1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liepinsh, E.
Trexler, M.
Kaikkonen, A.
Weigelt, J.
Banyai, L.
Patthy, L.
Otting, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
20
5347
5353
10.1093/emboj/20.19.5347
11574466
NMR structure of the LCCL domain and implications for DFNA9 deafness disorder.
2001
10.2210/pdb1jbi/pdb
pdb_00001jbi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10609.979
cochlin
LCCL module
1
man
polymer
COCH-5B2
no
no
TAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGRENYSSVDA
NGIQSQMLSRWSASFTVTLE
TAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGRENYSSVDA
NGIQSQMLSRWSASFTVTLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
M13mp18
9606
Homo sapiens
562
Escherichia coli
JM 109
plasmid
pmed23
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-10-17
1
1
2007-10-21
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2001-06-05
REL
This structure was determined using standard 2D homonuclear techniques
structures with the lowest energy,target function
50
20
2D NOESY,2D ROESY, 2D DQF-COSY,2D TOCSY
3D-15N-separated-NOESY,3D-15N-separated-TOCSY, 1H-15N-HSQC
0.1
4.9
ambient
301
K
0.1
4.9
ambient
301
K
the structures are based on a total of 2532 restraints, 1193 are NOE-derived
distance constraints, 270 dihedral angle restraints and 69 residual dipolar coupling restraints
torsion angle dynamics,simulated annealing
15
closest to the average
1mM LCCL; 90% H2O, 10% D2O
90% H2O/10% D2O
3mg/ml LCCL U-15N; 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.5
Guntert
processing
PROSA
3.4
Guntert
data analysis
XEASY
2.6
Guntert
structure solution
DYANA
1.5
Luginbuhl
refinement
OPAL
2.2
600
Bruker
DMX
800
Varian
UNITY
THR
1
n
1
THR
1
A
ALA
2
n
2
ALA
2
A
PRO
3
n
3
PRO
3
A
ILE
4
n
4
ILE
4
A
ALA
5
n
5
ALA
5
A
ILE
6
n
6
ILE
6
A
THR
7
n
7
THR
7
A
CYS
8
n
8
CYS
8
A
PHE
9
n
9
PHE
9
A
THR
10
n
10
THR
10
A
ARG
11
n
11
ARG
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ASP
14
n
14
ASP
14
A
ILE
15
n
15
ILE
15
A
ARG
16
n
16
ARG
16
A
LYS
17
n
17
LYS
17
A
GLU
18
n
18
GLU
18
A
LYS
19
n
19
LYS
19
A
ALA
20
n
20
ALA
20
A
ASP
21
n
21
ASP
21
A
VAL
22
n
22
VAL
22
A
LEU
23
n
23
LEU
23
A
CYS
24
n
24
CYS
24
A
PRO
25
n
25
PRO
25
A
GLY
26
n
26
GLY
26
A
GLY
27
n
27
GLY
27
A
CYS
28
n
28
CYS
28
A
PRO
29
n
29
PRO
29
A
LEU
30
n
30
LEU
30
A
GLU
31
n
31
GLU
31
A
GLU
32
n
32
GLU
32
A
PHE
33
n
33
PHE
33
A
SER
34
n
34
SER
34
A
VAL
35
n
35
VAL
35
A
TYR
36
n
36
TYR
36
A
GLY
37
n
37
GLY
37
A
ASN
38
n
38
ASN
38
A
ILE
39
n
39
ILE
39
A
VAL
40
n
40
VAL
40
A
TYR
41
n
41
TYR
41
A
ALA
42
n
42
ALA
42
A
SER
43
n
43
SER
43
A
VAL
44
n
44
VAL
44
A
SER
