0.025982
0.000000
0.000000
0.000000
0.015224
0.000000
0.000000
0.000000
0.012644
0.00000
0.00000
0.00000
Jingzhi, L.
Bingdong, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.488
65.686
79.087
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
318
1127
1137
10.1016/S0022-2836(02)00188-2
12054807
Crystal structure of E. coli Hsp100 ClpB nucleotide-binding domain 1 (NBD1) and mechanistic studies on ClpB ATPase activity.
2002
10.2210/pdb1jbk/pdb
pdb_00001jbk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
1
CCD
2001-01-01
ADSC QUANTUM 4
SAGITALLY FOCUSED Si(111)
MAD
M
x-ray
1
0.9786
1.0
0.9784
1.0
0.9632
1.0
0.9941
1.0
1.0
1.0
14-BM-C
APS
0.9786, 0.9784, 0.9632, 0.9941
SYNCHROTRON
APS BEAMLINE 14-BM-C
14-BM-D
APS
1.0
SYNCHROTRON
APS BEAMLINE 14-BM-D
21532.824
CLPB PROTEIN
first nucleotide binding domain (Residues 159-351)
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
296
nat
water
HEAT SHOCK PROTEIN F84.1
no
no
HMQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR
VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL
DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILR
HMQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR
VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL
DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET15b
1
2.32
47.01
VAPOR DIFFUSION, HANGING DROP
7.5
ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-06-05
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1NBD belongs to the AAA ATPase family
RCSB
Y
RCSB
2001-06-05
REL
REL
MG
MAGNESIUM ION
HOH
water
MG2
1
2
MG
MG
1
A
HOH
2
3
HOH
HOH
352
A
HOH
3
3
HOH
HOH
353
A
HOH
4
3
HOH
HOH
354
A
HOH
5
3
HOH
HOH
355
A
HOH
6
3
HOH
HOH
356
A
HOH
7
3
HOH
HOH
357
A
HOH
8
3
HOH
HOH
358
A
HOH
9
3
HOH
HOH
359
A
HOH
10
3
HOH
HOH
360
A
HOH
11
3
HOH
HOH
361
A
HOH
12
3
HOH
HOH
362
A
HOH
13
3
HOH
HOH
363
A
HOH
14
3
HOH
HOH
364
A
HOH
15
3
HOH
HOH
365
A
HOH
16
3
HOH
HOH
366
A
HOH
17
3
HOH
HOH
367
A
HOH
18
3
HOH
HOH
368
A
HOH
19
3
HOH
HOH
369
A
HOH
20
3
HOH
HOH
370
A
HOH
21
3
HOH
HOH
371
A
HOH
22
3
HOH
HOH
372
A
HOH
23
3
HOH
HOH
373
A
HOH
24
3
HOH
HOH
374
A
HOH
25
3
HOH
HOH
375
A
HOH
26
3
HOH
HOH
376
A
HOH
27
3
HOH
HOH
377
A
HOH
28
3
HOH
HOH
378
A
HOH
29
3
HOH
