0.013041
0.000000
0.000000
0.000000
0.008398
0.000000
0.000000
0.000000
0.006448
0.000000
0.000000
0.000000
Kamada, K.
Shu, F.
Chen, H.
Malik, S.
Stelzer, G.
Roeder, R.G.
Meisterernst, M.
0000-0002-2487-9713
Burley, S.K.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
76.684
119.075
155.076
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
106
71
81
10.1016/S0092-8674(01)00417-2
11461703
Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex.
2001
0000-0002-2487-9713
10.2210/pdb1jfi/pdb
pdb_00001jfi
100
1
VERTICAL FOCUSING MIRROR
CCD
2000-07-02
SBC-2
ROSENBAUM-ROCK MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
0.98400
1.0
19-ID
APS
0.98400
SYNCHROTRON
APS BEAMLINE 19-ID
19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE TOP STRAND
5844.796
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3'
1
syn
polymer
19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE BOTTOM STRAND
5804.773
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3'
1
syn
polymer
10813.676
Transcription Regulator NC2 alpha chain
RESIDUES 1-77
1
man
polymer
19755.947
Transcription Regulator NC2 beta chain
1
man
polymer
20856.729
TATA-BOX-BINDING PROTEIN (TBP)
RESIDUES 359-539
1
man
polymer
18.015
water
9
nat
water
DR1 PROTEIN
Transcription Initiation Factor TFIID
no
no
(DT)(DT)(DG)(DG)(DC)(DT)(DA)(DT)(DA)(DA)(DA)(DA)(DG)(DG)(DG)(DC)(DT)(DC)(DC)
TTGGCTATAAAAGGGCTCC
D
polydeoxyribonucleotide
no
no
(DG)(DG)(DA)(DG)(DC)(DC)(DC)(DT)(DT)(DT)(DT)(DA)(DT)(DA)(DG)(DC)(DC)(DA)(DA)
GGAGCCCTTTTATAGCCAA
E
polydeoxyribonucleotide
no
no
MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDP
AANKARKEAELAAATAEQ
MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDP
AANKARKEAELAAATAEQ
A
NYSGXRC-P048a
polypeptide(L)
no
no
GPHMASSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES
LGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAAS
ASASNQAGSSQDEEDDDDI
GPHMASSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES
LGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAAS
ASASNQAGSSQDEEDDDDI
B
polypeptide(L)
no
no
GSHMSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAA
RKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
AKVRAEIYEAFENIYPILKGFRKTT
GSHMSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAA
RKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
AKVRAEIYEAFENIYPILKGFRKTT
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
NC2 alpha (DRAP1)
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
His tag eliminated. coexpressed with NC2 beta
pET11d
human
Homo
Escherichia
Escherichia coli
sample
NC2 beta (Dr1)
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
coexpressed with NC2 alpha
pET28a
human
Homo
Escherichia
Escherichia coli
sample
tbp
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
codon usage is optimized for this gene
pET15b
1
2.79
55.84
VAPOR DIFFUSION, HANGING DROP
5.5
PEG 4000, sodium citrate, potassium chloride, magnesium chloride, DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
PEG 4000
1
sodium citrate
1
KCl
1
MgCl2
1
DTT
1
0.777
1
20
D
602
E
718
-1.585
D_DT602:DA718_E
1
-9.363
-0.211
-0.299
-0.125
8.073
1
19
D
603
E
717
1.001
D_DG603:DC717_E
2
-4.894
0.184
0.213
0.008
-3.756
1
19
D
604
E
716
-5.032
D_DG604:DC716_E
3
-5.869
-0.369
-0.143
-0.190
-10.704
1
19
D
605
E
715
-2.958
D_DC605:DG715_E
4
-4.881
0.018
0.228
-0.116
-10.930
1
20
D
606
E
714
13.308
D_DT606:DA714_E
5
7.819
0.330
-0.055
-0.094
-35.597
1
20
D
607
E
713
11.049
D_DA607:DT713_E
6
14.493
0.227
-0.001
0.044
-27.514
1
20
D
608
E
712
-6.791
D_DT608:DA712_E
7
-7.256
-0.107
-0.177
-0.226
-1.738
1
20
D
609
E
711
-2.611
D_DA609:DT711_E
8
-0.482
0.081
-0.690
-0.277
21.669
1
20
D
610
E