45
n
45
SER
45
A
SER
46
n
46
SER
46
A
ILE
47
n
47
ILE
47
A
CYS
48
n
48
CYS
48
A
GLY
49
n
49
GLY
49
A
ALA
50
n
50
ALA
50
A
ALA
51
n
51
ALA
51
A
VAL
52
n
52
VAL
52
A
HIS
53
n
53
HIS
53
A
ARG
54
n
54
ARG
54
A
GLY
55
n
55
GLY
55
A
VAL
56
n
56
VAL
56
A
ILE
57
n
57
ILE
57
A
SER
58
n
58
SER
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
GLY
61
n
61
GLY
61
A
GLY
62
n
62
GLY
62
A
PRO
63
n
63
PRO
63
A
VAL
64
n
64
VAL
64
A
ARG
65
n
65
ARG
65
A
VAL
66
n
66
VAL
66
A
TYR
67
n
67
TYR
67
A
SER
68
n
68
SER
68
A
LEU
69
n
69
LEU
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
ARG
72
n
72
ARG
72
A
GLU
73
n
73
GLU
73
A
ASN
74
n
74
ASN
74
A
TYR
75
n
75
TYR
75
A
SER
76
n
76
SER
76
A
SER
77
n
77
SER
77
A
VAL
78
n
78
VAL
78
A
ASP
79
n
79
ASP
79
A
ALA
80
n
80
ALA
80
A
ASN
81
n
81
ASN
81
A
GLY
82
n
82
GLY
82
A
ILE
83
n
83
ILE
83
A
GLN
84
n
84
GLN
84
A
SER
85
n
85
SER
85
A
GLN
86
n
86
GLN
86
A
MET
87
n
87
MET
87
A
LEU
88
n
88
LEU
88
A
SER
89
n
89
SER
89
A
ARG
90
n
90
ARG
90
A
TRP
91
n
91
TRP
91
A
SER
92
n
92
SER
92
A
ALA
93
n
93
ALA
93
A
SER
94
n
94
SER
94
A
PHE
95
n
95
PHE
95
A
THR
96
n
96
THR
96
A
VAL
97
n
97
VAL
97
A
THR
98
n
98
THR
98
A
LEU
99
n
99
LEU
99
A
GLU
100
n
100
GLU
100
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
4
A
N
ILE
4
A
O
ASP
21
A
O
ASP
21
A
O
CYS
24
A
O
CYS
24
A
N
GLY
62
A
N
GLY
62
A
N
LEU
69
A
N
LEU
69
A
O
SER
94
A
O
SER
94
A
O
PHE
95
A
O
PHE
95
A
N
TYR
41
A
N
TYR
41
A
N
VAL
35
A
N
VAL
35
A
O
GLN
84
A
O
GLN
84
A
N
SER
85
A
N
SER
85
A
O
VAL
78
A
O
VAL
78
4
A
A
THR
ALA
1
2
-65.98
19
A
A
THR
ALA
1
2
-139.20
1
A
TYR
41
0.075
SIDE CHAIN
1
A
ARG
65
0.131
SIDE CHAIN
1
A
TYR
67
0.079
SIDE CHAIN
2
A
ARG
72
0.102
SIDE CHAIN
3
A
TYR
36
0.077
SIDE CHAIN
3
A
ARG
72
0.118
SIDE CHAIN
5
A
ARG
72
0.089
SIDE CHAIN
6
A
TYR
41
0.082
SIDE CHAIN
6
A
TYR
67
0.071
SIDE CHAIN
6
A
ARG
90
0.090
SIDE CHAIN
8
A
ARG
54
0.092
SIDE CHAIN
9
A
ARG
16
0.086
SIDE CHAIN
9
A
TYR
41
0.072
SIDE CHAIN
10
A
TYR
41
0.077
SIDE CHAIN
10
A
TYR
67
0.066
SIDE CHAIN
11
A
ARG
16
0.104
SIDE CHAIN
11
A
TYR
41
0.070
SIDE CHAIN
12
A
TYR
75
0.084
SIDE CHAIN
12
A
ARG
90
0.076
SIDE CHAIN
13
A
ARG
90
0.155
SIDE CHAIN
14
A
ARG
54
0.155
SIDE CHAIN
14
A
ARG
72
0.080
SIDE CHAIN
15
A
ARG
16
0.117
SIDE CHAIN
15
A
ARG
72
0.107
SIDE CHAIN
16
A
ARG
16
0.081
SIDE CHAIN
16
A
TYR
41
0.099
SIDE CHAIN
18
A
ARG
72
0.099
SIDE CHAIN
19
A
TYR
36
0.073
SIDE CHAIN
20
A
TYR
41
0.107
SIDE CHAIN
20
A
ARG
90
0.151
SIDE CHAIN
1
-3.03
0.50
120.30
117.27
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
90
90
90
N
5
-3.52
0.50
120.30
116.78
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
65
65
65
N
8
-3.16
