0.026177
-0.000000
0.000000
0.000000
0.019040
0.000000
0.000000
0.000000
0.010403
0.00000
0.00000
0.00000
Griffith, S.C.
Sawaya, M.R.
Boutz, D.
Thapar, N.
Katz, J.
Clarke, S.
Yeates, T.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.201
52.522
96.129
C10 H13 N5 O4
267.241
ADENOSINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
R
C
N
4
N
O
N
5
S
C
N
6
N
O
N
7
R
C
N
8
N
O
N
9
R
C
Y
10
N
N
Y
11
N
C
Y
12
N
N
Y
13
N
C
Y
14
N
C
N
15
N
N
Y
16
N
N
Y
17
N
C
Y
18
N
N
Y
19
N
C
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
N
N
34
S
C
N
35
N
C
N
36
N
O
N
37
N
C
N
38
N
O
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
N
N
47
S
C
N
48
N
C
N
49
N
O
N
50
N
C
N
51
N
C
N
52
N
C
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
N
N
74
S
C
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
N
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
N
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
Y
160
N
C
Y
161
N
N
Y
162
N
C
Y
163
N
C
Y
164
N
N
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
S
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
N
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
S
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
NA
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
R
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
N
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
Y
20
N
sing
Y
21
N
sing
Y
22
N
doub
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
doub
N
29
N
sing
N
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
Y
161
N
sing
Y
162
N
doub
Y
163
N
doub
N
164
N
sing
Y
165
N
sing
N
166
N
sing
Y
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
313
1103
1116
10.1006/jmbi.2001.5095
11700066
Crystal structure of a protein repair methyltransferase from Pyrococcus furiosus with its L-isoaspartyl peptide substrate.
2001
10.2210/pdb1jg2/pdb
pdb_00001jg2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
118
1
CCD
2000-10-10
ADSC QUANTUM 4
mirror
SINGLE WAVELENGTH
M
x-ray
1
1.1000
1.0
X8C
NSLS
1.1000
SYNCHROTRON
NSLS BEAMLINE X8C
26613.090
protein-L-isoaspartate O-methyltransferase
2.1.1.77
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
267.241
ADENOSINE
1
syn
non-polymer
18.015
water
130
nat
water