710
0.723
D_DA610:DT710_E
9
6.032
0.250
0.202
-0.135
27.278
1
20
D
611
E
709
0.681
D_DA611:DT709_E
10
-2.257
-0.233
-0.171
-0.077
37.686
1
20
D
612
E
708
7.902
D_DA612:DT708_E
11
-8.285
0.058
0.182
-0.017
11.378
1
19
D
613
E
707
4.691
D_DG613:DC707_E
12
9.567
1.133
-0.085
-0.049
20.436
1
19
D
614
E
706
-4.319
D_DG614:DC706_E
13
-6.201
0.841
-0.292
-0.276
-8.721
1
19
D
615
E
705
-7.564
D_DG615:DC705_E
14
-9.259
0.161
-0.803
-0.283
-8.172
1
19
D
616
E
704
3.888
D_DC616:DG704_E
15
-0.749
-0.013
-0.146
-0.043
2.546
1
20
D
617
E
703
-5.265
D_DT617:DA703_E
16
-16.378
0.242
-0.223
0.018
6.889
1
19
D
618
E
702
2.952
D_DC618:DG702_E
17
-6.580
-0.947
-0.600
0.251
2.850
30.996
D
D
602
603
19.230
E
E
718
717
3.120
10.068
0.772
0.066
DD_DT602DG603:DC717DA718_EE
1
-4.141
7.909
29.065
-1.708
-2.197
3.150
32.758
D
D
603
604
15.203
E
E
717
716
3.428
8.480
-0.689
-0.740
DD_DG603DG604:DC716DC717_EE
2
-1.026
1.840
31.654
-2.807
1.042
3.325
39.260
D
D
604
605
4.132
E
E
716
715
3.404
2.773
0.187
-0.921
DD_DG604DC605:DG715DC716_EE
3
-1.469
2.188
39.139
-1.711
-0.458
3.499
37.563
D
D
605
606
8.685
E
E
715
714
3.284
5.549
1.865
-0.058
DD_DC605DT606:DA714DG715_EE
4
6.266
-9.807
36.651
-0.851
-2.038
0.875
46.765
D
D
606
607
68.753
E
E
714
713
4.115
43.377
0.312
-0.803
DD_DT606DA607:DT713DA714_EE
5
2.634
-4.175
17.711
-5.179
-0.140
1.579
33.608
D
D
607
608
58.386
E
E
713
712
3.562
28.342
-1.629
-0.066
DD_DA607DT608:DA712DT713_EE
6
5.051
-10.405
17.527
-4.987
3.685
3.452
27.408
D
D
608
609
22.243
E
E
712
711
2.886
10.279
0.197
2.071
DD_DT608DA609:DT711DA712_EE
7
2.165
-4.686
25.351
1.809
0.124
2.380
26.797
D
D
609
610
64.495
E
E
711
710
3.101
23.892
0.526
1.336
DD_DA609DA610:DT710DT711_EE
8
-5.117
13.814
11.086
-4.537
-2.723
3.222
26.607
D
D
610
611
49.890
E
E
710
709
3.698
20.169
-0.342
1.198
DD_DA610DA611:DT709DT710_EE
9
4.009
-9.916
16.976
-4.290
2.113
3.073
31.976
D
D
611
612
42.141
E
E
709
708
3.371
21.293
0.468
0.785
DD_DA611DA612:DT708DT709_EE
10
1.236
-2.447
23.962
-2.951
-0.596
3.375
48.358
D
D
612
613
56.826
E
E
708
707
4.652
40.075
-0.042
0.830
DD_DA612DG613:DC707DT708_EE
11
2.407
-3.413
27.532
-4.022
0.353
3.261
32.372
D
D
613
614
9.550
E
E
707
706
3.308
5.295
-1.104
0.650
DD_DG613DG614:DC706DC707_EE
12
2.876
-5.187
31.821
0.220
2.495
2.920
34.598
D
D
614
615
29.006
E
E
706
705
4.005
16.578
-0.268
-1.305
DD_DG614DG615:DC705DC706_EE
13
0.985
-1.723
30.459
-5.087
0.623
2.876
34.952
D
D
615
616
12.724
E
E
705
704
3.151
7.578
1.054
-0.555
DD_DG615DC616:DG704DC705_EE
14
-2.700
4.533
34.042
-1.993
-2.136
3.244
31.357
D
D
616
617
7.762
E
E
704
703
3.268
4.183
-1.786
0.048
DD_DC616DT617:DA703DG704_EE
15
0.048
-0.089
31.083
-0.698
3.314
3.415
36.334
D
D
617
618
12.476
E
E
703
702
3.282
7.709
0.854
0.636
DD_DT617DC618:DG702DA703_EE
16
4.054
-6.561
35.309
-0.098
-0.782
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
audit_author
citation_author
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Structure summary
Data collection
Database references
Refinement description
1
0
2001-07-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-02-03
1
4
2023-08-16
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
RCSB
Y
RCSB
2001-06-20
REL
REL
HOH
water
1CDW
PDB ENTRY 1CDW
PDB
experimental model
HOH
1005
6
HOH
HOH
1005
D
HOH
1001
6
HOH
HOH
1001
A
HOH
1003
6
HOH
HOH
1003
B
HOH
1002
6
HOH
HOH
1002
C
HOH
1004
6
HOH
HOH
1004
C
HOH
1006
6
HOH
HOH
1006
C
HOH
1007
6
HOH
HOH
1007
C
HOH
1008
6
HOH
HOH
1008
C
HOH
1009
6
HOH
HOH
1009
C
T
601
n
1
DT
601
D
T
602
n
2
DT
602
D
G
603
n
3
DG
603
D
G
604
n
4
DG
604
D
C
605
n
5
DC
605
D
T
606
n
6
DT
606
D
A
607
n
7
DA
607
D
T
608
n
8
DT
608
D
A
609
n
9
DA
609
D
A
610
n
10
DA
610