HOH
379
A
HOH
30
3
HOH
HOH
380
A
HOH
31
3
HOH
HOH
381
A
HOH
32
3
HOH
HOH
382
A
HOH
33
3
HOH
HOH
383
A
HOH
34
3
HOH
HOH
384
A
HOH
35
3
HOH
HOH
385
A
HOH
36
3
HOH
HOH
386
A
HOH
37
3
HOH
HOH
387
A
HOH
38
3
HOH
HOH
388
A
HOH
39
3
HOH
HOH
389
A
HOH
40
3
HOH
HOH
390
A
HOH
41
3
HOH
HOH
391
A
HOH
42
3
HOH
HOH
392
A
HOH
43
3
HOH
HOH
393
A
HOH
44
3
HOH
HOH
394
A
HOH
45
3
HOH
HOH
395
A
HOH
46
3
HOH
HOH
396
A
HOH
47
3
HOH
HOH
397
A
HOH
48
3
HOH
HOH
398
A
HOH
49
3
HOH
HOH
399
A
HOH
50
3
HOH
HOH
400
A
HOH
51
3
HOH
HOH
401
A
HOH
52
3
HOH
HOH
402
A
HOH
53
3
HOH
HOH
403
A
HOH
54
3
HOH
HOH
404
A
HOH
55
3
HOH
HOH
405
A
HOH
56
3
HOH
HOH
406
A
HOH
57
3
HOH
HOH
407
A
HOH
58
3
HOH
HOH
408
A
HOH
59
3
HOH
HOH
409
A
HOH
60
3
HOH
HOH
410
A
HOH
61
3
HOH
HOH
411
A
HOH
62
3
HOH
HOH
412
A
HOH
63
3
HOH
HOH
413
A
HOH
64
3
HOH
HOH
414
A
HOH
65
3
HOH
HOH
415
A
HOH
66
3
HOH
HOH
416
A
HOH
67
3
HOH
HOH
417
A
HOH
68
3
HOH
HOH
418
A
HOH
69
3
HOH
HOH
419
A
HOH
70
3
HOH
HOH
420
A
HOH
71
3
HOH
HOH
421
A
HOH
72
3
HOH
HOH
422
A
HOH
73
3
HOH
HOH
423
A
HOH
74
3
HOH
HOH
424
A
HOH
75
3
HOH
HOH
425
A
HOH
76
3
HOH
HOH
426
A
HOH
77
3
HOH
HOH
427
A
HOH
78
3
HOH
HOH
428
A
HOH
79
3
HOH
HOH
429
A
HOH
80
3
HOH
HOH
430
A
HOH
81
3
HOH
HOH
431
A
HOH
82
3
HOH
HOH
432
A
HOH
83
3
HOH
HOH
433
A
HOH
84
3
HOH
HOH
434
A
HOH
85
3
HOH
HOH
435
A
HOH
86
3
HOH
HOH
436
A
HOH
87
3
HOH
HOH
437
A
HOH
88
3
HOH
HOH
438
A
HOH
89
3
HOH
HOH
439
A
HOH
90
3
HOH
HOH
440
A
HOH
91
3
HOH
HOH
441
A
HOH
92
3
HOH
HOH
442
A
HOH
93
3
HOH
HOH
443
A
HOH
94
3
HOH
HOH
444
A
HOH
95
3
HOH
HOH
445
A
HOH
96
3
HOH
HOH
446
A
HOH
97
3
HOH
HOH
447
A
HOH
98
3
HOH
HOH
448
A
HOH
99
3
HOH
HOH
449
A
HOH
100
3
HOH
HOH
450
A
HOH
101
3
HOH
HOH
451
A
HOH
102
3
HOH
HOH
452
A
HOH
103
3
HOH
HOH
453
A
HOH
104
3
HOH
HOH
454
A
HOH
105
3
HOH
HOH
455
A
HOH
106
3
HOH
HOH
456
A
HOH
107
3
HOH
HOH
457
A
HOH
108
3
HOH
HOH
458
A
HOH
109
3
HOH
HOH
459
A
HOH
110
3
HOH
HOH
460
A
HOH
111
3
HOH
HOH
461
A
HOH
112
3
HOH
HOH
462
A
HOH
113
3
HOH
HOH
463
A
HOH
114
3
HOH
HOH
464
A
HOH
115
3
HOH
HOH
465
A
HOH
116
3
HOH
HOH
466
A
HOH
117
3
HOH
HOH
467
A
HOH
118
3
HOH
HOH
468
A
HOH
119
3
HOH
HOH
469
A
HOH
120
3
HOH
HOH
470
A
HOH
121
3
HOH
HOH
471
A
HOH
122
3
HOH
HOH
472
A
HOH
123
3
HOH
HOH
473