PROTEIN-BETA-ASPARTATE METHYLTRANSFERASE; PIMT; PROTEIN L-ISOASPARTYL METHYLTRANSFERASE; L-ISOASPARTYL PROTEIN CARBOXYL METHYLTRANSFERASE
E.C.2.1.1.77
no
no
MHLYSSDFPLMMDEKELYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMV
AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD
VIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKIKNHGGVAFVPLIGEYGWKEHHHHHH
MHLYSSDFPLMMDEKELYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMV
AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD
VIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKIKNHGGVAFVPLIGEYGWKEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pyrococcus
Escherichia
sample
2261
Pyrococcus furiosus
562
Escherichia coli
1
1.81
32.07
VAPOR DIFFUSION, HANGING DROP
4.5
25% PEG 2000, 15% Glycerol, 0.2 M Ammonium Acetate pH 4.5,
VAPOR DIFFUSION, HANGING DROP at 298K
298
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-11-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2001-06-22
REL
REL
NA
SODIUM ION
ADN
ADENOSINE
HOH
water
NA
229
2
NA
NA
236
A
ADN
500
3
ADN
ADN
500
A
HOH
1001
4
HOH
HOH
1001
A
HOH
1002
4
HOH
HOH
1002
A
HOH
1003
4
HOH
HOH
1003
A
HOH
1004
4
HOH
HOH
1004
A
HOH
1005
4
HOH
HOH
1005
A
HOH
1006
4
HOH
HOH
1006
A
HOH
1007
4
HOH
HOH
1007
A
HOH
1008
4
HOH
HOH
1008
A
HOH
1009
4
HOH
HOH
1009
A
HOH
1010
4
HOH
HOH
1010
A
HOH
1011
4
HOH
HOH
1011
A
HOH
1012
4
HOH
HOH
1012
A
HOH
1013
4
HOH
HOH
1013
A
HOH
1014
4
HOH
HOH
1014
A
HOH
1015
4
HOH
HOH
1015
A
HOH
1016
4
HOH
HOH
1016
A
HOH
1017
4
HOH
HOH
1017
A
HOH
1018
4
HOH
HOH
1018
A
HOH
1019
4
HOH
HOH
1019
A
HOH
1020
4
HOH
HOH
1020
A
HOH
1021
4
HOH
HOH
1021
A
HOH
1022
4
HOH
HOH
1022
A
HOH
1023
4
HOH
HOH
1023
A
HOH
1024
4
HOH
HOH
1024
A
HOH
1025
4
HOH
HOH
1025
A
HOH
1026
4
HOH
HOH
1026
A
HOH
1027
4
HOH
HOH
1027
A
HOH
1028
4
HOH
HOH
1028
A
HOH
1029
4
HOH
HOH
1029
A
HOH
1030
4
HOH
HOH
1030
A
HOH
1031
4
HOH
HOH
1031
A
HOH
1032
4
HOH
HOH
1032
A
HOH
1033
4
HOH
HOH
1033
A
HOH
1034
4
HOH
HOH
1034
A
HOH
1035
4
HOH
HOH
1035
A
HOH
1036
4
HOH
HOH
1036
A
HOH
1037
4
HOH
HOH
1037
A
HOH
1038
4
HOH
HOH
1038
A
HOH
1039
4
HOH
HOH
1039
A
HOH
1040
4
HOH
HOH
1040
A
HOH
1041
4
HOH
HOH
1041
A
HOH
1042
4
HOH
HOH
1042
A
HOH
1043
4
HOH
HOH
1043
A
HOH
1044
4
HOH
HOH
1044
A
HOH
1045
4
HOH
HOH
1045
A
HOH
1046
4
HOH
HOH
1046
A
HOH
1047
4
HOH
HOH
1047
A
HOH
1048
4
HOH