D
A
611
n
11
DA
611
D
A
612
n
12
DA
612
D
G
613
n
13
DG
613
D
G
614
n
14
DG
614
D
G
615
n
15
DG
615
D
C
616
n
16
DC
616
D
T
617
n
17
DT
617
D
C
618
n
18
DC
618
D
n
19
619
D
n
1
701
E
G
702
n
2
DG
702
E
A
703
n
3
DA
703
E
G
704
n
4
DG
704
E
C
705
n
5
DC
705
E
C
706
n
6
DC
706
E
C
707
n
7
DC
707
E
T
708
n
8
DT
708
E
T
709
n
9
DT
709
E
T
710
n
10
DT
710
E
T
711
n
11
DT
711
E
A
712
n
12
DA
712
E
T
713
n
13
DT
713
E
A
714
n
14
DA
714
E
G
715
n
15
DG
715
E
C
716
n
16
DC
716
E
C
717
n
17
DC
717
E
A
718
n
18
DA
718
E
A
719
n
19
DA
719
E
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
ALA
10
n
10
ALA
10
A
ARG
11
n
11
ARG
11
A
PHE
12
n
12
PHE
12
A
PRO
13
n
13
PRO
13
A
PRO
14
n
14
PRO
14
A
ALA
15
n
15
ALA
15
A
ARG
16
n
16
ARG
16
A
ILE
17
n
17
ILE
17
A
LYS
18
n
18
LYS
18
A
LYS
19
n
19
LYS
19
A
ILE
20
n
20
ILE
20
A
MET
21
n
21
MET
21
A
GLN
22
n
22
GLN
22
A
THR
23
n
23
THR
23
A
ASP
24
n
24
ASP
24
A
GLU
25
n
25
GLU
25
A
GLU
26
n
26
GLU
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
LYS
29
n
29
LYS
29
A
VAL
30
n
30
VAL
30
A
ALA
31
n
31
ALA
31
A
ALA
32
n
32
ALA
32
A
ALA
33
n
33
ALA
33
A
VAL
34
n
34
VAL
34
A
PRO
35
n
35
PRO
35
A
VAL
36
n
36
VAL
36
A
ILE
37
n
37
ILE
37
A
ILE
38
n
38
ILE
38
A
SER
39
n
39
SER
39
A
ARG
40
n
40
ARG
40
A
ALA
41
n
41
ALA
41
A
LEU
42
n
42
LEU
42
A
GLU
43
n
43
GLU
43
A
LEU
44
n
44
LEU
44
A
PHE
45
n
45
PHE
45
A
LEU
46
n
46
LEU
46
A
GLU
47
n
47
GLU
47
A
SER
48
n
48
SER
48
A
LEU
49
n
49
LEU
49
A
LEU
50
n
50
LEU
50
A
LYS
51
n
51
LYS
51
A
LYS
52
n
52
LYS
52
A
ALA
53
n
53
ALA
53
A
CYS
54
n
54
CYS
54
A
GLN
55
n
55
GLN
55
A
VAL
56
n
56
VAL
56
A
THR
57
n
57
THR
57
A
GLN
58
n
58
GLN
58
A
SER
59
n
59
SER
59
A
ARG
60
n
60
ARG
60
A
n
61
61
A
n
62
62
A
n
63
63
A
THR
64
n
64
THR
64
A
MET
65
n
65
MET
65
A
THR
66
n
66
THR
66
A
THR
67
n
67
THR
67
A
SER
68
n
68
SER
68
A
HIS
69
n
69
HIS
69
A
LEU
70
n
70
LEU
70
A
LYS
71
n
71
LYS
71
A
GLN
72
n
72
GLN
72
A
CYS
73
n
73
CYS
73
A
ILE
74
n
74
ILE
74
A
GLU
75
n
75
GLU
75
A
n
76
76
A
n
77
77
A
n
78
78
A
n
79
79
A
n
80
80
A
n
81
81
A
n
82
82
A
n
83
83
A
n
84
84
A
n
85
85
A
n
86
86
A
n
87
87
A
n
88
88
A
n
89
89
A
n
90
90
A
n
91
91
A
n
92
92
A
n
93
93
A
n
94
94
A
n
95
95
A
n
96
96
A
n
97
97
A
n
98
98
A
n
1
98
B
n
2
99
B
n
3
100
B
n
4
101
B
n
5
102
B
n
6
103
B
n
7
104
B
n
8
105
B
n
9
106
B
n
10
107
B
n
11
108
B
ASP
109
n
12
ASP
109
B
ASP
110
n
13
ASP
110
B
LEU
111
n
14
LEU
111
B
THR
112
n
15
THR
112
B
ILE
113
n
16
ILE
113
B
PRO
114
n
17
PRO
114
B
ARG
115
n
18
ARG
115
B
ALA
116
n
19
ALA
116
B
ALA
117
n
20
ALA
117
B
ILE
118
n
21
ILE
118
B
ASN
119
n
22
ASN
119
B
LYS
120
n
23
LYS
120
B
MET
121
n
24
MET
121
B
ILE
122
n
25
ILE
122
B
LYS
123
n
26
LYS
123
B
GLU
124
n
27
GLU
124
B
THR
125
n
28
THR
125
B
LEU
126
n
29
LEU
126
B
PRO
127
n
30
PRO
127
B
ASN
128
n
31
ASN
128
B
VAL
129
n
32
VAL
129
B
ARG
130
n
33
ARG
130
B
VAL
131
n
34
VAL
131
B
ALA
132
n
35
ALA
132
B
ASN
133
n
36
ASN
133
B
ASP
134
n
37
ASP
134
B
ALA
135
n
38
ALA
135
B
ARG
136
n
39
ARG
136
B
GLU
137
n
40
GLU
137
B
LEU
138
n
41
LEU
138
B
VAL
139
n
42
VAL
139
B
VAL
140
n
43
VAL
140
B
ASN
141
n
44
ASN
141
B
CYS
142
n
45
CYS
142
B
CYS
143
n
46
CYS
143
B
THR
144
n
47
THR
144
B
GLU
145
n
48
GLU
145
B
PHE
146
n
49
PHE
146
B
ILE
147
n
50
ILE
147
B
HIS
148
n
51
HIS
148
B
LEU
149
n
52
LEU
149
B
ILE
150
n
53
ILE
150
B
SER
151
n
54
SER
151
B
SER
152
n
55
SER
152
B
GLU
153
n
56
GLU
153
B
ALA
154
n
57
ALA
154
B
ASN
155
n
58
ASN
155
B
GLU
156
n
59
GLU
156
B
ILE
157
n
60
ILE
157
B
CYS
158
n
61
CYS
158
B
ASN
159
n
62
ASN
159
B
LYS
160
n
63
LYS
160
B
SER
161
n
64
SER
161
B
GLU
162
n
65
GLU
162
B
LYS
163
n
66
LYS
163
B
LYS
164
n
67
LYS
164
B
THR
165
n
68
THR
165
B
ILE
166
n
69
ILE
166
B
SER
167
n
70
SER
167
B
PRO
168
