0.016556
0.000000
0.002268
0.000000
0.009116
0.000000
0.000000
0.000000
0.025233
0.00000
0.00000
0.00000
Yang, X.
Gerczei, T.
Glover, L.
Correll, C.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.0
97.8
90.0
60.4
109.7
40.0
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H13 N5 O9 P2
409.186
n
ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
S
P
N
39
N
O
N
40
N
O
N
41
N
P
N
42
N
O
N
43
N
O
N
44
N
O
N
45
N
O
N
46
N
C
N
47
R
C
N
48
N
O
N
49
R
C
N
50
N
O
N
51
R
C
N
52
N
O
N
53
R
C
Y
54
N
N
Y
55
N
C
Y
56
N
N
Y
57
N
C
Y
58
N
C
N
59
N
N
Y
60
N
N
Y
61
N
C
Y
62
N
N
Y
63
N
C
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
N
N
98
N
C
N
99
N
N
N
100
N
N
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
O
N
151
N
P
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
C
N
156
R
C
N
157
N
O
N
158
S
C
N
159
N
O
N
160
R
C
N
161
N
O
N
162
R
C
N
163
N
N
N
164
N
C
N
165
N
O
N
166
N
N
N
167
N
C
N
168
N
N
N
169
N
C
N
170
N
C
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
R
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
S
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
O
N
200
N
P
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
C
N
205
R
C
N
206
N
O
N
207
S
C
N
208
N
O
N
209
R
C
N
210
N
O
N
211
R
C
Y
212
N
N
Y
213
N
C
Y
214
N
N
Y
215
N
C
N
216
N
C
N
217
N
O
N
218
N
N
N
219
N
C
N
220
N
N
N
221
N
N
Y
222
N
C
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
N
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
O
N
265
N
O
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
Y
291
N
C
Y
292
N
N
Y
293
N
C
Y
294
N
C
Y
295
N
N
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
S
C
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
K
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
N
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
S
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
O
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
R
C
N
459
N
O
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
N
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
N
509
N
O
N
510
N
O
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
O
N
523
N
P
N
524
N
O
N
525
N
O
N
526
N
O
N
527
N
C
N
528
R
C
N
529
N
O
N
530
S
C
N
531
N
O
N
532
R
C
N
533
N
O
N
534
R
C
N
535
N
N
N
536
N
C
N
537
N
O
N
538
N
N
N
539
N
C
N
540
N
O
N
541
N
C
N
542
N
C
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
N
N
557
S
C
N
558
N
C
N
559
N
O
N
560
N
C
N
561
N
C
N
562
N
C
N
563
N
O
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
sing
Y
72
N
sing
Y
73
N
doub
N
74
N
sing
Y
75
N
doub
N
76
N
sing
N
77
N
sing
Y
78
N
sing
Y
79
N
doub
N
80
N
sing
Y
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
sing
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
doub
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
Y
474
N
doub
Y
475
N
sing
Y
476
N
sing
N
477
N
sing
Y
478
N
doub
Y
479
N
sing
Y
480
N
sing
N
481
N
sing
Y
482
N
sing
Y
483
N
doub
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
doub
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
Y
502
N
doub
Y
503
N
sing
Y
504
N
sing
N
505
N
sing
Y
506
N
doub
N
507
N
sing
Y
508
N
doub
N
509
N
sing
Y
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
doub
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
doub
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
doub
N
546
N
sing
N
547
N
doub
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
doub
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
8
968
973
10.1038/nsb1101-968
11685244
Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping.
2001
10.2210/pdb1jbr/pdb
pdb_00001jbr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2000-03-22
ADSC QUANTUM 4
crystal
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
14-BM-C
APS
1.00
SYNCHROTRON
APS BEAMLINE 14-BM-C
5809.448
5'-R(*GP*CP*GP*CP*UP*CP*CP*UP*CP*AP*GP*UP*AP*CP*GP*AP*GP*(A23))-3'
1
syn
polymer
4234.621
5'-R(*GP*GP*AP*AP*CP*CP*GP*GP*AP*GP*CP*GP*C)-3'
1
syn
polymer
10027.062
31-mer SRD RNA analog
1
syn
polymer
16889.877
Restrictocin
3.1.27.-
2
nat
polymer
39.098
POTASSIUM ION
5
syn
non-polymer
18.015
water
168
nat
water
ribonuclease mitogillin
no
yes
GCGCUCCUCAGUACGAG(A23)
GCGCUCCUCAGUACGAGA
C
polyribonucleotide
no
no
GGAACCGGAGCGC
GGAACCGGAGCGC
F
polyribonucleotide
no
no
GCGCUCCUCAGUACGAGAGGAACCGGAGCGC
GCGCUCCUCAGUACGAGAGGAACCGGAGCGC
D
polyribonucleotide
no
no
ATWTCINQQLNPKTNKWEDKRLLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPK
HSQNGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHQRGNQGDLRLCSH
ATWTCINQQLNPKTNKWEDKRLLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPK
HSQNGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHQRGNQGDLRLCSH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aspergillus
sample
5064
Aspergillus restrictus
1
2.44
49.53
VAPOR DIFFUSION, HANGING DROP
6.5
PEG5000, K-MES, KCl, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
292
PEG5000
1
K-MES
1
KCl
1
-3.714
1
19
F
18
C
13
-3.761
F_G18:C13_C
1
-0.883
-0.354
0.613
-0.504
-3.329
10
11
F
19
C
12
-6.856
F_G19:A12_C
2
-5.502
6.833
0.389
-4.752
-2.457
4
24
F
20
C
11
-104.854
F_A20:U11_C
3
-8.853
-4.245
-0.770
-1.954
10.988
8
2
F
21
C
9
172.879
F_A21:A9_C