HOH
1048
A
HOH
1049
4
HOH
HOH
1049
A
HOH
1050
4
HOH
HOH
1050
A
HOH
1051
4
HOH
HOH
1051
A
HOH
1052
4
HOH
HOH
1052
A
HOH
1053
4
HOH
HOH
1053
A
HOH
1054
4
HOH
HOH
1054
A
HOH
1055
4
HOH
HOH
1055
A
HOH
1056
4
HOH
HOH
1056
A
HOH
1057
4
HOH
HOH
1057
A
HOH
1058
4
HOH
HOH
1058
A
HOH
1059
4
HOH
HOH
1059
A
HOH
1060
4
HOH
HOH
1060
A
HOH
1061
4
HOH
HOH
1061
A
HOH
1062
4
HOH
HOH
1062
A
HOH
1063
4
HOH
HOH
1063
A
HOH
1064
4
HOH
HOH
1064
A
HOH
1065
4
HOH
HOH
1065
A
HOH
1066
4
HOH
HOH
1066
A
HOH
1067
4
HOH
HOH
1067
A
HOH
1068
4
HOH
HOH
1068
A
HOH
1069
4
HOH
HOH
1069
A
HOH
1070
4
HOH
HOH
1070
A
HOH
1071
4
HOH
HOH
1071
A
HOH
1072
4
HOH
HOH
1072
A
HOH
1073
4
HOH
HOH
1073
A
HOH
1074
4
HOH
HOH
1074
A
HOH
1075
4
HOH
HOH
1075
A
HOH
1076
4
HOH
HOH
1076
A
HOH
1077
4
HOH
HOH
1077
A
HOH
1078
4
HOH
HOH
1078
A
HOH
1079
4
HOH
HOH
1079
A
HOH
1080
4
HOH
HOH
1080
A
HOH
1081
4
HOH
HOH
1081
A
HOH
1082
4
HOH
HOH
1082
A
HOH
1083
4
HOH
HOH
1083
A
HOH
1084
4
HOH
HOH
1084
A
HOH
1085
4
HOH
HOH
1085
A
HOH
1086
4
HOH
HOH
1086
A
HOH
1087
4
HOH
HOH
1087
A
HOH
1088
4
HOH
HOH
1088
A
HOH
1089
4
HOH
HOH
1089
A
HOH
1090
4
HOH
HOH
1090
A
HOH
1091
4
HOH
HOH
1091
A
HOH
1092
4
HOH
HOH
1092
A
HOH
1093
4
HOH
HOH
1093
A
HOH
1094
4
HOH
HOH
1094
A
HOH
1095
4
HOH
HOH
1095
A
HOH
1096
4
HOH
HOH
1096
A
HOH
1097
4
HOH
HOH
1097
A
HOH
1098
4
HOH
HOH
1098
A
HOH
1099
4
HOH
HOH
1099
A
HOH
1100
4
HOH
HOH
1100
A
HOH
1101
4
HOH
HOH
1101
A
HOH
1102
4
HOH
HOH
1102
A
HOH
1103
4
HOH
HOH
1103
A
HOH
1104
4
HOH
HOH
1104
A
HOH
1105
4
HOH
HOH
1105
A
HOH
1106
4
HOH
HOH
1106
A
HOH
1107
4
HOH
HOH
1107
A
HOH
1108
4
HOH
HOH
1108
A
HOH
1109
4
HOH
HOH
1109
A
HOH
1110
4
HOH
HOH
1110
A
HOH
1111
4
HOH
HOH
1111
A
HOH
1112
4
HOH
HOH
1112
A
HOH
1113
4
HOH
HOH
1113
A
HOH
1114
4
HOH
HOH
1114
A
HOH
1115
4
HOH
HOH
1115
A
HOH
1116
4
HOH
HOH
1116
A
HOH
1117
4
HOH
HOH
1117
A
HOH
1118
4
HOH
HOH
1118
A
HOH
1119
4
HOH
HOH
1119
A
HOH
1120
4
HOH
HOH
1120
A
HOH
1121
4
HOH
HOH
1121
A
HOH
1122
4
HOH
HOH
1122
A
HOH
1123
4
HOH
HOH
1123
A
HOH
1124
4
HOH
HOH
1124
A
HOH
1125
4
HOH
HOH
1125
A
HOH
1126
4
HOH
HOH
1126
A
HOH
1127
4
HOH
HOH
1127
A
HOH
1128
4
HOH
HOH
1128
A
HOH
1129
4
HOH
HOH
1129
A
HOH
1130
4
HOH
HOH
1130
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
GLU
14
n
14
GLU
14
A
LYS
15
n
15
LYS
15
A
GLU
16
n
16
GLU
16
A
LEU
17
n