n
71
PRO
168
B
GLU
169
n
72
GLU
169
B
HIS
170
n
73
HIS
170
B
VAL
171
n
74
VAL
171
B
ILE
172
n
75
ILE
172
B
GLN
173
n
76
GLN
173
B
ALA
174
n
77
ALA
174
B
LEU
175
n
78
LEU
175
B
GLU
176
n
79
GLU
176
B
SER
177
n
80
SER
177
B
LEU
178
n
81
LEU
178
B
GLY
179
n
82
GLY
179
B
PHE
180
n
83
PHE
180
B
GLY
181
n
84
GLY
181
B
SER
182
n
85
SER
182
B
TYR
183
n
86
TYR
183
B
ILE
184
n
87
ILE
184
B
SER
185
n
88
SER
185
B
GLU
186
n
89
GLU
186
B
VAL
187
n
90
VAL
187
B
LYS
188
n
91
LYS
188
B
GLU
189
n
92
GLU
189
B
VAL
190
n
93
VAL
190
B
LEU
191
n
94
LEU
191
B
GLN
192
n
95
GLN
192
B
GLU
193
n
96
GLU
193
B
CYS
194
n
97
CYS
194
B
LYS
195
n
98
LYS
195
B
THR
196
n
99
THR
196
B
VAL
197
n
100
VAL
197
B
ALA
198
n
101
ALA
198
B
LEU
199
n
102
LEU
199
B
LYS
200
n
103
LYS
200
B
ARG
201
n
104
ARG
201
B
ARG
202
n
105
ARG
202
B
LYS
203
n
106
LYS
203
B
ALA
204
n
107
ALA
204
B
SER
205
n
108
SER
205
B
SER
206
n
109
SER
206
B
ARG
207
n
110
ARG
207
B
LEU
208
n
111
LEU
208
B
GLU
209
n
112
GLU
209
B
ASN
210
n
113
ASN
210
B
LEU
211
n
114
LEU
211
B
GLY
212
n
115
GLY
212
B
ILE
213
n
116
ILE
213
B
PRO
214
n
117
PRO
214
B
GLU
215
n
118
GLU
215
B
GLU
216
n
119
GLU
216
B
GLU
217
n
120
GLU
217
B
LEU
218
n
121
LEU
218
B
LEU
219
n
122
LEU
219
B
ARG
220
n
123
ARG
220
B
GLN
221
n
124
GLN
221
B
GLN
222
n
125
GLN
222
B
GLN
223
n
126
GLN
223
B
GLU
224
n
127
GLU
224
B
LEU
225
n
128
LEU
225
B
PHE
226
n
129
PHE
226
B
ALA
227
n
130
ALA
227
B
LYS
228
n
131
LYS
228
B
ALA
229
n
132
ALA
229
B
ARG
230
n
133
ARG
230
B
GLN
231
n
134
GLN
231
B
GLN
232
n
135
GLN
232
B
GLN
233
n
136
GLN
233
B
ALA
234
n
137
ALA
234
B
GLU
235
n
138
GLU
235
B
LEU
236
n
139
LEU
236
B
ALA
237
n
140
ALA
237
B
GLN
238
n
141
GLN
238
B
GLN
239
n
142
GLN
239
B
GLU
240
n
143
GLU
240
B
TRP
241
n
144
TRP
241
B
LEU
242
n
145
LEU
242
B
GLN
243
n
146
GLN
243
B
n
147
244
B
n
148
245
B
n
149
246
B
n
150
247
B
n
151
248
B
n
152
249
B
n
153
250
B
n
154
251
B
n
155
252
B
n
156
253
B
n
157
254
B
n
158
255
B
n
159
256
B
n
160
257
B
n
161
258
B
n
162
259
B
n
163
260
B
n
164
261
B
n
165
262
B
n
166
263
B
n
167
264
B
n
168
265
B
n
169
266
B
n
170
267
B
n
171
268
B
n
172
269
B
n
173
270
B
n
174
271
B
n
175
272
B
n
176
273
B
n
177
274
B
n
178
275
B
n
179
276
B
n
1
355
C
SER
356
n
2
SER
356
C
HIS
357
n
3
HIS
357
C
MET
358
n
4
MET
358
C
SER
359
n
5
SER
359
C
GLY
360
n
6
GLY
360
C
ILE
361
n
7
ILE
361
C
VAL
362
n
8
VAL
362
C
PRO
363
n
9
PRO
363
C
GLN
364
n
10
GLN
364
C
LEU
365
n
11
LEU
365
C
GLN
366
n
12
GLN
366
C
ASN
367
n
13
ASN
367
C
ILE
368
n
14
ILE
368
C
VAL
369
n
15
VAL
369
C
SER
370
n
16
SER
370
C
THR
371
n
17
THR
371
C
VAL
372
n
18
VAL
372
C
ASN
373
n
19
ASN
373
C
LEU
374
n
20
LEU
374
C
GLY
375
n
21
GLY
375
C
CYS
376
n
22
CYS
376
C
LYS
377
n
23
LYS
377
C
LEU
378
n
24
LEU
378
C
ASP
379
n
25
ASP
379
C
LEU
380
n
26
LEU
380
C
LYS
381
n
27
LYS
381
C
THR
382
n
28
THR
382
C
ILE
383
n
29
ILE
383
C
ALA
384
n
30
ALA
384
C
LEU
385
n
31
LEU
385
C
ARG
386
n
32
ARG
386
C
ALA
387
n
33
ALA
387
C
ARG
388
n
34
ARG
388
C
ASN
389
n
35
ASN
389
C
ALA
390
n
36
ALA
390
C
GLU
391
n
37
GLU
391
C
TYR
392
n
38
TYR
392
C
ASN
393
n
39
ASN
393
C
PRO
394
n
40
PRO
394
C
LYS
395
n
41
LYS
395
C
ARG
396
n
42
ARG
396
C
PHE
397
n
43
PHE
397
C
ALA
398
n
44
ALA
398
C
ALA
399
n
45
ALA
399
C
VAL
400
n
46
VAL
400
C
ILE
401
n
47
ILE
401
C
MET
402
n
48
MET
402
C
ARG
403
n
49
ARG
403
C
ILE
404
n
50
ILE
404
C
ARG
405
n
51
ARG
405
C
GLU
406
n
52
GLU
406
C
PRO
407
n
53
PRO
407
C
ARG
408
n
54
ARG
408
C
THR
409
n
55
THR
409
C
THR
410
n
56
THR
410
C
ALA
411
n
57
ALA
411
C
LEU
412
n
58
LEU
412
C
ILE
413
n
59
ILE
413
C
PHE
414
n
60
PHE
414
C
SER
415
n
61
SER
415
C
SER
416
n
62
SER
416
C
GLY
417
n
63
GLY
417
C
LYS
418
n
64
LYS
418
C
MET
419
n
65
MET