4
2.265
6.310
-0.203
-5.185
9.132
10
F
22
C
8
-6.850
F_C22:C8_C
5
-8.453
-6.843
-0.266
-5.818
9.761
F
23
C
7
-1.067
F_C23:U7_C
6
-10.796
-4.963
-0.627
-1.610
-13.288
1
19
F
24
C
6
1.129
F_G24:C6_C
7
-14.015
-0.144
-0.044
-0.136
-9.279
1
19
F
25
C
5
-0.699
F_G25:C5_C
8
-6.651
0.077
-0.178
-0.143
-7.420
1
20
F
26
C
4
2.286
F_A26:U4_C
9
-7.258
-0.303
-0.097
-0.113
0.386
1
19
F
27
C
3
1.520
F_G27:C3_C
10
-8.562
-0.191
-0.287
-0.329
-1.127
1
19
F
28
C
2
5.063
F_C28:G2_C
11
-11.101
0.533
0.183
-0.148
-3.642
1
19
F
29
C
1
1.525
F_G29:C1_C
12
-14.098
0.067
-0.109
-0.233
5.304
1
19
F
30
C
0
1.595
F_C30:G0_C
13
-9.587
0.261
0.055
-0.091
-0.256
1
19
D
0
D
30
-0.573
D_G0:C30_D
14
-11.626
-0.239
0.289
-0.245
5.146
1
19
D
1
D
29
4.528
D_C1:G29_D
15
-11.428
-0.073
-0.011
0.085
1.259
1
19
D
2
D
28
1.997
D_G2:C28_D
16
-10.228
-0.654
-0.114
-0.219
6.537
1
19
D
3
D
27
3.403
D_C3:G27_D
17
-9.684
0.459
-0.039
-0.151
5.679
1
20
D
4
D
26
-2.251
D_U4:A26_D
18
-6.948
-0.018
0.204
-0.251
14.358
1
19
D
5
D
25
5.238
D_C5:G25_D
19
-8.691
0.030
-0.352
-0.146
8.776
1
19
D
6
D
24
7.409
D_C6:G24_D
20
-11.747
0.266
-0.133
-0.096
-20.036
D
7
D
23
1.288
D_U7:C23_D
21
-13.605
4.782
-0.758
-1.330
-10.168
6
D
8
D
22
-10.324
D_C8:C22_D
22
-20.377
6.965
-0.131
-5.375
-15.290
8
2
D
9
D
21
-170.956
D_A9:A21_D
23
-4.663
-6.060
-0.001
5.237
5.985
D
11
D
20
-103.632
D_U11:A20_D
24
-17.853
4.506
-0.618
-1.608
6.611
10
11
D
12
D
19
-3.321
D_A12:G19_D
25
-8.420
-6.947
0.152
-4.363
4.219
1
19
D
13
D
18
-0.010
D_C13:G18_D
26
-9.195
0.201
0.050
-0.203
3.250
69.124
F
F
18
19
3.695
C
C
13
12
3.368
4.186
-0.746
-0.840
FF_G18G19:A12C13_CC
1
6.173
-5.449
68.771
-0.896
0.887
3.893
-16.333
F
F
19
20
-9.628
C
C
12
11
3.273
2.715
-5.317
-0.125
FF_G19A20:U11A12_CC
2
2.074
7.355
-15.974
-1.664
-17.106
3.174
-91.929
F
F
20
21
1.742
C
C
11
9
3.213
-2.503
0.805
0.705
FF_A20A21:A9U11_CC
3
7.016
4.883
-91.694
-0.443
0.692
3.096
115.465
F
F
21
22
-2.594
C
C
9
8
3.066
-4.386
-0.368
-1.319
FF_A21C22:C8A9_CC
4
0.430
-0.254
115.412
-0.736
0.222
3.150
52.119
F
F
22
23
11.041
C
C
8
7
3.527
9.595
0.508
-0.974
FF_C22C23:U7C8_CC
5
-10.390
11.956
50.293
-1.774
-1.298
3.771
52.182
F
F
23
24
6.870
C
C
7
6
4.011
6.012
0.207
-1.379
FF_C23G24:C6U7_CC
6
-7.800
8.914
51.308
-2.047
-0.856
2.623
33.206
F
F
24
25
13.584
C
C
6
5
3.224
7.688
-0.233
-2.176
FF_G24G25:C5C6_CC
7
2.618
-4.625
32.224
-4.978
0.806
2.568
27.079
F
F
25
26
16.356
C
C
5
4
3.190
7.559
0.184
-1.835
FF_G25A26:U4C5_CC
8
0.760
-1.645
26.010
-5.639
-0.221
2.719
33.787
F
F
26
27
10.570
C
C
4
3
3.108
6.111
-0.310
-1.931
FF_A26G27:C3U4_CC
9
0.150
-0.260
33.245
-4.210
0.555
3.071
36.580
F
F
27
28
11.059
C
C
3
2
3.359
6.889
-0.035
-1.188
FF_G27C28:G2C3_CC
10
-3.998
6.418
35.731
-2.837
-0.492
2.378
30.417
F
F
28
29
22.412
C
C
2
1
3.244
11.460
0.003
-1.678
FF_C28G29:C1G2_CC
11
3.130
-6.122
28.052
-5.254
0.557
2.899
34.174
F
F
29
30
4.590
C
C
1
0
3.007
2.694
0.759
-1.593
FF_G29C30:G0C1_CC
12
1.106
-1.884
34.054
-3.096
-1.134
4.776
-15.567
F
D
30
0
-29.954
C
D
0
30
3.324
7.736
0.221
-3.815
FD_C30G0:C30G0_DC
13
-1.748
-6.767
-13.405
6.137
-0.979
3.189
33.625
D
D
0
1
-0.360
D
D
30
29
3.177
-0.209
-0.133
-2.036
DD_G0C1:G29C30_DD
14
0.017
-0.030
33.625
-3.486
0.233
2.379
24.319
D
D
1
2
21.518
D
D
29
28
3.324
8.861
-0.629
-2.047
DD_C1G2:C28G29_DD
15
-0.588
1.428
22.662
-7.379
1.325
2.914
38.540
D
D
2
3
9.210
D
D
28
27
3.184
6.053
0.302
-1.425
DD_G2C3:G27C28_DD
16
-1.887
2.871
38.034
-2.862
-0.677
2.642
31.036
D
D
3
4
14.981
D
D
27
26
3.222
7.908
-0.463
-2.050
DD_C3U4:A26G27_DD
17
-4.185
7.928
29.749
-5.224
0.127
2.550
30.241
D
D
4
5
12.700
D
D
26
25
3.020
6.570
0.092
-1.884
DD_U4C5:G25A26_DD
18
2.058
-3.978
29.465
-4.759
0.183
2.694
30.788
D
D
5
6
16.939
D
D
25
24
3.478
8.858
-0.069
-2.253
DD_C5C6:G24G25_DD
19
-2.930
5.604
29.373
-5.918
-0.424
3.443
51.129
D
D
6
7
17.513
D
D
24
23
4.153
14.832
-0.605
-1.332
DD_C6U7:C23G24_DD
20
10.157
-11.993
48.065
-2.778
1.547
3.067
48.290
D
D
7
8
9.773
D
D
23
22
3.294
7.956
-0.592
-0.880
DD_U7C8:C22C23_DD
21
3.651
-4.485
47.537
-1.684
1.003
0.219
-177.389
D
D
8
9
75.446
D
D
22
21
-0.568
-150.264
3.485
-0.499
DD_C8A9:A21C22_DD
22
-89.644
-45.009
-117.420
0.208
1.768
-0.781
174.736
D
D
9
11
64.168
D
D
21
20
0.931
125.002
1.587
-2.808
DD_A9U11:A20A21_DD
23
122.040
-62.648
13.923
-1.453
-0.748
3.792
-13.746
D
D
11
12
2.712
D
D
20
19
3.264
-0.647
5.128
-0.850
DD_U11A12:G19A20_DD
24
-1.596
-6.685
-13.638
4.245
19.715
3.393
63.493
D
D
12
13
5.067
D
D
19
18
3.485
5.324
0.468
-0.698
DD_A12C13:G18G19_DD
25
-3.721
3.541
63.194
-0.910
-0.617
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-10-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
crystal structure of the ribotoxin restrictocin
structure of Sarcin/Ricin loop from rat 28S RNA
Crystal Structure Of The Sarcin/Ricin Domain From E. Coli 23 S Rrna
Crystal Structure Of The Sarcin/Ricin Domain From E. Coli 23 S Rrna
Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog
Crystal structure of ribotoxin restrictocin complexed with a 29-mer sarcin/ricin domain RNA analog
RCSB
Y
RCSB
2001-06-06
REL
REL
K
POTASSIUM ION
HOH
water
The sequence contains 14 highly conserved nucleotides among all living species.