A
HOH
124
3
HOH
HOH
474
A
HOH
125
3
HOH
HOH
475
A
HOH
126
3
HOH
HOH
476
A
HOH
127
3
HOH
HOH
477
A
HOH
128
3
HOH
HOH
478
A
HOH
129
3
HOH
HOH
479
A
HOH
130
3
HOH
HOH
480
A
HOH
131
3
HOH
HOH
481
A
HOH
132
3
HOH
HOH
482
A
HOH
133
3
HOH
HOH
483
A
HOH
134
3
HOH
HOH
484
A
HOH
135
3
HOH
HOH
485
A
HOH
136
3
HOH
HOH
486
A
HOH
137
3
HOH
HOH
487
A
HOH
138
3
HOH
HOH
488
A
HOH
139
3
HOH
HOH
489
A
HOH
140
3
HOH
HOH
490
A
HOH
141
3
HOH
HOH
491
A
HOH
142
3
HOH
HOH
492
A
HOH
143
3
HOH
HOH
493
A
HOH
144
3
HOH
HOH
494
A
HOH
145
3
HOH
HOH
495
A
HOH
146
3
HOH
HOH
496
A
HOH
147
3
HOH
HOH
497
A
HOH
148
3
HOH
HOH
498
A
HOH
149
3
HOH
HOH
499
A
HOH
150
3
HOH
HOH
500
A
HOH
151
3
HOH
HOH
501
A
HOH
152
3
HOH
HOH
502
A
HOH
153
3
HOH
HOH
503
A
HOH
154
3
HOH
HOH
504
A
HOH
155
3
HOH
HOH
505
A
HOH
156
3
HOH
HOH
506
A
HOH
157
3
HOH
HOH
507
A
HOH
158
3
HOH
HOH
508
A
HOH
159
3
HOH
HOH
509
A
HOH
160
3
HOH
HOH
510
A
HOH
161
3
HOH
HOH
511
A
HOH
162
3
HOH
HOH
512
A
HOH
163
3
HOH
HOH
513
A
HOH
164
3
HOH
HOH
514
A
HOH
165
3
HOH
HOH
515
A
HOH
166
3
HOH
HOH
516
A
HOH
167
3
HOH
HOH
517
A
HOH
168
3
HOH
HOH
518
A
HOH
169
3
HOH
HOH
519
A
HOH
170
3
HOH
HOH
520
A
HOH
171
3
HOH
HOH
521
A
HOH
172
3
HOH
HOH
522
A
HOH
173
3
HOH
HOH
523
A
HOH
174
3
HOH
HOH
524
A
HOH
175
3
HOH
HOH
525
A
HOH
176
3
HOH
HOH
526
A
HOH
177
3
HOH
HOH
527
A
HOH
178
3
HOH
HOH
528
A
HOH
179
3
HOH
HOH
529
A
HOH
180
3
HOH
HOH
530
A
HOH
181
3
HOH
HOH
531
A
HOH
182
3
HOH
HOH
532
A
HOH
183
3
HOH
HOH
533
A
HOH
184
3
HOH
HOH
534
A
HOH
185
3
HOH
HOH
535
A
HOH
186
3
HOH
HOH
536
A
HOH
187
3
HOH
HOH
537
A
HOH
188
3
HOH
HOH
538
A
HOH
189
3
HOH
HOH
539
A
HOH
190
3
HOH
HOH
540
A
HOH
191
3
HOH
HOH
541
A
HOH
192
3
HOH
HOH
542
A
HOH
193
3
HOH
HOH
543
A
HOH
194
3
HOH
HOH
544
A
HOH
195
3
HOH
HOH
545
A
HOH
196
3
HOH
HOH
546
A
HOH
197
3
HOH
HOH
547
A
HOH
198
3
HOH
HOH
548
A
HOH
199
3
HOH
HOH
549
A
HOH
200
3
HOH
HOH
550
A
HOH
201
3
HOH
HOH
551
A
HOH
202
3
HOH
HOH
552
A
HOH
203
3
HOH
HOH
553
A
HOH
204
3
HOH
HOH
554
A
HOH
205
3
HOH
HOH
555
A
HOH
206
3
HOH
HOH
556
A
HOH
207
3
HOH
HOH
557
A
HOH
208
3
HOH
HOH
558
A
HOH
209
3
HOH
HOH
559
A
HOH
210
3
HOH
HOH
560
A
HOH
211
3
HOH
HOH
561
A
HOH
212
3
HOH
HOH
562
A
HOH
213
3
HOH
HOH
563
A
HOH
214
3
HOH
HOH
564
A
HOH