419
C
VAL
420
n
66
VAL
420
C
CYS
421
n
67
CYS
421
C
THR
422
n
68
THR
422
C
GLY
423
n
69
GLY
423
C
ALA
424
n
70
ALA
424
C
LYS
425
n
71
LYS
425
C
SER
426
n
72
SER
426
C
GLU
427
n
73
GLU
427
C
GLU
428
n
74
GLU
428
C
GLN
429
n
75
GLN
429
C
SER
430
n
76
SER
430
C
ARG
431
n
77
ARG
431
C
LEU
432
n
78
LEU
432
C
ALA
433
n
79
ALA
433
C
ALA
434
n
80
ALA
434
C
ARG
435
n
81
ARG
435
C
LYS
436
n
82
LYS
436
C
TYR
437
n
83
TYR
437
C
ALA
438
n
84
ALA
438
C
ARG
439
n
85
ARG
439
C
VAL
440
n
86
VAL
440
C
VAL
441
n
87
VAL
441
C
GLN
442
n
88
GLN
442
C
LYS
443
n
89
LYS
443
C
LEU
444
n
90
LEU
444
C
GLY
445
n
91
GLY
445
C
PHE
446
n
92
PHE
446
C
PRO
447
n
93
PRO
447
C
ALA
448
n
94
ALA
448
C
LYS
449
n
95
LYS
449
C
PHE
450
n
96
PHE
450
C
LEU
451
n
97
LEU
451
C
ASP
452
n
98
ASP
452
C
PHE
453
n
99
PHE
453
C
LYS
454
n
100
LYS
454
C
ILE
455
n
101
ILE
455
C
GLN
456
n
102
GLN
456
C
ASN
457
n
103
ASN
457
C
MET
458
n
104
MET
458
C
VAL
459
n
105
VAL
459
C
GLY
460
n
106
GLY
460
C
SER
461
n
107
SER
461
C
CYS
462
n
108
CYS
462
C
ASP
463
n
109
ASP
463
C
VAL
464
n
110
VAL
464
C
LYS
465
n
111
LYS
465
C
PHE
466
n
112
PHE
466
C
PRO
467
n
113
PRO
467
C
ILE
468
n
114
ILE
468
C
ARG
469
n
115
ARG
469
C
LEU
470
n
116
LEU
470
C
GLU
471
n
117
GLU
471
C
GLY
472
n
118
GLY
472
C
LEU
473
n
119
LEU
473
C
VAL
474
n
120
VAL
474
C
LEU
475
n
121
LEU
475
C
THR
476
n
122
THR
476
C
HIS
477
n
123
HIS
477
C
GLN
478
n
124
GLN
478
C
GLN
479
n
125
GLN
479
C
PHE
480
n
126
PHE
480
C
SER
481
n
127
SER
481
C
SER
482
n
128
SER
482
C
TYR
483
n
129
TYR
483
C
GLU
484
n
130
GLU
484
C
PRO
485
n
131
PRO
485
C
GLU
486
n
132
GLU
486
C
LEU
487
n
133
LEU
487
C
PHE
488
n
134
PHE
488
C
PRO
489
n
135
PRO
489
C
GLY
490
n
136
GLY
490
C
LEU
491
n
137
LEU
491
C
ILE
492
n
138
ILE
492
C
TYR
493
n
139
TYR
493
C
ARG
494
n
140
ARG
494
C
MET
495
n
141
MET
495
C
ILE
496
n
142
ILE
496
C
LYS
497
n
143
LYS
497
C
PRO
498
n
144
PRO
498
C
ARG
499
n
145
ARG
499
C
ILE
500
n
146
ILE
500
C
VAL
501
n
147
VAL
501
C
LEU
502
n
148
LEU
502
C
LEU
503
n
149
LEU
503
C
ILE
504
n
150
ILE
504
C
PHE
505
n
151
PHE
505
C
VAL
506
n
152
VAL
506
C
SER
507
n
153
SER
507
C
GLY
508
n
154
GLY
508
C
LYS
509
n
155
LYS
509
C
VAL
510
n
156
VAL
510
C
VAL
511
n
157
VAL
511
C
LEU
512
n
158
LEU
512
C
THR
513
n
159
THR
513
C
GLY
514
n
160
GLY
514
C
ALA
515
n
161
ALA
515
C
LYS
516
n
162
LYS
516
C
VAL
517
n
163
VAL
517
C
ARG
518
n
164
ARG
518
C
ALA
519
n
165
ALA
519
C
GLU
520
n
166
GLU
520
C
ILE
521
n
167
ILE
521
C
TYR
522
n
168
TYR
522
C
GLU
523
n
169
GLU
523
C
ALA
524
n
170
ALA
524
C
PHE
525
n
171
PHE
525
C
GLU
526
n
172
GLU
526
C
ASN
527
n
173
ASN
527
C
ILE
528
n
174
ILE
528
C
TYR
529
n
175
TYR
529
C
PRO
530
n
176
PRO
530
C
ILE
531
n
177
ILE
531
C
LEU
532
n
178
LEU
532
C
LYS
533
n
179
LYS
533
C
GLY
534
n
180
GLY
534
C
PHE
535
n
181
PHE
535
C
ARG
536
n
182
ARG
536
C
LYS
537
n
183
LYS
537
C
THR
538
n
184
THR
538
C
n
185
539
C
author_defined_assembly
5
pentameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
C
O
ASN
393
E
O
ASN
39
C
N
PHE
397
E
N
PHE
43
C
O
ILE
404
E
O
ILE
50
C
N
THR
410
E
N
THR
56
C
N
LEU
412
E
N
LEU
58
C
O
VAL
420
E
O
VAL
66
C
O
CYS
421
E
O
CYS
67
C
N
SER
370
E
N
SER
16
C
N
ASN
373
E
N
ASN
19
C
O
LEU
451
E
O
LEU
97
C
O
CYS
462
E
O
CYS
108
C
N
VAL
511
E
N
VAL
157
C
O
THR
513
E
O
THR
159
C
N
VAL
501
E
N
VAL
147
C
O
ILE
504
E
O
ILE
150
C
N
LEU
491
E
N
LEU
137
C
N
ILE
492
E
N
ILE
138
C
O
SER
482
E
O
SER
128
1
E
P
DG
702
B
P
DG
2
1
Y
1
E
OP1
DG
702
B
OP1
DG
2
1
Y
1
E
OP2
DG
702
B
OP2
DG
2
1
Y
1
B
CG
TRP
241
D
CG
TRP
144
1
Y
1
B
CD1
TRP
241
D
CD1
TRP
144
1
Y
1
B
CD2
TRP
241
D
CD2
TRP
144
1
Y
1
B
NE1
TRP
241
D
NE1
TRP
144
1
Y
1
B
CE2
TRP
241
D
CE2
TRP
144
1
Y
1
B
CE3
TRP
241
D
CE3
TRP
144
1
Y
1
B
CZ2
TRP
241
D