0.50
120.30
117.14
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
54
54
54
N
9
-3.02
0.50
120.30
117.28
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
72
72
72
N
14
-3.40
0.50
120.30
116.90
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
65
65
65
N
19
-4.04
0.60
121.00
116.96
A
A
A
CB
CG
CD1
TYR
TYR
TYR
67
67
67
N
1
A
CYS
8
54.33
13.37
1
A
CYS
28
41.15
75.51
1
A
LEU
30
-69.52
63.95
1
A
ILE
39
63.36
-67.02
1
A
SER
60
-145.86
-13.00
1
A
ARG
90
61.28
62.08
1
A
SER
92
-78.82
35.50
2
A
CYS
8
51.24
13.70
2
A
CYS
28
41.05
70.33
2
A
ILE
39
62.03
-64.12
2
A
SER
60
-146.84
-14.32
2
A
ARG
90
65.07
62.28
2
A
SER
92
-78.78
33.96
2
A
ALA
93
-165.91
115.35
3
A
ALA
2
-179.99
98.89
3
A
THR
7
-102.21
46.27
3
A
CYS
8
51.21
13.00
3
A
CYS
28
32.35
70.49
3
A
ILE
39
63.64
-60.84
3
A
SER
60
-147.09
-13.46
3
A
ARG
90
60.09
61.86
3
A
SER
92
-78.91
33.79
3
A
ALA
93
-161.92
112.50
4
A
CYS
8
56.51
13.45
4
A
ALA
20
-175.86
147.39
4
A
CYS
28
28.19
70.76
4
A
ILE
39
61.39
-65.59
4
A
SER
60
-146.86
-66.07
4
A
PRO
70
-68.18
-179.35
4
A
SER
92
-80.50
33.81
5
A
CYS
8
51.82
13.23
5
A
CYS
28
40.79
71.89
5
A
ILE
39
62.44
-66.97
5
A
ASN
59
-65.90
73.47
5
A
SER
60
-147.20
-13.80
5
A
PRO
70
-59.70
171.11
5
A
SER
89
-100.47
79.32
5
A
SER
92
-78.91
33.79
5
A
ALA
93
-161.96
108.68
6
A
CYS
8
49.82
13.68
6
A
ARG
16
-119.89
64.42
6
A
CYS
28
42.08
76.63
6
A
ILE
39
63.90
-61.29
6
A
ASN
59
-64.03
74.35
6
A
SER
60
-146.72
-21.27
6
A
SER
92
-78.73
33.39
6
A
ALA
93
-160.27
95.44
7
A
PRO
3
-64.99
-179.79
7
A
CYS
8
57.85
13.32
7
A
CYS
28
40.87
76.09
7
A
GLU
31
-96.37
-69.49
7
A
ILE
39
59.44
-69.05
7
A
SER
60
-146.36
-13.59
7
A
ARG
90
61.85
62.11
7
A
SER
92
-78.67
33.78
8
A
THR
7
-84.21
34.15
8
A
CYS
8
46.28
12.69
8
A
CYS
28
41.45
76.56
8
A
ILE
39
63.62
-64.42
8
A
ASN
59
-63.90
72.79
8
A
SER
60
-147.51
-13.91
8
A
ARG
90
61.91
61.91
8
A
SER
92
-79.22
33.74
9
A
PRO
3
-69.85
-178.38
9
A
CYS
8
49.22
12.82
9
A
CYS
28
40.74
76.16
9
A
PRO
29
-69.71
-173.94
9
A
ILE
39
64.65
-63.08
9
A
SER
60
-147.31
-13.51
9
A
PRO
70
-58.19
171.12
9
A
ARG
90
64.02
62.38
9
A
SER
92
-80.24
33.35
9
A
ALA
93
-166.53
110.13
10
A
CYS
28
41.67
76.36
10
A
GLU
31
-97.54
-63.70
10
A
ILE
39
58.64
-75.66
10
A
ASN
59
-68.33
73.09
10
A
SER
60
-146.99
-13.40
10
A
SER
92
-78.78
33.69
11
A
ALA
2
178.18
156.32
11
A
CYS
28
41.67
76.25
11
A
GLU
31
-96.55
-60.81
11
A
ILE
39
62.52
-67.35
11
A
SER
60
-146.69
-13.27
11
A
ASN
81
48.51
24.17
11
A
ARG
90
61.13
61.90
11
A
SER
92
-78.53
34.12
12
A
CYS
8
47.96
13.27
12
A
CYS
28
40.02
76.45
12
A
ILE
39
62.70
-61.23
12
A
SER
60
-146.66
-65.51
12
A
PRO
70
-64.99
-177.24
12
A
SER
92
-90.17
33.01