215
3
HOH
HOH
565
A
HOH
216
3
HOH
HOH
566
A
HOH
217
3
HOH
HOH
567
A
HOH
218
3
HOH
HOH
568
A
HOH
219
3
HOH
HOH
569
A
HOH
220
3
HOH
HOH
570
A
HOH
221
3
HOH
HOH
571
A
HOH
222
3
HOH
HOH
572
A
HOH
223
3
HOH
HOH
573
A
HOH
224
3
HOH
HOH
574
A
HOH
225
3
HOH
HOH
575
A
HOH
226
3
HOH
HOH
576
A
HOH
227
3
HOH
HOH
577
A
HOH
228
3
HOH
HOH
578
A
HOH
229
3
HOH
HOH
579
A
HOH
230
3
HOH
HOH
580
A
HOH
231
3
HOH
HOH
581
A
HOH
232
3
HOH
HOH
582
A
HOH
233
3
HOH
HOH
583
A
HOH
234
3
HOH
HOH
584
A
HOH
235
3
HOH
HOH
585
A
HOH
236
3
HOH
HOH
586
A
HOH
237
3
HOH
HOH
587
A
HOH
238
3
HOH
HOH
588
A
HOH
239
3
HOH
HOH
589
A
HOH
240
3
HOH
HOH
590
A
HOH
241
3
HOH
HOH
591
A
HOH
242
3
HOH
HOH
592
A
HOH
243
3
HOH
HOH
593
A
HOH
244
3
HOH
HOH
594
A
HOH
245
3
HOH
HOH
595
A
HOH
246
3
HOH
HOH
596
A
HOH
247
3
HOH
HOH
597
A
HOH
248
3
HOH
HOH
598
A
HOH
249
3
HOH
HOH
599
A
HOH
250
3
HOH
HOH
600
A
HOH
251
3
HOH
HOH
601
A
HOH
252
3
HOH
HOH
602
A
HOH
253
3
HOH
HOH
603
A
HOH
254
3
HOH
HOH
604
A
HOH
255
3
HOH
HOH
605
A
HOH
256
3
HOH
HOH
606
A
HOH
257
3
HOH
HOH
607
A
HOH
258
3
HOH
HOH
608
A
HOH
259
3
HOH
HOH
609
A
HOH
260
3
HOH
HOH
610
A
HOH
261
3
HOH
HOH
611
A
HOH
262
3
HOH
HOH
612
A
HOH
263
3
HOH
HOH
613
A
HOH
264
3
HOH
HOH
614
A
HOH
266
3
HOH
HOH
615
A
HOH
267
3
HOH
HOH
616
A
HOH
268
3
HOH
HOH
617
A
HOH
269
3
HOH
HOH
618
A
HOH
270
3
HOH
HOH
619
A
HOH
271
3
HOH
HOH
620
A
HOH
272
3
HOH
HOH
621
A
HOH
273
3
HOH
HOH
622
A
HOH
274
3
HOH
HOH
623
A
HOH
275
3
HOH
HOH
624
A
HOH
276
3
HOH
HOH
625
A
HOH
277
3
HOH
HOH
626
A
HOH
278
3
HOH
HOH
627
A
HOH
279
3
HOH
HOH
628
A
HOH
280
3
HOH
HOH
629
A
HOH
281
3
HOH
HOH
630
A
HOH
282
3
HOH
HOH
631
A
HOH
283
3
HOH
HOH
632
A
HOH
284
3
HOH
HOH
633
A
HOH
285
3
HOH
HOH
634
A
HOH
286
3
HOH
HOH
635
A
HOH
287
3
HOH
HOH
636
A
HOH
288
3
HOH
HOH
637
A
HOH
289
3
HOH
HOH
638
A
HOH
290
3
HOH
HOH
639
A
HOH
291
3
HOH
HOH
640
A
HOH
292
3
HOH
HOH
641
A
HOH
293
3
HOH
HOH
642
A
HOH
294
3
HOH
HOH
643
A
HOH
295
3
HOH
HOH
644
A
HOH
296
3
HOH
HOH
645
A
HOH
297
3
HOH
HOH
646
A
HOH
298
3
HOH
HOH
647
A
HIS
157
n
1
HIS
157
A
MET
158
n
2
MET
158
A
GLN
159
n
3
GLN
159
A
ALA
160
n
4
ALA
160
A
LEU
161
n
5
LEU
161
A
LYS
162
n
6
LYS
162
A
LYS
163
n
7
LYS
163
A
TYR
164
n
8
TYR
164
A
THR
165
n
9
THR
165
A
ILE