sample
1AQZ
PDB entry 1aqz
PDB
experimental model
K
202
5
K
K
202
C
K
203
5
K
K
203
F
K
201
5
K
K
201
D
K
204
5
K
K
204
D
K
205
5
K
K
205
D
TIP
8
6
HOH
HOH
203
C
TIP
17
6
HOH
HOH
204
C
TIP
25
6
HOH
HOH
205
C
TIP
39
6
HOH
HOH
206
C
TIP
43
6
HOH
HOH
207
C
TIP
45
6
HOH
HOH
208
C
TIP
61
6
HOH
HOH
209
C
TIP
62
6
HOH
HOH
210
C
TIP
76
6
HOH
HOH
211
C
TIP
80
6
HOH
HOH
212
C
TIP
85
6
HOH
HOH
213
C
TIP
130
6
HOH
HOH
214
C
TIP
137
6
HOH
HOH
215
C
TIP
146
6
HOH
HOH
216
C
TIP
148
6
HOH
HOH
217
C
TIP
149
6
HOH
HOH
218
C
TIP
156
6
HOH
HOH
219
C
TIP
167
6
HOH
HOH
220
C
TIP
169
6
HOH
HOH
221
C
TIP
175
6
HOH
HOH
222
C
TIP
1
6
HOH
HOH
204
F
TIP
4
6
HOH
HOH
205
F
TIP
15
6
HOH
HOH
206
F
TIP
18
6
HOH
HOH
207
F
TIP
22
6
HOH
HOH
208
F
TIP
24
6
HOH
HOH
209
F
TIP
55
6
HOH
HOH
210
F
TIP
60
6
HOH
HOH
211
F
TIP
64
6
HOH
HOH
212
F
TIP
84
6
HOH
HOH
213
F
TIP
94
6
HOH
HOH
214
F
TIP
104
6
HOH
HOH
215
F
TIP
106
6
HOH
HOH
216
F
TIP
115
6
HOH
HOH
217
F
TIP
118
6
HOH
HOH
218
F
TIP
119
6
HOH
HOH
219
F
TIP
125
6
HOH
HOH
220
F
TIP
139
6
HOH
HOH
221
F
TIP
147
6
HOH
HOH
222
F
TIP
151
6
HOH
HOH
223
F
TIP
153
6
HOH
HOH
224
F
TIP
2
6
HOH
HOH
206
D
TIP
7
6
HOH
HOH
207
D
TIP
10
6
HOH
HOH
208
D
TIP
26
6
HOH
HOH
209
D
TIP
32
6
HOH
HOH
210
D
TIP
35
6
HOH
HOH
211
D
TIP
41
6
HOH
HOH
212
D
TIP
47
6
HOH
HOH
213
D
TIP
48
6
HOH
HOH
214
D
TIP
49
6
HOH
HOH
215
D
TIP
52
6
HOH
HOH
216
D
TIP
66
6
HOH
HOH
217
D
TIP
69
6
HOH
HOH
218
D
TIP
70
6
HOH
HOH
219
D
TIP
72
6
HOH
HOH
220
D
TIP
82
6
HOH
HOH
221
D
TIP
86
6
HOH
HOH
222
D
TIP
87
6
HOH
HOH
223
D
TIP
89
6
HOH
HOH
224
D
TIP
96
6
HOH
HOH
225
D
TIP
97
6
HOH
HOH
226
D
TIP
100
6
HOH
HOH
227
D
TIP
103
6
HOH
HOH
228
D
TIP
105
6
HOH
HOH
229
D
TIP
107
6
HOH
HOH
230
D
TIP
116
6
HOH
HOH
231
D
TIP
120
6
HOH
HOH
232
D
TIP
123
6
HOH
HOH
233
D
TIP
124
6
HOH
HOH
234
D
TIP
126
6
HOH
HOH
235
D
TIP
131
6
HOH
HOH
236
D
TIP
132
6
HOH
HOH
237
D
TIP
133
6
HOH
HOH
238
D
TIP
135
6
HOH
HOH
239
D
TIP
143
6
HOH
HOH
240
D
TIP
144
6
HOH
HOH
241
D
TIP
158
6
HOH
HOH
242
D
TIP
168
6
HOH
HOH
243
D
TIP
176
6
HOH
HOH
244
D
TIP
6
6
HOH
HOH
150
A
TIP
9
6
HOH
HOH
151
A
TIP
11
6
HOH
HOH
152
A
TIP
12
6
HOH
HOH
153
A
TIP
13
6
HOH
HOH
154
A
TIP
14
6
HOH
HOH
155
A
TIP
16
6
HOH
HOH
156
A
TIP
19
6
HOH
HOH
157
A
TIP
20
6
HOH
HOH
158
A
TIP
23
6
HOH
HOH
159
A
TIP
30
6
HOH
HOH
160
A
TIP
31
6
HOH
HOH
161
A
TIP
33
6
HOH
HOH
162
A
TIP
36
6
HOH
HOH
163
A
TIP
40
6
HOH
HOH
164
A
TIP
42
6
HOH
HOH
165
A
TIP
44
6
HOH
HOH
166
A
TIP
51
6
HOH
HOH
167
A
TIP
53
6
HOH
HOH
168
A
TIP
54
6
HOH
HOH
169
A
TIP
58
6
HOH
HOH
170
A
TIP
59
6
HOH
HOH
171
A
TIP
65
6
HOH
HOH
172
A
TIP
67
6
HOH
HOH
173
A
TIP
68
6
HOH
HOH
174
A
TIP
71
6
HOH
HOH
175
A
TIP
73
6
HOH
HOH
176
A
TIP
74
6
HOH
HOH
177
A
TIP
75
6
HOH
HOH
178
A
TIP
77
6
HOH
HOH
179
A
TIP
79
6
HOH
HOH
180
A
TIP
81
6
HOH
HOH
181
A
TIP
83
6
HOH
HOH
182
A
TIP
90
6
HOH
HOH
183
A
TIP
95
6
HOH
HOH
184
A
TIP
109
6
HOH
HOH
185
A
TIP
110
6
HOH
HOH
186
A
TIP
111
6
HOH
HOH
187
A
TIP
113
6
HOH
HOH
188
A
TIP
121
6
HOH
HOH
189
A
TIP
122
6
HOH
HOH
190
A
TIP
127
6
HOH
HOH
191
A
TIP
136
6
HOH
HOH
192
A
TIP
138
6
HOH
HOH
193
A
TIP
141
6
HOH
HOH
194
A
TIP
152
6
HOH
HOH
195
A
TIP
154
6
HOH
HOH
196
A
TIP
155
6
HOH
HOH
197
A
TIP
157
6
HOH
HOH
198
A
TIP
159
6
HOH
HOH
199
A
TIP
160
6
HOH
HOH
200
A
TIP
162
6
HOH
HOH
201
A
TIP
164
6
HOH
HOH
202
A
TIP
165
6
HOH
HOH
203
A
TIP
5
6
HOH
HOH
150
B
TIP
21
6
HOH
HOH
151
B
TIP
27
6
HOH
HOH
152
B
TIP
28
6
HOH
HOH
153
B
TIP
29
6
HOH
HOH
154
B
TIP
34
6
HOH
HOH
155
B
TIP
37
6
HOH
HOH
156
B
TIP
38
6
HOH
HOH
157
B
TIP
46
6
HOH
HOH
158
B
TIP
50
6
HOH
HOH
159
B
TIP
56
6
HOH
HOH
160
B
TIP
57
6
HOH
HOH
161
B
TIP
63
6
HOH
HOH
162
B
TIP
78
6
HOH
HOH
163
B
TIP
88
6
HOH
HOH
164
B
TIP
91
6
HOH
HOH
165
B
TIP
92
6
HOH
HOH
166
B
TIP
93
6
HOH
HOH
167
B
TIP
98
6
HOH
HOH
168
B
TIP
99
6
HOH
HOH
169
B
TIP
101
6
HOH
HOH
170
B
TIP
102
6
HOH
HOH
171
B
TIP
108
6
HOH
HOH
172
B
TIP
112
6
HOH
HOH
173
B
TIP
117
6
HOH
HOH
174
B
TIP
128
6
HOH
HOH
175
B
TIP
129
6
HOH
HOH
176
B
TIP
134
6
HOH
HOH
177
B
TIP
140
6
HOH
HOH
178
B
TIP
145
6
HOH
HOH
179
B
TIP
150
6
HOH
HOH
180
B
TIP
161
6
HOH
HOH
181
B
TIP
166
6
HOH
HOH
182
B
TIP
170
