33.39 6 A ALA 93 -160.27 95.44 7 A PRO 3 -64.99 -179.79 7 A CYS 8 57.85 13.32 7 A CYS 28 40.87 76.09 7 A GLU 31 -96.37 -69.49 7 A ILE 39 59.44 -69.05 7 A SER 60 -146.36 -13.59 7 A ARG 90 61.85 62.11 7 A SER 92 -78.67 33.78 8 A THR 7 -84.21 34.15 8 A CYS 8 46.28 12.69 8 A CYS 28 41.45 76.56 8 A ILE 39 63.62 -64.42 8 A ASN 59 -63.90 72.79 8 A SER 60 -147.51 -13.91 8 A ARG 90 61.91 61.91 8 A SER 92 -79.22 33.74 9 A PRO 3 -69.85 -178.38 9 A CYS 8 49.22 12.82 9 A CYS 28 40.74 76.16 9 A PRO 29 -69.71 -173.94 9 A ILE 39 64.65 -63.08 9 A SER 60 -147.31 -13.51 9 A PRO 70 -58.19 171.12 9 A ARG 90 64.02 62.38 9 A SER 92 -80.24 33.35 9 A ALA 93 -166.53 110.13 10 A CYS 28 41.67 76.36 10 A GLU 31 -97.54 -63.70 10 A ILE 39 58.64 -75.66 10 A ASN 59 -68.33 73.09 10 A SER 60 -146.99 -13.40 10 A SER 92 -78.78 33.69 11 A ALA 2 178.18 156.32 11 A CYS 28 41.67 76.25 11 A GLU 31 -96.55 -60.81 11 A ILE 39 62.52 -67.35 11 A SER 60 -146.69 -13.27 11 A ASN 81 48.51 24.17 11 A ARG 90 61.13 61.90 11 A SER 92 -78.53 34.12 12 A CYS 8 47.96 13.27 12 A CYS 28 40.02 76.45 12 A ILE 39 62.70 -61.23 12 A SER 60 -146.66 -65.51 12 A PRO 70 -64.99 -177.24 12 A SER 92 -90.17 33.01 12 A ALA 93 -165.90 102.87 13 A CYS 8 41.02 12.91 13 A CYS 28 41.12 75.96 13 A LEU 30 -69.90 64.90 13 A GLU 31 -96.24 -75.64 13 A ILE 39 63.51 -59.94 13 A SER 60 -146.76 -13.45 13 A PRO 70 -63.87 -178.37 13 A ARG 90 62.15 62.24 13 A SER 92 -79.20 33.20 13 A ALA 93 -166.52 116.20 14 A CYS 8 54.18 16.24 14 A CYS 28 29.01 75.72 14 A GLU 32 -150.11 88.65 14 A ILE 39 62.11 -63.09 14 A SER 60 -147.05 -13.59 14 A SER 92 -78.42 33.31 15 A ALA 2 173.97 136.53 15 A CYS 8 58.06 16.26 15 A CYS 28 41.57 76.03 15 A ILE 39 62.44 -61.78 15 A SER 60 -147.07 -14.32 15 A SER 89 -111.09 77.51 15 A ARG 90 66.49 61.86 15 A SER 92 -78.91 34.11 15 A ALA 93 -164.02 110.74 16 A PRO 3 -67.43 -173.61 16 A CYS 28 41.22 76.03 16 A GLU 31 -96.73 -70.51 16 A ILE 39 62.51 -55.32 16 A ASN 59 -63.69 73.25 16 A SER 60 -146.82 -29.24 16 A ARG 90 62.86 62.26 16 A SER 92 -80.08 33.94 16 A ALA 93 -164.24 114.83 17 A CYS 8 56.69 19.39 17 A THR 10 -29.59 118.54 17 A CYS 24 -111.11 79.83 17 A CYS 28 41.33 76.37 17 A GLU 31 -87.35 -75.83 17 A ILE 39 59.91 -62.40 17 A SER 60 -147.23 -13.62 17 A ARG 90 66.36 61.85 17 A SER 92 -78.70 33.67 17 A ALA 93 -164.28 106.12 18 A CYS 8 55.98 13.26 18 A ARG 16 -108.94 65.99 18 A CYS 28 30.76 68.82 18 A ILE 39 61.88 -65.11 18 A SER 60 -146.92 -16.53 18 A SER 92 -78.63 33.60 19 A CYS 8 48.25 12.95 19 A CYS 28 37.60 76.03 19 A ILE 39 62.46 -62.05 19 A SER 60 -146.79 -13.60 19 A PRO 70 -58.37 174.29 19 A SER 92 -81.59 33.45 19 A ALA 93 -165.70 101.25 20 A ARG 16 -99.37 35.52 20 A CYS 28 41.15 75.13 20 A GLU 31 -96.53 -66.30 20 A ILE 39 64.56 -59.08 20 A SER 60 -147.14 -13.86 20 A SER 89 -106.13 76.81 20 A SER 92 -80.23 33.94 NMR structure of the LCCL domain 1 N N A SER 46 A SER 46 HELX_P A GLY 55 A GLY 55 1 1 10 disulf 2.039 A CYS 8 A SG CYS 8 1_555 A CYS 24 A SG CYS 24 1_555 disulf 2.034 A CYS 28 A SG CYS 28 1_555 A CYS 48 A SG CYS 48 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION alpha-beta protein, STRUCTURAL GENOMICS, UNKNOWN FUNCTION COCH_HUMAN UNP 1 27 O43405 AAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGRENYSSVDA NGIQSQMLSRWSASFTVTKG 27 126 1JBI 1 100 O43405 A 1 1 100 1 ALA conflict THR 1 1JBI A O43405 UNP 27 1 1 LYS conflict LEU 99 1JBI A O43405 UNP 125 99 1 GLY conflict GLU 100 1JBI A O43405 UNP 126 100 5 3 parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A ILE 4 A ILE 4 A ALA 5 A ALA 5 A LYS 19 A LYS 19 A CYS 24 A CYS 24 A GLY 62 A GLY 62 A LEU 69 A LEU 69 A SER 94 A SER 94 A THR 98 A THR 98 A TYR 41 A TYR 41 A ALA 42 A ALA 42 A VAL 35 A VAL 35 A TYR 36 A TYR 36 A GLN 84 A GLN 84 A GLN 86 A GLN 86 A VAL 78 A VAL 78 A ASP 79 A ASP 79