CZ2
TRP
144
1
Y
1
B
CZ3
TRP
241
D
CZ3
TRP
144
1
Y
1
B
CH2
TRP
241
D
CH2
TRP
144
1
Y
1
B
CG
LEU
242
D
CG
LEU
145
1
Y
1
B
CD1
LEU
242
D
CD1
LEU
145
1
Y
1
B
CD2
LEU
242
D
CD2
LEU
145
1
Y
1
B
CG
GLN
243
D
CG
GLN
146
1
Y
1
B
CD
GLN
243
D
CD
GLN
146
1
Y
1
B
OE1
GLN
243
D
OE1
GLN
146
1
Y
1
B
NE2
GLN
243
D
NE2
GLN
146
1
Y
1
D
DC
619
A
DC
19
1
Y
1
E
DG
701
B
DG
1
1
Y
1
A
MET
1
C
MET
1
1
Y
1
A
PRO
2
C
PRO
2
1
Y
1
A
SER
3
C
SER
3
1
Y
1
A
LYS
4
C
LYS
4
1
Y
1
A
LYS
5
C
LYS
5
1
Y
1
A
LYS
6
C
LYS
6
1
Y
1
A
LYS
7
C
LYS
7
1
Y
1
A
TYR
8
C
TYR
8
1
Y
1
A
ASN
9
C
ASN
9
1
Y
1
A
ASN
61
C
ASN
61
1
Y
1
A
ALA
62
C
ALA
62
1
Y
1
A
LYS
63
C
LYS
63
1
Y
1
A
LEU
76
C
LEU
76
1
Y
1
A
GLU
77
C
GLU
77
1
Y
1
A
GLY
78
C
GLY
78
1
Y
1
A
ASP
79
C
ASP
79
1
Y
1
A
PRO
80
C
PRO
80
1
Y
1
A
ALA
81
C
ALA
81
1
Y
1
A
ALA
82
C
ALA
82
1
Y
1
A
ASN
83
C
ASN
83
1
Y
1
A
LYS
84
C
LYS
84
1
Y
1
A
ALA
85
C
ALA
85
1
Y
1
A
ARG
86
C
ARG
86
1
Y
1
A
LYS
87
C
LYS
87
1
Y
1
A
GLU
88
C
GLU
88
1
Y
1
A
ALA
89
C
ALA
89
1
Y
1
A
GLU
90
C
GLU
90
1
Y
1
A
LEU
91
C
LEU
91
1
Y
1
A
ALA
92
C
ALA
92
1
Y
1
A
ALA
93
C
ALA
93
1
Y
1
A
ALA
94
C
ALA
94
1
Y
1
A
THR
95
C
THR
95
1
Y
1
A
ALA
96
C
ALA
96
1
Y
1
A
GLU
97
C
GLU
97
1
Y
1
A
GLN
98
C
GLN
98
1
Y
1
B
GLY
98
D
GLY
1
1
Y
1
B
PRO
99
D
PRO
2
1
Y
1
B
HIS
100
D
HIS
3
1
Y
1
B
MET
101
D
MET
4
1
Y
1
B
ALA
102
D
ALA
5
1
Y
1
B
SER
103
D
SER
6
1
Y
1
B
SER
104
D
SER
7
1
Y
1
B
SER
105
D
SER
8
1
Y
1
B
GLY
106
D
GLY
9
1
Y
1
B
ASN
107
D
ASN
10
1
Y
1
B
ASP
108
D
ASP
11
1
Y
1
B
MET
244
D
MET
147
1
Y
1
B
GLN
245
D
GLN
148
1
Y
1
B
GLN
246
D
GLN
149
1
Y
1
B
ALA
247
D
ALA
150
1
Y
1
B
ALA
248
D
ALA
151
1
Y
1
B
GLN
249
D
GLN
152
1
Y
1
B
GLN
250
D
GLN
153
1
Y
1
B
ALA
251
D
ALA
154
1
Y
1
B
GLN
252
D
GLN
155
1
Y
1
B
LEU
253
D
LEU
156
1
Y
1
B
ALA
254
D
ALA
157
1
Y
1
B
ALA
255
D
ALA
158
1
Y
1
B
ALA
256
D
ALA
159
1
Y
1
B
SER
257
D
SER
160
1
Y
1
B
ALA
258
D
ALA
161
1
Y
1
B
SER
259
D
SER
162
1
Y
1
B
ALA
260
D
ALA
163
1
Y
1
B
SER
261
D
SER
164
1
Y
1
B
ASN
262
D
ASN
165
1
Y
1
B
GLN
263
D
GLN
166
1
Y
1
B
ALA
264
D
ALA
167
1
Y
1
B
GLY
265
D
GLY
168
1
Y
1
B
SER
266
D
SER
169
1
Y
1
B
SER
267
D
SER
170
1
Y
1
B
GLN
268
D
GLN
171
1
Y
1
B
ASP
269
D
ASP
172
1
Y
1
B
GLU
270
D
GLU
173
1
Y
1
B
GLU
271
D
GLU
174
1
Y
1
B
ASP
272
D
ASP
175
1
Y
1
B
ASP
273
D
ASP
176
1
Y
1
B
ASP
274
D
ASP
177
1
Y
1
B
ASP
275
D
ASP
178
1
Y
1
B
ILE
276
D
ILE
179
1
Y
1
C
GLY
355
E
GLY
1
1
Y
1
C
THR
539
E
THR
185
1
Y
1
D
DG
604
0.096
SIDE CHAIN
1
D
DC
605
0.083
SIDE CHAIN
1
D
DT
606
0.097
SIDE CHAIN
1
D
DA
612
0.058
SIDE CHAIN
1
E
DA
712
0.057
SIDE CHAIN
1
E
DT
713
0.073
SIDE CHAIN
1
C
C
NH2
NH2
ARG
ARG
386
386
1.88
1_555
3_755
1
A
PRO
13
-53.54
102.60
1
A
GLN
72
-70.55
20.19
1
B
LEU
126
-111.54
72.42
1
B
ASN
128
73.98
55.55
1
B
SER
161
-70.18
23.15
1
B
GLU
162
41.56
24.73
1
B
ILE
166
-55.42
109.92
1
B
ILE
184
-47.31
-18.25
1
C
CYS
376
-177.94
133.82
1
C
ARG
388
-51.14
-81.84
1
C
ARG
408
-59.22
109.11
1
C
PRO
447
-67.14
61.20
1
C
PHE
466
178.28
134.02
1
C
PRO
467
-49.85
156.99
1
C
VAL
506
-38.39
-35.39
61.53
-16.66
0.00
0.00
21.02
0.00
-4.36
0.2770000
0.007
0.2330000
0.2390000
0.2360000
2.62
19.84
1499
21653
21084
7.1
97.4
1.00
1.00
RANDOM
1
isotropic
THROUGHOUT
2
0
MOLECULAR REPLACEMENT
PDB ENTRY 1CDW
Engh & Huber
CNS bulk solvent model used
29.7687
0.302265
0.44
0.37
5.00
0.46
0.42
2.62
19.84
9
3743
0
732
3002
0.006
1.3
20.7
1.10
0.3530000
0.027
0.3600000
2.74
177
2387
8
6.7
90.1
0.3290000
0.024
0.3330000
2.88
192
2572
8
7.2
96.1
0.2810000
0.021
0.2830000
3.06
173
2622
8
6.5
97.8
0.2950000
0.021
0.2940000
3.30
193
2627
8
7.2
98.3
0.2550000
0.019
0.2520000
3.63
178
2667
8
6.6
99.0
0.2250000
0.016
0.2220000
4.15
186
2697
8
6.9
99.4
0.1790000
0.013
0.1790000
5.21
201
2719
8
7.4
99.7
0.2070000