6
HOH
HOH
183
B
G
0
n
1
G
0
C
C
1
n
2
C
1
C
G
2
n
3
G
2
C
C
3
n
4
C
3
C
U
4
n
5
U
4
C
C
5
n
6
C
5
C
C
6
n
7
C
6
C
U
7
n
8
U
7
C
C
8
n
9
C
8
C
A
9
n
10
A
9
C
G
10
n
11
G
10
C
U
11
n
12
U
11
C
A
12
n
13
A
12
C
C
13
n
14
C
13
C
G
14
n
15
G
14
C
A
15
n
16
A
15
C
G
16
n
17
G
16
C
A
17
n
18
A23
17
C
G
18
n
1
G
18
F
G
19
n
2
G
19
F
A
20
n
3
A
20
F
A
21
n
4
A
21
F
C
22
n
5
C
22
F
C
23
n
6
C
23
F
G
24
n
7
G
24
F
G
25
n
8
G
25
F
A
26
n
9
A
26
F
G
27
n
10
G
27
F
C
28
n
11
C
28
F
G
29
n
12
G
29
F
C
30
n
13
C
30
F
G
0
n
1
G
0
D
C
1
n
2
C
1
D
G
2
n
3
G
2
D
C
3
n
4
C
3
D
U
4
n
5
U
4
D
C
5
n
6
C
5
D
C
6
n
7
C
6
D
U
7
n
8
U
7
D
C
8
n
9
C
8
D
A
9
n
10
A
9
D
G
10
n
11
G
10
D
U
11
n
12
U
11
D
A
12
n
13
A
12
D
C
13
n
14
C
13
D
G
14
n
15
G
14
D
A
15
n
16
A
15
D
G
16
n
17
G
16
D
A
17
n
18
A
17
D
G
18
n
19
G
18
D
G
19
n
20
G
19
D
A
20
n
21
A
20
D
A
21
n
22
A
21
D
C
22
n
23
C
22
D
C
23
n
24
C
23
D
G
24
n
25
G
24
D
G
25
n
26
G
25
D
A
26
n
27
A
26
D
G
27
n
28
G
27
D
C
28
n
29
C
28
D
G
29
n
30
G
29
D
C
30
n
31
C
30
D
ALA
1
n
1
ALA
1
A
THR
2
n
2
THR
2
A
TRP
3
n
3
TRP
3
A
THR
4
n
4
THR
4
A
CYS
5
n
5
CYS
5
A
ILE
6
n
6
ILE
6
A
ASN
7
n
7
ASN
7
A
GLN
8
n
8
GLN
8
A
GLN
9
n
9
GLN
9
A
LEU
10
n
10
LEU
10
A
ASN
11
n
11
ASN
11
A
PRO
12
n
12
PRO
12
A
LYS
13
n
13
LYS
13
A
THR
14
n
14
THR
14
A
ASN
15
n
15
ASN
15
A
LYS
16
n
16
LYS
16
A
TRP
17
n
17
TRP
17
A
GLU
18
n
18
GLU
18
A
ASP
19
n
19
ASP
19
A
LYS
20
n
20
LYS
20
A
ARG
21
n
21
ARG
21
A
LEU
22
n
22
LEU
22
A
LEU
23
n
23
LEU
23
A
TYR
24
n
24
TYR
24
A
SER
25
n
25
SER
25
A
GLN
26
n
26
GLN
26
A
ALA
27
n
27
ALA
27
A
LYS
28
n
28
LYS
28
A
ALA
29
n
29
ALA
29
A
GLU
30
n
30
GLU
30
A
SER
31
n
31
SER
31
A
ASN
32
n
32
ASN
32
A
SER
33
n
33
SER
33
A
HIS
34
n
34
HIS
34
A
HIS
35
n
35
HIS
35
A
ALA
36
n
36
ALA
36
A
PRO
37
n
37
PRO
37
A
LEU
38
n
38
LEU
38
A
SER
39
n
39
SER
39
A
ASP
40
n
40
ASP
40
A
GLY
41
n
41
GLY
41
A
LYS
42
n
42
LYS
42
A
THR
43
n
43
THR
43
A
GLY
44
n
44
GLY
44
A
SER
45
n
45
SER
45
A
SER
46
n
46
SER
46
A
TYR
47
n
47
TYR
47
A
PRO
48
n
48
PRO
48
A
HIS
49
n
49
HIS
49
A
TRP
50
n
50
TRP
50
A
PHE
51
n
51
PHE
51
A
THR
52
n
52
THR
52
A
ASN
53
n
53
ASN
53
A
GLY
54
n
54
GLY
54
A
TYR
55
n
55
TYR
55
A
ASP
56
n
56
ASP
56
A
GLY
57
n
57
GLY
57
A
ASN
58
n
58
ASN
58
A
GLY
59
n
59
GLY
59
A
LYS
60
n
60
LYS
60
A
LEU
61
n
61
LEU
61
A
ILE
62
n
62
ILE
62
A
LYS
63
n
63
LYS
63
A
GLY
64
n
64
GLY
64
A
ARG
65
n
65
ARG
65
A
THR
66
n
66
THR
66
A
PRO
67
n
67
PRO
67
A
ILE
68
n
68
ILE
68
A
LYS
69
n
69
LYS
69
A
PHE
70
n
70
PHE
70
A
GLY
71
n
71
GLY
71
A
LYS
72
n
72
LYS
72
A
ALA
73
n
73
ALA
73
A
ASP
74
n
74
ASP
74
A
CYS
75
n
75
CYS
75
A
ASP
76
n
76
ASP
76
A
ARG
77
n
77
ARG
77
A
PRO
78
n
78
PRO
78
A
PRO
79
n
79
PRO
79
A
LYS
80
n
80
LYS
80
A
HIS
81
n
81
HIS
81
A
SER
82
n
82
SER
82
A
GLN
83
n
83
GLN
83
A
ASN
84
n
84
ASN
84
A
GLY
85
n
85
GLY
85
A
MET
86
n
86
MET
86
A
GLY
87
n
87
GLY
87
A
LYS
88
n
88
LYS
88
A
ASP
89
n
89
ASP
89
A
ASP
90
n
90
ASP
90
A
HIS
91
n
91
HIS
91
A
TYR
92
n
92
TYR
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
GLU
95
n
95
GLU
95
A
PHE
96
n
96
PHE
96
A
PRO
97
n
97
PRO
97
A
THR
98
n
98
THR
98
A
PHE
99
n
99
PHE
99
A
PRO
100
n
100
PRO
100
A
ASP
101
n
101
ASP
101
A
GLY
102
n
102
GLY
102
A
HIS
103
n
103
HIS
103
A
ASP
104
n
104
ASP
104
A
TYR
105
n
105
TYR
105
A
LYS
106
n
106
LYS
106
A
PHE
107
n
107
PHE
107
A
ASP
108
n
108
ASP
108
A
SER
109
n
109
SER
109
A
LYS
110
n
110
LYS
110
A
LYS
111
n
111
LYS
111
A
PRO
112
n
112
PRO
112
A
LYS
113
n
113
LYS
113
A
GLU
114
n
114
GLU
114
A
ASP
115
n
115
ASP
115
A
PRO
116
n
116
PRO
116
A
GLY
117
n
117
GLY
117
A
PRO
118
n
118
PRO
118
A
ALA
119
n
119
ALA
119
A
ARG
120
n
120
ARG
120
A
VAL
121
n
121
VAL
121
A
ILE
122
n
122
ILE
122
A
TYR
123
n
123
TYR
123
A
THR
124
n
124
THR
124
A
TYR
125
n
125
TYR
125
A
PRO
126
n
126
PRO
126
A
ASN
127
n
127
ASN
127
A
LYS
128
n
128
LYS
128
A
VAL
129
n
129
VAL
129
A
PHE
130
n
130
PHE
130
A
CYS
131
n
131
CYS
131
A
GLY
132
n
132
GLY
132
A
ILE
133
n
133
ILE
133
A
VAL
134
n
134
VAL
134
A
ALA
135
n
135
ALA
135
A
HIS
136
n
136
HIS
136
A
GLN
137
n
137
GLN
137
A
ARG
138
n
138
ARG
138
A
GLY
139
n
139
GLY
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