166
n
10
ILE
166
A
ASP
167
n
11
ASP
167
A
LEU
168
n
12
LEU
168
A
THR
169
n
13
THR
169
A
GLU
170
n
14
GLU
170
A
ARG
171
n
15
ARG
171
A
ALA
172
n
16
ALA
172
A
GLU
173
n
17
GLU
173
A
GLN
174
n
18
GLN
174
A
GLY
175
n
19
GLY
175
A
LYS
176
n
20
LYS
176
A
LEU
177
n
21
LEU
177
A
ASP
178
n
22
ASP
178
A
PRO
179
n
23
PRO
179
A
VAL
180
n
24
VAL
180
A
ILE
181
n
25
ILE
181
A
GLY
182
n
26
GLY
182
A
ARG
183
n
27
ARG
183
A
ASP
184
n
28
ASP
184
A
GLU
185
n
29
GLU
185
A
GLU
186
n
30
GLU
186
A
ILE
187
n
31
ILE
187
A
ARG
188
n
32
ARG
188
A
ARG
189
n
33
ARG
189
A
THR
190
n
34
THR
190
A
ILE
191
n
35
ILE
191
A
GLN
192
n
36
GLN
192
A
VAL
193
n
37
VAL
193
A
LEU
194
n
38
LEU
194
A
GLN
195
n
39
GLN
195
A
ARG
196
n
40
ARG
196
A
ARG
197
n
41
ARG
197
A
THR
198
n
42
THR
198
A
LYS
199
n
43
LYS
199
A
ASN
200
n
44
ASN
200
A
ASN
201
n
45
ASN
201
A
PRO
202
n
46
PRO
202
A
VAL
203
n
47
VAL
203
A
LEU
204
n
48
LEU
204
A
ILE
205
n
49
ILE
205
A
GLY
206
n
50
GLY
206
A
GLU
207
n
51
GLU
207
A
PRO
208
n
52
PRO
208
A
GLY
209
n
53
GLY
209
A
VAL
210
n
54
VAL
210
A
GLY
211
n
55
GLY
211
A
LYS
212
n
56
LYS
212
A
THR
213
n
57
THR
213
A
ALA
214
n
58
ALA
214
A
ILE
215
n
59
ILE
215
A
VAL
216
n
60
VAL
216
A
GLU
217
n
61
GLU
217
A
GLY
218
n
62
GLY
218
A
LEU
219
n
63
LEU
219
A
ALA
220
n
64
ALA
220
A
GLN
221
n
65
GLN
221
A
ARG
222
n
66
ARG
222
A
ILE
223
n
67
ILE
223
A
ILE
224
n
68
ILE
224
A
ASN
225
n
69
ASN
225
A
GLY
226
n
70
GLY
226
A
GLU
227
n
71
GLU
227
A
VAL
228
n
72
VAL
228
A
PRO
229
n
73
PRO
229
A
GLU
230
n
74
GLU
230
A
GLY
231
n
75
GLY
231
A
LEU
232
n
76
LEU
232
A
LYS
233
n
77
LYS
233
A
GLY
234
n
78
GLY
234
A
ARG
235
n
79
ARG
235
A
ARG
236
n
80
ARG
236
A
VAL
237
n
81
VAL
237
A
LEU
238
n
82
LEU
238
A
ALA
239
n
83
ALA
239
A
LEU
240
n
84
LEU
240
A
ASP
241
n
85
ASP
241
A
MET
242
n
86
MET
242
A
GLY
243
n
87
GLY
243
A
ALA
244
n
88
ALA
244
A
LEU
245
n
89
LEU
245
A
VAL
246
n
90
VAL
246
A
ALA
247
n
91
ALA
247
A
GLY
248
n
92
GLY
248
A
ALA
249
n
93
ALA
249
A
LYS
250
n
94
LYS
250
A
TYR
251
n
95
TYR
251
A
ARG
252
n
96
ARG
252
A
GLY
253
n
97
GLY
253
A
GLU
254
n
98
GLU
254
A
PHE
255
n
99
PHE
255
A
GLU
256
n
100
GLU
256
A
GLU
257
n
101
GLU
257
A
ARG
258
n
102
ARG
258
A
LEU
259
n
103
LEU
259
A
LYS
260
n
104
LYS
260
A
GLY