12
A
ALA
93
-165.90
102.87
13
A
CYS
8
41.02
12.91
13
A
CYS
28
41.12
75.96
13
A
LEU
30
-69.90
64.90
13
A
GLU
31
-96.24
-75.64
13
A
ILE
39
63.51
-59.94
13
A
SER
60
-146.76
-13.45
13
A
PRO
70
-63.87
-178.37
13
A
ARG
90
62.15
62.24
13
A
SER
92
-79.20
33.20
13
A
ALA
93
-166.52
116.20
14
A
CYS
8
54.18
16.24
14
A
CYS
28
29.01
75.72
14
A
GLU
32
-150.11
88.65
14
A
ILE
39
62.11
-63.09
14
A
SER
60
-147.05
-13.59
14
A
SER
92
-78.42
33.31
15
A
ALA
2
173.97
136.53
15
A
CYS
8
58.06
16.26
15
A
CYS
28
41.57
76.03
15
A
ILE
39
62.44
-61.78
15
A
SER
60
-147.07
-14.32
15
A
SER
89
-111.09
77.51
15
A
ARG
90
66.49
61.86
15
A
SER
92
-78.91
34.11
15
A
ALA
93
-164.02
110.74
16
A
PRO
3
-67.43
-173.61
16
A
CYS
28
41.22
76.03
16
A
GLU
31
-96.73
-70.51
16
A
ILE
39
62.51
-55.32
16
A
ASN
59
-63.69
73.25
16
A
SER
60
-146.82
-29.24
16
A
ARG
90
62.86
62.26
16
A
SER
92
-80.08
33.94
16
A
ALA
93
-164.24
114.83
17
A
CYS
8
56.69
19.39
17
A
THR
10
-29.59
118.54
17
A
CYS
24
-111.11
79.83
17
A
CYS
28
41.33
76.37
17
A
GLU
31
-87.35
-75.83
17
A
ILE
39
59.91
-62.40
17
A
SER
60
-147.23
-13.62
17
A
ARG
90
66.36
61.85
17
A
SER
92
-78.70
33.67
17
A
ALA
93
-164.28
106.12
18
A
CYS
8
55.98
13.26
18
A
ARG
16
-108.94
65.99
18
A
CYS
28
30.76
68.82
18
A
ILE
39
61.88
-65.11
18
A
SER
60
-146.92
-16.53
18
A
SER
92
-78.63
33.60
19
A
CYS
8
48.25
12.95
19
A
CYS
28
37.60
76.03
19
A
ILE
39
62.46
-62.05
19
A
SER
60
-146.79
-13.60
19
A
PRO
70
-58.37
174.29
19
A
SER
92
-81.59
33.45
19
A
ALA
93
-165.70
101.25
20
A
ARG
16
-99.37
35.52
20
A
CYS
28
41.15
75.13
20
A
GLU
31
-96.53
-66.30
20
A
ILE
39
64.56
-59.08
20
A
SER
60
-147.14
-13.86
20
A
SER
89
-106.13
76.81
20
A
SER
92
-80.23
33.94
NMR structure of the LCCL domain
1
N
N
A
SER
46
A
SER
46
HELX_P
A
GLY
55
A
GLY
55
1
1
10
disulf
2.039
A
CYS
8
A
SG
CYS
8
1_555
A
CYS
24
A
SG
CYS
24
1_555
disulf
2.034
A
CYS
28
A
SG
CYS
28
1_555
A
CYS
48
A
SG
CYS
48
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
alpha-beta protein, STRUCTURAL GENOMICS, UNKNOWN FUNCTION
COCH_HUMAN
UNP
1
27
O43405
AAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGRENYSSVDA
NGIQSQMLSRWSASFTVTKG
27
126
1JBI
1
100
O43405
A
1
1
100
1
ALA
conflict
THR
1
1JBI
A
O43405
UNP
27
1
1
LYS
conflict
LEU
99
1JBI
A
O43405
UNP
125
99
1
GLY
conflict
GLU
100
1JBI
A
O43405
UNP
126
100
5
3
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
ILE
4
A
ILE
4
A
ALA
5
A
ALA
5
A
LYS
19
A
LYS
19
A
CYS
24
A
CYS
24
A
GLY
62
A
GLY
62
A
LEU
69
A
LEU
69
A
SER
94
A
SER
94
A
THR
98
A
THR
98
A
TYR
41
A
TYR
41
A
ALA
42
A
ALA
42
A
VAL
35
A
VAL
35
A
TYR
36
A
TYR
36
A
GLN
84
A
GLN
84
A
GLN
86
A
GLN
86
A
VAL
78
A
VAL
78
A
ASP
79
A
ASP
79