GLY
142
n
142
GLY
142
A
ASP
143
n
143
ASP
143
A
LEU
144
n
144
LEU
144
A
ARG
145
n
145
ARG
145
A
LEU
146
n
146
LEU
146
A
CYS
147
n
147
CYS
147
A
SER
148
n
148
SER
148
A
HIS
149
n
149
HIS
149
A
ALA
1
n
1
ALA
1
B
THR
2
n
2
THR
2
B
TRP
3
n
3
TRP
3
B
THR
4
n
4
THR
4
B
CYS
5
n
5
CYS
5
B
ILE
6
n
6
ILE
6
B
ASN
7
n
7
ASN
7
B
GLN
8
n
8
GLN
8
B
GLN
9
n
9
GLN
9
B
LEU
10
n
10
LEU
10
B
ASN
11
n
11
ASN
11
B
PRO
12
n
12
PRO
12
B
LYS
13
n
13
LYS
13
B
THR
14
n
14
THR
14
B
ASN
15
n
15
ASN
15
B
LYS
16
n
16
LYS
16
B
TRP
17
n
17
TRP
17
B
GLU
18
n
18
GLU
18
B
ASP
19
n
19
ASP
19
B
LYS
20
n
20
LYS
20
B
ARG
21
n
21
ARG
21
B
LEU
22
n
22
LEU
22
B
LEU
23
n
23
LEU
23
B
TYR
24
n
24
TYR
24
B
SER
25
n
25
SER
25
B
GLN
26
n
26
GLN
26
B
ALA
27
n
27
ALA
27
B
LYS
28
n
28
LYS
28
B
ALA
29
n
29
ALA
29
B
GLU
30
n
30
GLU
30
B
SER
31
n
31
SER
31
B
ASN
32
n
32
ASN
32
B
SER
33
n
33
SER
33
B
HIS
34
n
34
HIS
34
B
HIS
35
n
35
HIS
35
B
ALA
36
n
36
ALA
36
B
PRO
37
n
37
PRO
37
B
LEU
38
n
38
LEU
38
B
SER
39
n
39
SER
39
B
ASP
40
n
40
ASP
40
B
GLY
41
n
41
GLY
41
B
LYS
42
n
42
LYS
42
B
THR
43
n
43
THR
43
B
GLY
44
n
44
GLY
44
B
SER
45
n
45
SER
45
B
SER
46
n
46
SER
46
B
TYR
47
n
47
TYR
47
B
PRO
48
n
48
PRO
48
B
HIS
49
n
49
HIS
49
B
TRP
50
n
50
TRP
50
B
PHE
51
n
51
PHE
51
B
THR
52
n
52
THR
52
B
ASN
53
n
53
ASN
53
B
GLY
54
n
54
GLY
54
B
TYR
55
n
55
TYR
55
B
ASP
56
n
56
ASP
56
B
GLY
57
n
57
GLY
57
B
ASN
58
n
58
ASN
58
B
GLY
59
n
59
GLY
59
B
LYS
60
n
60
LYS
60
B
LEU
61
n
61
LEU
61
B
ILE
62
n
62
ILE
62
B
LYS
63
n
63
LYS
63
B
GLY
64
n
64
GLY
64
B
ARG
65
n
65
ARG
65
B
THR
66
n
66
THR
66
B
PRO
67
n
67
PRO
67
B
ILE
68
n
68
ILE
68
B
LYS
69
n
69
LYS
69
B
PHE
70
n
70
PHE
70
B
GLY
71
n
71
GLY
71
B
LYS
72
n
72
LYS
72
B
ALA
73
n
73
ALA
73
B
ASP
74
n
74
ASP
74
B
CYS
75
n
75
CYS
75
B
ASP
76
n
76
ASP
76
B
ARG
77
n
77
ARG
77
B
PRO
78
n
78
PRO
78
B
PRO
79
n
79
PRO
79
B
LYS
80
n
80
LYS
80
B
HIS
81
n
81
HIS
81
B
SER
82
n
82
SER
82
B
GLN
83
n
83
GLN
83
B
ASN
84
n
84
ASN
84
B
GLY
85
n
85
GLY
85
B
MET
86
n
86
MET
86
B
GLY
87
n
87
GLY
87
B
LYS
88
n
88
LYS
88
B
ASP
89
n
89
ASP
89
B
ASP
90
n
90
ASP
90
B
HIS
91
n
91
HIS
91
B
TYR
92
n
92
TYR
92
B
LEU
93
n
93
LEU
93
B
LEU
94
n
94
LEU
94
B
GLU
95
n
95
GLU
95
B
PHE
96
n
96
PHE
96
B
PRO
97
n
97
PRO
97
B
THR
98
n
98
THR
98
B
PHE
99
n
99
PHE
99
B
PRO
100
n
100
PRO
100
B
ASP
101
n
101
ASP
101
B
GLY
102
n
102
GLY
102
B
HIS
103
n
103
HIS
103
B
ASP
104
n
104
ASP
104
B
TYR
105
n
105
TYR
105
B
LYS
106
n
106
LYS
106
B
PHE
107
n
107
PHE
107
B
ASP
108
n
108
ASP
108
B
SER
109
n
109
SER
109
B
LYS
110
n
110
LYS
110
B
LYS
111
n
111
LYS
111
B
PRO
112
n
112
PRO
112
B
LYS
113
n
113
LYS
113
B
GLU
114
n
114
GLU
114
B
ASP
115
n
115
ASP
115
B
PRO
116
n
116
PRO
116
B
GLY
117
n
117
GLY
117
B
PRO
118
n
118
PRO
118
B
ALA
119
n
119
ALA
119
B
ARG
120
n
120
ARG
120
B
VAL
121
n
121
VAL
121
B
ILE
122
n
122
ILE
122
B
TYR
123
n
123
TYR
123
B
THR
124
n
124
THR
124
B
TYR
125
n
125
TYR
125
B
PRO
126
n
126
PRO
126
B
ASN
127
n
127
ASN
127
B
LYS
128
n
128
LYS
128
B
VAL
129
n
129
VAL
129
B
PHE
130
n
130
PHE
130
B
CYS
131
n
131
CYS
131
B
GLY
132
n
132
GLY
132
B
ILE
133
n
133
ILE
133
B
VAL
134
n
134
VAL
134
B
ALA
135
n
135
ALA
135
B
HIS
136
n
136
HIS
136
B
GLN
137
n
137
GLN
137
B
ARG
138
n
138
ARG
138
B
GLY
139
n
139
GLY
139
B
ASN
140
n
140
ASN
140
B
GLN
141
n
141
GLN
141
B
GLY
142
n
142
GLY
142
B
ASP
143
n
143
ASP
143
B
LEU
144
n
144
LEU
144
B
ARG
145
n
145
ARG
145
B
LEU
146
n
146
LEU
146
B
CYS
147
n
147
CYS
147
B
SER
148
n
148
SER
148
B
HIS
149
n
149
HIS
149
B
author_defined_assembly
3
trimeric
author_defined_assembly
2
dimeric
C
U
7
A
O4
U
8
1_555
C
K
202
F
K
K
1_555
C
HOH
207
K
O
HOH
1_555
72.8
C
U
7
A
O4
U
8
1_555
C
K
202
F
K
K
1_555
F
HOH
208
L
O
HOH
1_555
65.7
C
HOH
207
K
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
208
L
O
HOH
1_555
100.1
C
U
7
A
O4
U
8
1_555
C
K
202
F
K
K
1_555
F
HOH
209
L
O
HOH
1_555
83.5
C
HOH
207
K
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
209
L
O
HOH
1_555
156.1
F
HOH
208
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
209
L
O
HOH
1_555
66.2
C
U
7
A
O4
U
8
1_555
C
K
202
F
K
K