0.015
0.2080000
19.84
199
2793
8
7.0
98.4
78.4
2.62
20.0
1JFI
21406
21406
0
-3.0
0.0580000
0.0580000
1
19.6
6.7
98.4
0.3120000
2.62
2.71
1952
0.3120000
5.2
91.6
refinement
Axel T. Brunger
axel.brunger@yale.edu
1998
Fortran
CNS
package
0.9
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Crystal Structure of the NC2-TBP-DNA Ternary Complex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
PRO
13
C
PRO
13
HELX_P
A
GLN
22
C
GLN
22
1
1
10
A
ALA
32
C
ALA
32
HELX_P
A
GLN
58
C
GLN
58
1
2
27
A
THR
66
C
THR
66
HELX_P
A
GLN
72
C
GLN
72
1
3
7
B
PRO
114
D
PRO
17
HELX_P
B
LEU
126
D
LEU
29
1
4
13
B
ALA
132
D
ALA
35
HELX_P
B
SER
161
D
SER
64
1
5
30
B
SER
167
D
SER
70
HELX_P
B
GLY
179
D
GLY
82
1
6
13
B
PHE
180
D
PHE
83
HELX_P
B
SER
182
D
SER
85
5
7
3
B
TYR
183
D
TYR
86
HELX_P
B
GLU
209
D
GLU
112
1
8
27
B
PRO
214
D
PRO
117
HELX_P
B
LEU
242
D
LEU
145
1
9
29
C
ASP
379
E
ASP
25
HELX_P
C
ALA
387
E
ALA
33
1
10
9
C
SER
426
E
SER
72
HELX_P
C
LEU
444
E
LEU
90
1
11
19
C
ARG
469
E
ARG
115
HELX_P
C
HIS
477
E
HIS
123
1
12
9
C
VAL
517
E
VAL
163
HELX_P
C
GLY
534
E
GLY
180
1
13
18
hydrog
WATSON-CRICK
D
DT
602
A
N3
DT
2
1_555
E
DA
718
B
N1
DA
18
1_555
hydrog
WATSON-CRICK
D
DT
602
A
O4
DT
2
1_555
E
DA
718
B
N6
DA
18
1_555
hydrog
WATSON-CRICK
D
DG
603
A
N1
DG
3
1_555
E
DC
717
B
N3
DC
17
1_555
hydrog
WATSON-CRICK
D
DG
603
A
N2
DG
3
1_555
E
DC
717
B
O2
DC
17
1_555
hydrog
WATSON-CRICK
D
DG
603
A
O6
DG
3
1_555
E
DC
717
B
N4
DC
17
1_555
hydrog
WATSON-CRICK
D
DG
604
A
N1
DG
4
1_555
E
DC
716
B
N3
DC
16
1_555
hydrog
WATSON-CRICK
D
DG
604
A
N2
DG
4
1_555
E
DC
716
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
D
DG
604
A
O6
DG
4
1_555
E
DC
716
B
N4
DC
16
1_555
hydrog
WATSON-CRICK
D
DC
605
A
N3
DC
5
1_555
E
DG
715
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
D
DC
605
A
N4
DC
5
1_555
E
DG
715
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
D
DC
605
A
O2
DC
5
1_555
E
DG
715
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
D
DT
606
A
N3
DT
6
1_555
E
DA
714
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
D
DT
606
A
O4
DT
6
1_555
E
DA
714
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
D
DA
607
A
N1
DA
7
1_555
E
DT
713
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
D
DA
607
A
N6
DA
7
1_555
E
DT
713
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
D
DT
608
A
N3
DT
8
1_555
E
DA
712
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
D
DT
608
A
O4
DT
8
1_555
E
DA
712
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
D
DA
609
A
N1
DA
9
1_555
E
DT
711
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
D
DA
609
A
N6
DA
9
1_555
E
DT
711
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
D
DA
610
A
N1
DA
10
1_555
E
DT
710
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
D
DA
610
A
N6
DA
10
1_555
E
DT
710
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
D
DA
611
A
N1
DA
11
1_555
E
DT
709
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
D
DA
611
A
N6
DA
11
1_555
E
DT
709
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
D
DA
612
A
N1
DA
12
1_555
E
DT
708
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
D
DA
612
A
N6
DA
12
1_555
E
DT
708
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
D
DG
613
A
N1
DG
13
1_555
E
DC
707
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
613
A
N2
DG
13
1_555
E
DC
707
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
613
A
O6
DG
13
1_555
E
DC
707
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
614
A
N1
DG
14
1_555
E
DC
706
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
614
A
N2
DG
14
1_555
E
DC
706
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
614
A
O6
DG
14
1_555
E
DC
706