261
n
105
GLY
261
A
VAL
262
n
106
VAL
262
A
LEU
263
n
107
LEU
263
A
ASN
264
n
108
ASN
264
A
ASP
265
n
109
ASP
265
A
LEU
266
n
110
LEU
266
A
ALA
267
n
111
ALA
267
A
LYS
268
n
112
LYS
268
A
GLN
269
n
113
GLN
269
A
GLU
270
n
114
GLU
270
A
GLY
271
n
115
GLY
271
A
ASN
272
n
116
ASN
272
A
VAL
273
n
117
VAL
273
A
ILE
274
n
118
ILE
274
A
LEU
275
n
119
LEU
275
A
PHE
276
n
120
PHE
276
A
ILE
277
n
121
ILE
277
A
ASP
278
n
122
ASP
278
A
GLU
279
n
123
GLU
279
A
LEU
280
n
124
LEU
280
A
HIS
281
n
125
HIS
281
A
THR
282
n
126
THR
282
A
MET
283
n
127
MET
283
A
VAL
284
n
128
VAL
284
A
GLY
285
n
129
GLY
285
A
ALA
286
n
130
ALA
286
A
n
131
287
A
n
132
288
A
n
133
289
A
n
134
290
A
n
135
291
A
n
136
292
A
MET
293
n
137
MET
293
A
ASP
294
n
138
ASP
294
A
ALA
295
n
139
ALA
295
A
GLY
296
n
140
GLY
296
A
ASN
297
n
141
ASN
297
A
MET
298
n
142
MET
298
A
LEU
299
n
143
LEU
299
A
LYS
300
n
144
LYS
300
A
PRO
301
n
145
PRO
301
A
ALA
302
n
146
ALA
302
A
LEU
303
n
147
LEU
303
A
ALA
304
n
148
ALA
304
A
ARG
305
n
149
ARG
305
A
GLY
306
n
150
GLY
306
A
GLU
307
n
151
GLU
307
A
LEU
308
n
152
LEU
308
A
HIS
309
n
153
HIS
309
A
CYS
310
n
154
CYS
310
A
VAL
311
n
155
VAL
311
A
GLY
312
n
156
GLY
312
A
ALA
313
n
157
ALA
313
A
THR
314
n
158
THR
314
A
THR
315
n
159
THR
315
A
LEU
316
n
160
LEU
316
A
ASP
317
n
161
ASP
317
A
GLU
318
n
162
GLU
318
A
TYR
319
n
163
TYR
319
A
ARG
320
n
164
ARG
320
A
GLN
321
n
165
GLN
321
A
TYR
322
n
166
TYR
322
A
ILE
323
n
167
ILE
323
A
GLU
324
n
168
GLU
324
A
LYS
325
n
169
LYS
325
A
ASP
326
n
170
ASP
326
A
ALA
327
n
171
ALA
327
A
ALA
328
n
172
ALA
328
A
LEU
329
n
173
LEU
329
A
GLU
330
n
174
GLU
330
A
ARG
331
n
175
ARG
331
A
ARG
332
n
176
ARG
332
A
PHE
333
n
177
PHE
333
A
GLN
334
n
178
GLN
334
A
LYS
335
n
179
LYS
335
A
VAL
336
n
180
VAL
336
A
PHE
337
n
181
PHE
337
A
VAL
338
n
182
VAL
338
A
ALA
339
n
183
ALA
339
A
GLU
340
n
184
GLU
340
A
PRO
341
n
185
PRO
341
A
SER
342
n
186
SER
342
A
VAL
343
n
187
VAL
343
A
GLU
344
n
188
GLU
344
A
ASP
345
n
189
ASP
345
A
THR
346
n
190
THR
346
A
ILE
347
n
191
ILE
347
A
ALA
348
n
192
ALA
348
A
ILE
349
n
193
ILE
349
A
LEU
350
n
194
LEU
350
A
ARG
351
n
195
ARG
351
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
166
A
O
ILE
10
A
N
ALA
239
A
N