1_555
F
HOH
211
L
O
HOH
1_555
155.3
C
HOH
207
K
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
211
L
O
HOH
1_555
89.8
F
HOH
208
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
211
L
O
HOH
1_555
136.4
F
HOH
209
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
211
L
O
HOH
1_555
113.8
C
U
7
A
O4
U
8
1_555
C
K
202
F
K
K
1_555
F
HOH
218
L
O
HOH
1_555
159.3
C
HOH
207
K
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
218
L
O
HOH
1_555
102.8
F
HOH
208
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
218
L
O
HOH
1_555
95.9
F
HOH
209
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
218
L
O
HOH
1_555
98.2
F
HOH
211
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
218
L
O
HOH
1_555
40.6
C
U
7
A
O4
U
8
1_555
C
K
202
F
K
K
1_555
F
HOH
219
L
O
HOH
1_555
101.2
C
HOH
207
K
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
219
L
O
HOH
1_555
75.5
F
HOH
208
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
219
L
O
HOH
1_555
52.1
F
HOH
209
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
219
L
O
HOH
1_555
106.8
F
HOH
211
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
219
L
O
HOH
1_555
90.9
F
HOH
218
L
O
HOH
1_555
C
K
202
F
K
K
1_555
F
HOH
219
L
O
HOH
1_555
58.5
F
G
24
B
O6
G
7
1_555
F
K
203
G
K
K
1_555
F
G
24
B
N7
G
7
1_555
69.4
F
G
24
B
O6
G
7
1_555
F
K
203
G
K
K
1_555
F
HOH
210
L
O
HOH
1_555
80.1
F
G
24
B
N7
G
7
1_555
F
K
203
G
K
K
1_555
F
HOH
210
L
O
HOH
1_555
70.1
F
G
24
B
O6
G
7
1_555
F
K
203
G
K
K
1_555
F
HOH
219
L
O
HOH
1_555
65.7
F
G
24
B
N7
G
7
1_555
F
K
203
G
K
K
1_555
F
HOH
219
L
O
HOH
1_555
122.1
F
HOH
210
L
O
HOH
1_555
F
K
203
G
K
K
1_555
F
HOH
219
L
O
HOH
1_555
132.0
F
G
24
B
O6
G
7
1_555
F
K
203
G
K
K
1_555
F
HOH
221
L
O
HOH
1_555
61.0
F
G
24
B
N7
G
7
1_555
F
K
203
G
K
K
1_555
F
HOH
221
L
O
HOH
1_555
121.4
F
HOH
210
L
O
HOH
1_555
F
K
203
G
K
K
1_555
F
HOH
221
L
O
HOH
1_555
72.4
F
HOH
219
L
O
HOH
1_555
F
K
203
G
K
K
1_555
F
HOH
221
L
O
HOH
1_555
62.0
D
U
7
C
O4
U
8
1_555
D
K
201
H
K
K
1_555
D
HOH
235
M
O
HOH
1_555
82.2
D
U
7
C
O4
U
8
1_555
D
K
201
H
K
K
1_555
D
HOH
237
M
O
HOH
1_555
145.6
D
HOH
235
M
O
HOH
1_555
D
K
201
H
K
K
1_555
D
HOH
237
M
O
HOH
1_555
103.4
D
U
7
C
O4
U
8
1_555
D
K
201
H
K
K
1_555
D
HOH
241
M
O
HOH
1_555
96.3
D
HOH
235
M
O
HOH
1_555
D
K
201
H
K
K
1_555
D
HOH
241
M
O
HOH
1_555
171.9
D
HOH
237
M
O
HOH
1_555
D
K
201
H
K
K
1_555
D
HOH
241
M
O
HOH
1_555
82.3
D
G
14
C
O6
G
15
1_555
D
K
205
J
K
K
1_555
D
HOH
233
M
O
HOH
1_555
72.1
D
G
14
C
O6
G
15
1_555
D
K
205
J
K
K
1_555
D
HOH
234
M
O
HOH
1_555
61.4
D
HOH
233
M
O
HOH
1_555
D
K
205
J
K
K
1_555
D
HOH
234
M
O
HOH
1_555
112.4
D
G
24
C
O6
G
25
1_555
D
K
204
I
K
K
1_555
D
G
24
C
N7
G
25
1_555
66.0
D
G
24
C
O6
G
25
1_555
D
K
204
I
K
K
1_555
D
HOH
206
M
O
HOH
1_555
121.7
D
G
24
C
N7
G
25
1_555
D
K
204
I
K
K
1_555
D
HOH
206
M
O
HOH
1_555
97.6
C
A23
17
A
A23
18
A
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
9
D
N
GLN
9
A
O
GLU
18
D
O
GLU
18
A
O
HIS
49
D
O
HIS
49
A
N
GLU
95
D
N
GLU
95
A
O
PHE
96
D
O
PHE
96
A
N
VAL
121
D
N
VAL
121
A
O
ILE
122
D
O
ILE
122
A
N
CYS
131
D
N
CYS
131
A
O
ARG
138
D
O
ARG
138
A
N
GLN
141
D
N
GLN
141
B
O
GLN
9
E
O
GLN
9
B
N
GLU
18
E
N
GLU
18
B
O
HIS
49
E
O
HIS
49
B
N
GLU
95
E
N
GLU
95
B
O
PHE
96
E
O
PHE
96
B
N
VAL
121
E
N
VAL
121
B
O
ILE
122
E
O
ILE
122
B
N
CYS
131
E
N
CYS
131
B
O
ARG
138
E
O
ARG
138
B
N
GLN
141
E
N
GLN
141
1
A
SER
46
89.62
-0.04
1
A
LEU
61
-48.01
158.89
1
A
LYS
63
72.29
105.46
1
A
LYS
111
38.31
65.74
1
B
THR
14
96.73
102.28
1
B
ASN
15
-57.03
41.33
1
B
THR
43
-38.01
164.93
1
B
SER
46
78.37
-1.33
1
B
LYS
63
-39.71
129.88
1
B
ARG
77
-170.85
126.47
1
B
PRO
78
-39.59
135.68
1
B
LYS
80
-119.43
79.23
1
B
LYS
111
8.53
103.88
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA-ALLATOM.PARAM
DNA-RNA-ALLATOM.TOP
ION.PARAM
ION.TOP
WATER_REP.PARAM
WATER.TOP
50.02
0.40
0.000
13.90
-3.96
0.000
3.56
Electron density around A17 in chain C indicates
a mixture of multiple conformations. Only the cleaved
conformation has been modeled, and some water molecules
around A17 in chain C may represent the alternative
conformation(s) of A17.