17
LEU
17
A
TYR
18
n
18
TYR
18
A
GLU
19
n
19
GLU
19
A
LYS
20
n
20
LYS
20
A
TRP
21
n
21
TRP
21
A
MET
22
n
22
MET
22
A
ARG
23
n
23
ARG
23
A
THR
24
n
24
THR
24
A
VAL
25
n
25
VAL
25
A
GLU
26
n
26
GLU
26
A
MET
27
n
27
MET
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
ALA
30
n
30
ALA
30
A
GLU
31
n
31
GLU
31
A
GLY
32
n
32
GLY
32
A
ILE
33
n
33
ILE
33
A
ILE
34
n
34
ILE
34
A
ARG
35
n
35
ARG
35
A
SER
36
n
36
SER
36
A
LYS
37
n
37
LYS
37
A
GLU
38
n
38
GLU
38
A
VAL
39
n
39
VAL
39
A
GLU
40
n
40
GLU
40
A
ARG
41
n
41
ARG
41
A
ALA
42
n
42
ALA
42
A
PHE
43
n
43
PHE
43
A
LEU
44
n
44
LEU
44
A
LYS
45
n
45
LYS
45
A
TYR
46
n
46
TYR
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
TYR
49
n
49
TYR
49
A
LEU
50
n
50
LEU
50
A
SER
51
n
51
SER
51
A
VAL
52
n
52
VAL
52
A
GLU
53
n
53
GLU
53
A
ASP
54
n
54
ASP
54
A
LYS
55
n
55
LYS
55
A
TYR
56
n
56
TYR
56
A
LYS
57
n
57
LYS
57
A
LYS
58
n
58
LYS
58
A
TYR
59
n
59
TYR
59
A
ALA
60
n
60
ALA
60
A
HIS
61
n
61
HIS
61
A
ILE
62
n
62
ILE
62
A
ASP
63
n
63
ASP
63
A
GLU
64
n
64
GLU
64
A
PRO
65
n
65
PRO
65
A
LEU
66
n
66
LEU
66
A
PRO
67
n
67
PRO
67
A
ILE
68
n
68
ILE
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
GLY
71
n
71
GLY
71
A
GLN
72
n
72
GLN
72
A
THR
73
n
73
THR
73
A
VAL
74
n
74
VAL
74
A
SER
75
n
75
SER
75
A
ALA
76
n
76
ALA
76
A
PRO
77
n
77
PRO
77
A
HIS
78
n
78
HIS
78
A
MET
79
n
79
MET
79
A
VAL
80
n
80
VAL
80
A
ALA
81
n
81
ALA
81
A
ILE
82
n
82
ILE
82
A
MET
83
n
83
MET
83
A
LEU
84
n
84
LEU
84
A
GLU
85
n
85
GLU
85
A
ILE
86
n
86
ILE
86
A
ALA
87
n
87
ALA
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LYS
90
n
90
LYS
90
A
PRO
91
n
91
PRO
91
A
GLY
92
n
92
GLY
92
A
MET
93
n
93
MET
93
A
ASN
94
n
94
ASN
94
A
ILE
95
n
95
ILE
95
A
LEU
96
n
96
LEU
96
A
GLU
97
n
97
GLU
97
A
VAL
98
n
98
VAL
98
A
GLY
99
n
99
GLY
99
A
THR
100
n
100
THR
100
A
GLY
101
n
101
GLY
101
A
SER
102
n
102
SER
102
A
GLY
103
n
103
GLY
103
A
TRP
104
n
104
TRP
104
A
ASN
105
n
105
ASN
105
A
ALA
106
n
106
ALA
106
A
ALA
107
n
107
ALA
107
A
LEU
108
n
108
LEU
108
A
ILE
109
n
109
ILE
109
A
SER
110
n
110
SER
110
A
GLU
111
n
111
GLU
111
A
ILE
112
n
112
ILE
112
A
VAL
113
n
113
VAL
113
A
LYS
114
n
114
LYS
114
A
THR
115
n
115
THR
115
A
ASP
116
n
116
ASP
116
A
VAL
117
n
117
VAL
117
A
TYR
118
n
118
TYR
118
A
THR
119
n
119
THR
119
A
ILE
120
n
120
ILE
120
A
GLU