ALA
83
A
O
ARG
236
A
O
ARG
80
A
N
ILE
274
A
N
ILE
118
A
N
ILE
277
A
N
ILE
121
A
O
VAL
311
A
O
VAL
155
A
N
GLY
312
A
N
GLY
156
A
O
PRO
202
A
O
PRO
46
A
N
VAL
203
A
N
VAL
47
A
O
GLN
334
A
O
GLN
178
1
A
GLY
287
A
GLY
131
1
Y
1
A
LYS
288
A
LYS
132
1
Y
1
A
ALA
289
A
ALA
133
1
Y
1
A
ASP
290
A
ASP
134
1
Y
1
A
GLY
291
A
GLY
135
1
Y
1
A
ALA
292
A
ALA
136
1
Y
1
A
GLU
227
-85.38
44.12
1
A
LYS
250
63.80
-48.75
0.247
0.222
0.225
0.225
1.8
30
1107
13559
13559
random
1
0
0
MAD
Engh & Huber
0.21
5
0.10
1.8
30
296
1772
1
0
1475
1.3
22.4
0.71
0.005
20
1.8
30
1JBK
19159
19159
0
0
0.039
1
32.6
4.2
0.142
1.8
1.88
11.9
0.142
5.2
96.3
data collection
SCALE
data scaling
SCALEPACK
phasing
MADSYS
refinement
CNS
data reduction
SCALE
Crystal Structure of the First Nucelotide Binding Domain of ClpB
1
N
N
2
N
N
3
N
N
A
MET
158
A
MET
2
HELX_P
A
TYR
164
A
TYR
8
1
1
7
A
LEU
168
A
LEU
12
HELX_P
A
GLN
174
A
GLN
18
1
2
7
A
ARG
183
A
ARG
27
HELX_P
A
GLN
195
A
GLN
39
1
3
13
A
GLY
211
A
GLY
55
HELX_P
A
GLY
226
A
GLY
70
1
4
16
A
PRO
229
A
PRO
73
HELX_P
A
LYS
233
A
LYS
77
5
5
5
A
ASP
241
A
ASP
85
HELX_P
A
ALA
247
A
ALA
91
1
6
7
A
TYR
251
A
TYR
95
HELX_P
A
GLN
269
A
GLN
113
1
7
19
A
LEU
280
A
LEU
124
HELX_P
A
VAL
284
A
VAL
128
5
8
5
A
ALA
295
A
ALA
139
HELX_P
A
ARG
305
A
ARG
149
1
9
11
A
THR
315
A
THR
159
HELX_P
A
ILE
323
A
ILE
167
1
10
9
A
ASP
326
A
ASP
170
HELX_P
A
ARG
331
A
ARG
175
1
11
6
A
SER
342
A
SER
186
HELX_P
A
ALA
348
A
ALA
192
1
12
7
CHAPERONE
Beta barrel, CHAPERONE
CLPB_ECOLI
UNP
1
159
P63284
QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL
ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE
YRQYIEKDAALERRFQKVFVAEPSVEDTIAILR
159
351
1JBK
159
351
P63284
A
1
3
195
1
expression tag
HIS
157
1JBK
A
P63284
UNP
1
1
expression tag
MET
158
1JBK
A
P63284
UNP
2
6
anti-parallel
parallel
parallel
parallel
parallel
A
THR
165
A
THR
9
A
ASP
167
A
ASP
11
A
ARG
236
A
ARG
80
A
LEU
240
A
LEU
84
A
VAL
273
A
VAL
117
A
ASP
278
A
ASP
122
A
CYS
310
A
CYS
154
A
THR
314
A
THR
158
A
ASN
201
A
ASN
45
A
ILE
205
A
ILE
49
A
PHE
333
A
PHE
177
A
PHE
337
A
PHE
181
BINDING SITE FOR RESIDUE MG A 1
A
MG
1
Software
3
A
GLY
209
A
GLY
53
3
1_555
A
GLY
211
A
GLY
55
3
1_555
A
LYS
212
A
LYS
56
3
1_555
19
P 21 21 21