0.29
0.006
0.232
0.238
0.238
2.15
19.96
2437
28101
24648
9.9
88.4
random
1
isotropic
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
PDB entry 1aqz
CNS parameter file
flat model
40.7006
0.318052
0.47
0.36
5.0
0.60
0.52
2.15
19.96
168
3883
5
1328
2382
0.006381
1.29824
25.0
0.77
1.58
1.50
2.57
2.00
2.03
2.00
2.93
2.50
0.426
0.023
0.417
2.28
337
2879
6
10.5
69.2
51.8
2.15
500
1JBR
28101
24648
0
0
0.048
1
24.2
2.66
96.6
0.465
2.15
2.19
2.37
1277
2.16
92.4
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
GLN
26
D
GLN
26
HELX_P
A
ALA
36
D
ALA
36
1
1
11
A
LYS
72
D
LYS
72
HELX_P
A
ARG
77
D
ARG
77
1
2
6
B
GLN
26
E
GLN
26
HELX_P
B
ALA
36
E
ALA
36
1
3
11
disulf
2.036
A
CYS
5
D
SG
CYS
5
1_555
A
CYS
147
D
SG
CYS
147
1_555
disulf
2.041
A
CYS
75
D
SG
CYS
75
1_555
A
CYS
131
D
SG
CYS
131
1_555
disulf
2.048
B
CYS
5
E
SG
CYS
5
1_555
B
CYS
147
E
SG
CYS
147
1_555
disulf
2.048
B
CYS
75
E
SG
CYS
75
1_555
B
CYS
131
E
SG
CYS
131
1_555
covale
1.616
both
C
G
16
A
O3'
G
17
1_555
C
A23
17
A
P
A23
18
1_555
metalc
2.782
C
U
7
A
O4
U
8
1_555
C
K
202
F
K
K
1_555
metalc
2.881
C
K
202
F
K
K
1_555
C
HOH
207
K
O
HOH
1_555
metalc
3.431
C
K
202
F
K
K
1_555
F
HOH
208
L
O
HOH
1_555
metalc
2.837
C
K
202
F
K
K
1_555
F
HOH
209
L
O
HOH
1_555
metalc
3.591
C
K
202
F
K
K
1_555
F
HOH
211
L
O
HOH
1_555
metalc
2.873
C
K
202
F
K
K
1_555
F
HOH
218
L
O
HOH
1_555
metalc
3.063
C
K
202
F
K
K
1_555
F
HOH
219
L
O
HOH
1_555
metalc
2.705
F
G
24
B
O6
G
7
1_555
F
K
203
G
K
K
1_555
metalc
2.719
F
G
24
B
N7
G
7
1_555
F
K
203
G
K
K
1_555
metalc
2.824
F
K
203
G
K
K
1_555
F
HOH
210
L
O
HOH
1_555
metalc
3.210
F
K
203
G
K
K
1_555
F
HOH
219
L
O
HOH
1_555
metalc
2.660
F
K
203
G
K
K
1_555
F
HOH
221
L
O
HOH
1_555
metalc
2.629
D
U
7
C
O4
U
8
1_555
D
K
201
H
K
K
1_555
metalc
2.521
D
G
14
C
O6
G
15
1_555
D
K
205
J
K
K
1_555
metalc
2.689
D
G
24
C
O6
G
25
1_555
D
K
204
I
K
K
1_555
metalc
2.959
D
G
24
C
N7
G
25
1_555
D
K
204
I
K
K
1_555
metalc
2.773
D
K
201
H
K
K
1_555
D
HOH
235
M
O
HOH
1_555
metalc
2.743
D
K
201
H
K
K
1_555
D
HOH
237
M
O
HOH
1_555
metalc
2.758
D
K
201
H
K
K
1_555
D
HOH
241
M
O
HOH
1_555
metalc
2.875
D
K
204
I
K
K
1_555
D
HOH
206
M
O
HOH
1_555
metalc
2.659
D
K
205
J
K
K
1_555
D
HOH
233
M
O
HOH
1_555
metalc
3.138
D
K
205
J
K
K
1_555
D
HOH
234
M
O
HOH
1_555
hydrog
WATSON-CRICK
C
G
0
A
N1
G
1
1_555
F
C
30
B
N3
C
13
1_555
hydrog
WATSON-CRICK
C
G
0
A
N2
G
1
1_555
F
C
30
B
O2
C
13
1_555
hydrog
WATSON-CRICK
C
G
0
A
O6
G
1
1_555
F
C
30
B
N4
C
13
1_555
hydrog
WATSON-CRICK
C
C
1
A
N3
C
2
1_555
F
G
29
B
N1
G
12
1_555
hydrog
WATSON-CRICK
C
C
1
A
N4
C
2
1_555
F
G
29
B
O6
G
12
1_555
hydrog
WATSON-CRICK
C
C
1
A
O2
C
2
1_555
F
G
29
B
N2
G
12
1_555
hydrog
WATSON-CRICK
C
G
2
A
N1
G
3
1_555
F
C
28
B
N3
C
11
1_555
hydrog
WATSON-CRICK
C
G
2
A
N2
G
3
1_555
F
C
28
B
O2
C
11
1_555
hydrog
WATSON-CRICK
C
G
2
A
O6
G
3
1_555
F
C
28
B
N4
C
11
1_555
hydrog
WATSON-CRICK
C
C
3
A
N3
C
4
1_555
F
G
27
B
N1
G
10
1_555
hydrog
WATSON-CRICK
C
C
3
A
N4
C
4
1_555
F
G
27
B
O6
G
10
1_555
hydrog
WATSON-CRICK
C
C
3
A
O2
C
4
1_555
F
G
27
B
N2
G
10
1_555
hydrog
WATSON-CRICK
C
U
4
A
N3
U
5
1_555
F
A
26
B
N1
A
9
1_555
hydrog
WATSON-CRICK
C
U
4
A
O4
U
5
1_555
F
A
26
B
N6
A
9
1_555
hydrog
WATSON-CRICK
C
C
5
A
N3
C
6
1_555
F
G
25
B
N1
G
8
1_555
hydrog
WATSON-CRICK
C
C
5
A
N4
C
6
1_555
F
G
25
B
O6
G
8
1_555
hydrog
WATSON-CRICK
C
C
5
A
O2
C
6
1_555
F
G
25
B
N2
G
8
1_555
hydrog
WATSON-CRICK
C
C
6
A
N3
C
7
1_555
F
G
24
B
N1
G
7
1_555
hydrog
WATSON-CRICK
C
C
6
A
N4
C
7
1_555
F
G
24
B
O6
G
7
1_555
hydrog
WATSON-CRICK
C
C
6
A
O2
C
7
1_555
F
G
24
B
N2
G
7
1_555
hydrog
U-C MISPAIR
C
U
7
A
O2
U
8
1_555
F
C
23
B
N4
C
6
1_555
hydrog
C-C MISPAIR
C
C
8
A
O2
C
9
1_555
F
C
22
B
N4
C
5
1_555
hydrog
TYPE_2_PAIR
C
A
9
A
N6
A
10
1_555
F
A
21
B
N7
A
4
1_555
hydrog
TYPE_2_PAIR
C
A
9
A
N7
A
10
1_555
F
A
21
B
N6
A
4
1_555
hydrog
G-U MISPAIR
C
G
10
A
N2
G
11
1_555
C
U
11
A
O4
U
12
1_555
hydrog
REVERSED HOOGSTEEN
C
U
11
A
N3
U
12
1_555
F
A
20
B
N7
A
3
1_555
hydrog
REVERSED HOOGSTEEN
C
U
11
A
O2
U
12
1_555
F
A
20
B
N6
A
3
1_555
hydrog
TYPE_11_PAIR
C
A
12
A
N6
A
13
1_555
F
G
19
B
N3
G
2
1_555
hydrog
TYPE_11_PAIR
C
A
12
A
N7
A
13
1_555