121
n
121
GLU
121
A
ARG
122
n
122
ARG
122
A
ILE
123
n
123
ILE
123
A
PRO
124
n
124
PRO
124
A
GLU
125
n
125
GLU
125
A
LEU
126
n
126
LEU
126
A
VAL
127
n
127
VAL
127
A
GLU
128
n
128
GLU
128
A
PHE
129
n
129
PHE
129
A
ALA
130
n
130
ALA
130
A
LYS
131
n
131
LYS
131
A
ARG
132
n
132
ARG
132
A
ASN
133
n
133
ASN
133
A
LEU
134
n
134
LEU
134
A
GLU
135
n
135
GLU
135
A
ARG
136
n
136
ARG
136
A
ALA
137
n
137
ALA
137
A
GLY
138
n
138
GLY
138
A
VAL
139
n
139
VAL
139
A
LYS
140
n
140
LYS
140
A
ASN
141
n
141
ASN
141
A
VAL
142
n
142
VAL
142
A
HIS
143
n
143
HIS
143
A
VAL
144
n
144
VAL
144
A
ILE
145
n
145
ILE
145
A
LEU
146
n
146
LEU
146
A
GLY
147
n
147
GLY
147
A
ASP
148
n
148
ASP
148
A
GLY
149
n
149
GLY
149
A
SER
150
n
150
SER
150
A
LYS
151
n
151
LYS
151
A
GLY
152
n
152
GLY
152
A
PHE
153
n
153
PHE
153
A
PRO
154
n
154
PRO
154
A
PRO
155
n
155
PRO
155
A
LYS
156
n
156
LYS
156
A
ALA
157
n
157
ALA
157
A
PRO
158
n
158
PRO
158
A
TYR
159
n
159
TYR
159
A
ASP
160
n
160
ASP
160
A
VAL
161
n
161
VAL
161
A
ILE
162
n
162
ILE
162
A
ILE
163
n
163
ILE
163
A
VAL
164
n
164
VAL
164
A
THR
165
n
165
THR
165
A
ALA
166
n
166
ALA
166
A
GLY
167
n
167
GLY
167
A
ALA
168
n
168
ALA
168
A
PRO
169
n
169
PRO
169
A
LYS
170
n
170
LYS
170
A
ILE
171
n
171
ILE
171
A
PRO
172
n
172
PRO
172
A
GLU
173
n
173
GLU
173
A
PRO
174
n
174
PRO
174
A
LEU
175
n
175
LEU
175
A
ILE
176
n
176
ILE
176
A
GLU
177
n
177
GLU
177
A
GLN
178
n
178
GLN
178
A
LEU
179
n
179
LEU
179
A
LYS
180
n
180
LYS
180
A
ILE
181
n
181
ILE
181
A
GLY
182
n
182
GLY
182
A
GLY
183
n
183
GLY
183
A
LYS
184
n
184
LYS
184
A
LEU
185
n
185
LEU
185
A
ILE
186
n
186
ILE
186
A
ILE
187
n
187
ILE
187
A
PRO
188
n
188
PRO
188
A
VAL
189
n
189
VAL
189
A
GLY
190
n
190
GLY
190
A
SER
191
n
191
SER
191
A
TYR
192
n
192
TYR
192
A
HIS
193
n
193
HIS
193
A
LEU
194
n
194
LEU
194
A
TRP
195
n
195
TRP
195
A
GLN
196
n
196
GLN
196
A
GLU
197
n
197
GLU
197
A
LEU
198
n
198
LEU
198
A
LEU
199
n
199
LEU
199
A
GLU
200
n
200
GLU
200
A
VAL
201
n
201
VAL
201
A
ARG
202
n
202
ARG
202
A
LYS
203
n
203
LYS
203
A
THR
204
n
204
THR
204
A
LYS
205
n
205
LYS
205
A
ASP
206
n
206
ASP
206
A
GLY
207
n
207
GLY
207
A
ILE
208
n
208
ILE
208
A
LYS
209
n
209
LYS
209
A
ILE
210
n
210
ILE
210
A
LYS
211
n
211
LYS
211
A
ASN
212
n
212
ASN
212
A
HIS
213
n
213
HIS
213
A
GLY
214
n
214
GLY
214
A
GLY
215
n
215