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
615
A
N1
DG
15
1_555
E
DC
705
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
615
A
N2
DG
15
1_555
E
DC
705
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
D
DG
615
A
O6
DG
15
1_555
E
DC
705
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
D
DC
616
A
N3
DC
16
1_555
E
DG
704
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
D
DC
616
A
N4
DC
16
1_555
E
DG
704
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
D
DC
616
A
O2
DC
16
1_555
E
DG
704
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
D
DT
617
A
N3
DT
17
1_555
E
DA
703
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
D
DT
617
A
O4
DT
17
1_555
E
DA
703
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
D
DC
618
A
N3
DC
18
1_555
E
DG
702
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
D
DC
618
A
N4
DC
18
1_555
E
DG
702
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
D
DC
618
A
O2
DC
18
1_555
E
DG
702
B
N2
DG
2
1_555
TRANSCRIPTION/DNA
Histone, H2A/H2B, TBP, TATA-DNA, transcription initiation, NC2, Negative Cofactor, Structural Genomics, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, TRANSCRIPTION-DNA COMPLEX
C
GLU
406
E
GLU
52
1
C
PRO
407
E
PRO
53
-0.39
C
LYS
497
E
LYS
143
1
C
PRO
498
E
PRO
144
0.24
DRAP1_HUMAN
UNP
3
1
Q14919
MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELE
TBAP_HUMAN
UNP
4
1
Q01658
MASSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGF
GSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASA
SNQAGSSQDEEDDDDI
TBP_HUMAN
UNP
5
159
P20226
SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYA
RVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVR
AEIYEAFENIYPILKGFRKTT
1JFI
PDB
1
1JFI
1JFI
PDB
2
1JFI
1
77
1JFI
1
77
Q14919
A
1
1
77
1
176
1JFI
101
276
Q01658
B
2
4
179
159
339
1JFI
359
539
P20226
C
3
5
185
601
619
1JFI
601
619
1JFI
D
4
1
19
701
719
1JFI
701
719
1JFI
E
5
1
19
1
cloning artifact
GLY
78
1JFI
A
Q14919
UNP
78
1
cloning artifact
ASP
79
1JFI
A
Q14919
UNP
79
1
cloning artifact
PRO
80
1JFI
A
Q14919
UNP
80
1
cloning artifact
ALA
81
1JFI
A
Q14919
UNP
81
1
cloning artifact
ALA
82
1JFI
A
Q14919
UNP
82
1
cloning artifact
ASN
83
1JFI
A
Q14919
UNP
83
1
cloning artifact
LYS
84
1JFI
A
Q14919
UNP
84
1
cloning artifact
ALA
85
1JFI
A
Q14919
UNP
85
1
cloning artifact
ARG
86
1JFI
A
Q14919
UNP
86
1
cloning artifact
LYS
87
1JFI
A
Q14919
UNP
87
1
cloning artifact
GLU
88
1JFI
A
Q14919
UNP
88
1
cloning artifact
ALA
89
1JFI
A
Q14919
UNP
89
1
cloning artifact
GLU
90
1JFI
A
Q14919
UNP
90
1
cloning artifact
LEU
91
1JFI
A
Q14919
UNP
91
1
cloning artifact
ALA
92
1JFI
A
Q14919
UNP
92
1
cloning artifact
ALA
93
1JFI
A
Q14919
UNP
93
1
cloning artifact
ALA
94
1JFI
A
Q14919
UNP
94
1
cloning artifact
THR
95
1JFI
A
Q14919
UNP
95
1
cloning artifact
ALA
96
1JFI
A
Q14919
UNP
96
1
cloning artifact
GLU
97
1JFI
A
Q14919
UNP
97
1
cloning artifact
GLN
98
1JFI
A
Q14919
UNP
98
2
cloning artifact
GLY
98
1JFI
B
Q01658
UNP
1
2
cloning artifact
PRO
99
1JFI
B
Q01658
UNP
2
2
cloning artifact
HIS
100
1JFI
B
Q01658
UNP
3
3
cloning artifact
GLY
355
1JFI
C
P20226
UNP
1
3
cloning artifact
SER
356
1JFI
C
P20226
UNP
2
3
cloning artifact
HIS
357
1JFI
C
P20226
UNP
3
3
cloning artifact
MET
358
1JFI
C
P20226
UNP
4
10
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
C
ALA
390
E
ALA
36
C
ASN
393
E
ASN
39
C
PHE
397
E
PHE
43
C
ILE
404
E
ILE
50
C
THR
410
E
THR
56
C
ILE
413
E
ILE
59
C
LYS
418
E
LYS
64
C
THR
422
E
THR
68
C
GLN
364
E
GLN
10
C
ASN
373
E
ASN
19
C
LEU
451
E
LEU
97
C
ASP
463
E
ASP
109
C
LYS
509
E
LYS
155
C
ALA
515
E
ALA
161
C
VAL
501
E
VAL
147
C
ILE
504
E
ILE
150
C
LEU
491
E
LEU
137
C
ARG
494
E
ARG
140
C
SER
482
E
SER
128
C
SER
482
E
SER
128
20
C 2 2 21