F
G
19
B
N2
G
2
1_555
hydrog
WATSON-CRICK
C
C
13
A
N3
C
14
1_555
F
G
18
B
N1
G
1
1_555
hydrog
WATSON-CRICK
C
C
13
A
N4
C
14
1_555
F
G
18
B
O6
G
1
1_555
hydrog
WATSON-CRICK
C
C
13
A
O2
C
14
1_555
F
G
18
B
N2
G
1
1_555
hydrog
WATSON-CRICK
D
G
0
C
N1
G
1
1_555
D
C
30
C
N3
C
31
1_555
hydrog
WATSON-CRICK
D
G
0
C
N2
G
1
1_555
D
C
30
C
O2
C
31
1_555
hydrog
WATSON-CRICK
D
G
0
C
O6
G
1
1_555
D
C
30
C
N4
C
31
1_555
hydrog
WATSON-CRICK
D
C
1
C
N3
C
2
1_555
D
G
29
C
N1
G
30
1_555
hydrog
WATSON-CRICK
D
C
1
C
N4
C
2
1_555
D
G
29
C
O6
G
30
1_555
hydrog
WATSON-CRICK
D
C
1
C
O2
C
2
1_555
D
G
29
C
N2
G
30
1_555
hydrog
WATSON-CRICK
D
G
2
C
N1
G
3
1_555
D
C
28
C
N3
C
29
1_555
hydrog
WATSON-CRICK
D
G
2
C
N2
G
3
1_555
D
C
28
C
O2
C
29
1_555
hydrog
WATSON-CRICK
D
G
2
C
O6
G
3
1_555
D
C
28
C
N4
C
29
1_555
hydrog
WATSON-CRICK
D
C
3
C
N3
C
4
1_555
D
G
27
C
N1
G
28
1_555
hydrog
WATSON-CRICK
D
C
3
C
N4
C
4
1_555
D
G
27
C
O6
G
28
1_555
hydrog
WATSON-CRICK
D
C
3
C
O2
C
4
1_555
D
G
27
C
N2
G
28
1_555
hydrog
WATSON-CRICK
D
U
4
C
N3
U
5
1_555
D
A
26
C
N1
A
27
1_555
hydrog
WATSON-CRICK
D
U
4
C
O4
U
5
1_555
D
A
26
C
N6
A
27
1_555
hydrog
WATSON-CRICK
D
C
5
C
N3
C
6
1_555
D
G
25
C
N1
G
26
1_555
hydrog
WATSON-CRICK
D
C
5
C
N4
C
6
1_555
D
G
25
C
O6
G
26
1_555
hydrog
WATSON-CRICK
D
C
5
C
O2
C
6
1_555
D
G
25
C
N2
G
26
1_555
hydrog
WATSON-CRICK
D
C
6
C
N3
C
7
1_555
D
G
24
C
N1
G
25
1_555
hydrog
WATSON-CRICK
D
C
6
C
N4
C
7
1_555
D
G
24
C
O6
G
25
1_555
hydrog
WATSON-CRICK
D
C
6
C
O2
C
7
1_555
D
G
24
C
N2
G
25
1_555
hydrog
U-C MISPAIR
D
U
7
C
O2
U
8
1_555
D
C
23
C
N4
C
24
1_555
hydrog
C-C MISPAIR
D
C
8
C
O2
C
9
1_555
D
C
22
C
N4
C
23
1_555
hydrog
TYPE_2_PAIR
D
A
9
C
N6
A
10
1_555
D
A
21
C
N7
A
22
1_555
hydrog
TYPE_2_PAIR
D
A
9
C
N7
A
10
1_555
D
A
21
C
N6
A
22
1_555
hydrog
G-U MISPAIR
D
G
10
C
N2
G
11
1_555
D
U
11
C
O4
U
12
1_555
hydrog
U-A PAIR
D
U
11
C
N3
U
12
1_555
D
A
20
C
N7
A
21
1_555
hydrog
TYPE_11_PAIR
D
A
12
C
N6
A
13
1_555
D
G
19
C
N3
G
20
1_555
hydrog
TYPE_11_PAIR
D
A
12
C
N7
A
13
1_555
D
G
19
C
N2
G
20
1_555
hydrog
WATSON-CRICK
D
C
13
C
N3
C
14
1_555
D
G
18
C
N1
G
19
1_555
hydrog
WATSON-CRICK
D
C
13
C
N4
C
14
1_555
D
G
18
C
O6
G
19
1_555
hydrog
WATSON-CRICK
D
C
13
C
O2
C
14
1_555
D
G
18
C
N2
G
19
1_555
HYDROLASE/RNA
protein-RNA interaction, specific recognition, restrictocin, ribosomal RNA, sarcin/ricin domain, base flipping, HYDROLASE-RNA COMPLEX
A
TYR
47
D
TYR
47
1
A
PRO
48
D
PRO
48
0.36
A
LYS
111
D
LYS
111
1
A
PRO
112
D
PRO
112
-0.43
A
TYR
125
D
TYR
125
1
A
PRO
126
D
PRO
126
1.94
B
TYR
47
E
TYR
47
1
B
PRO
48
E
PRO
48
-0.04
B
LYS
111
E
LYS
111
1
B
PRO
112
E
PRO
112
-0.45
B
TYR
125
E
TYR
125
1
B
PRO
126
E
PRO
126
0.76
RNMG_ASPRE
UNP
4
28
P67876
1JBR
PDB
1
1JBR
1JBR
PDB
2
1JBR
1JBR
PDB
3
1JBR
28
176
1JBR
1
149
P67876
A
1
1
149
28
176
1JBR
1
149
P67876
B
1
1
149
0
17
1JBR
0
17
1JBR
C
2
1
18
18
30
1JBR
18
30
1JBR
F
3
1
13
0
30
1JBR
0
30
1JBR
D
4
1
31
2
5
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
2
D
THR
2
A
LEU
10
D
LEU
10
A
TRP
17
D
TRP
17
A
SER
25
D
SER
25
A
HIS
49
D
HIS
49
A
TRP
50
D
TRP
50
A
TYR
92
D
TYR
92
A
PRO
97
D
PRO
97
A
ALA
119
D
ALA
119
A
TYR
125
D
TYR
125
A
PHE
130
D
PHE
130
A
ARG
138
D
ARG
138
A
GLN
141
D
GLN
141
A
LEU
146
D
LEU
146
B
THR
2
E
THR
2
B
LEU
10
E
LEU
10
B
TRP
17
E
TRP
17
B
SER
25
E
SER
25
B
HIS
49
E
HIS
49
B
TRP
50
E
TRP
50
B
TYR
92
E
TYR
92
B
PRO
97
E
PRO
97
B
ALA
119
E
ALA
119
B
TYR
125
E
TYR
125
B
PHE
130
E
PHE
130
B
ARG
138
E
ARG
138
B
GLN
141
E
GLN
141
B
LEU
146
E
LEU
146
BINDING SITE FOR RESIDUE K D 201
D
K
201
Software
4
BINDING SITE FOR RESIDUE K C 202
C
K
202
Software
5
BINDING SITE FOR RESIDUE K F 203
F
K
203
Software
3
BINDING SITE FOR RESIDUE K D 204
D
K
204
Software
2
BINDING SITE FOR RESIDUE K D 205
D
K
205
Software
2
D
U
7
C
U
8
4
1_555
D
HOH
235
M
HOH
4
1_555
D
HOH
237
M
HOH
4
1_555
D
HOH
241
M
HOH
4
1_555
C
U
7
A
U
8
5
1_555
C
HOH
207
K
HOH
5
1_555
F
HOH
209
L
HOH
5
1_555
F
HOH
218
L
HOH
5
1_555
F
HOH
219
L
HOH
5
1_555
F
G
24
B
G
7
3
1_555
F
HOH
210
L
HOH
3
1_555
F
HOH
221
L
HOH
3
1_555
D
G
24
C
G
25
2
1_555
D
HOH
206
M
HOH
2
1_555
D
G
14
C
G
15
2
1_555
D
HOH
233
M
HOH
2
1_555
4
P 1 21 1