GLY
215
A
VAL
216
n
216
VAL
216
A
ALA
217
n
217
ALA
217
A
PHE
218
n
218
PHE
218
A
VAL
219
n
219
VAL
219
A
PRO
220
n
220
PRO
220
A
LEU
221
n
221
LEU
221
A
ILE
222
n
222
ILE
222
A
GLY
223
n
223
GLY
223
A
GLU
224
n
224
GLU
224
A
TYR
225
n
225
TYR
225
A
GLY
226
n
226
GLY
226
A
TRP
227
n
227
TRP
227
A
LYS
228
n
228
LYS
228
A
n
229
229
A
n
230
230
A
n
231
231
A
n
232
232
A
n
233
233
A
n
234
234
A
n
235
235
A
author_defined_assembly
1
monomeric
A
HOH
1124
D
O
HOH
1_555
A
NA
236
B
NA
NA
1_555
A
HOH
1126
D
O
HOH
1_555
96.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
66
A
N
LEU
66
A
O
VAL
74
A
O
VAL
74
A
O
ILE
145
A
O
ILE
145
A
N
THR
119
A
N
THR
119
A
O
TYR
118
A
O
TYR
118
A
N
GLU
97
A
N
GLU
97
A
N
VAL
98
A
N
VAL
98
A
O
ILE
163
A
O
ILE
163
A
N
ILE
162
A
N
ILE
162
A
O
ILE
186
A
O
ILE
186
A
N
LEU
185
A
N
LEU
185
A
O
VAL
201
A
O
VAL
201
A
N
ARG
202
A
N
ARG
202
A
O
LYS
209
A
O
LYS
209
1
A
CG
GLU
19
A
CG
GLU
19
0
Y
1
A
CD
GLU
19
A
CD
GLU
19
0
Y
1
A
OE1
GLU
19
A
OE1
GLU
19
0
Y
1
A
OE2
GLU
19
A
OE2
GLU
19
0
Y
1
A
NE
ARG
23
A
NE
ARG
23
0
Y
1
A
CZ
ARG
23
A
CZ
ARG
23
0
Y
1
A
NH1
ARG
23
A
NH1
ARG
23
0
Y
1
A
NH2
ARG
23
A
NH2
ARG
23
0
Y
1
A
CD
ARG
41
A
CD
ARG
41
0
Y
1
A
NE
ARG
41
A
NE
ARG
41
0
Y
1
A
CZ
ARG
41
A
CZ
ARG
41
0
Y
1
A
NH1
ARG
41
A
NH1
ARG
41
0
Y
1
A
NH2
ARG
41
A
NH2
ARG
41
0
Y
1
A
CG
ARG
132
A
CG
ARG
132
0
Y
1
A
CD
ARG
132
A
CD
ARG
132
0
Y
1
A
NE
ARG
132
A
NE
ARG
132
0
Y
1
A
CZ
ARG
132
A
CZ
ARG
132
0
Y
1
A
NH1
ARG
132
A
NH1
ARG
132
0
Y
1
A
NH2
ARG
132
A
NH2
ARG
132
0
Y
1
A
OE1
GLU
135
A
OE1
GLU
135
0
Y
1
A
OE2
GLU
135
A
OE2
GLU
135
0
Y
1
A
CD
LYS
205
A
CD
LYS
205
0
Y
1
A
CE
LYS
205
A
CE
LYS
205
0
Y
1
A
NZ
LYS
205
A
NZ
LYS
205
0
Y
1
A
CD
LYS
211
A
CD
LYS
211
0
Y
1
A
CE
LYS
211
A
CE
LYS
211
0
Y
1
A
NZ
LYS
211
A
NZ
LYS
211
0
Y
1
A
CG
ASN
212
A
CG
ASN
212
0
Y
1
A
OD1
ASN
212
A
OD1
ASN
212
0
Y
1
A
ND2
ASN
212
A
ND2
ASN
212
0
Y
1
A
MET
1
A
MET
1
1
Y
1
A
HIS
2
A
HIS
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
TYR
4
A
TYR
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
SER
6
A
SER
6
1
Y
1
A
ASP
7
A
ASP
7
1
Y
1
A
PHE
8
A
PHE
8
1
Y
1
A
PRO
9
A
PRO
9
1
Y
1
A
LEU
10
A
LEU
10
1
Y
1
A
MET
11
A
MET
11
1
Y
1
A
MET
12
A
MET
12
1
Y
1
A
ASP
13
A
ASP
13
1
Y
1
A
GLU
229
A
GLU
229
1
Y
1
A
HIS
230
A
HIS
230
1
Y
1
A
HIS
231
A
HIS
231
1
Y
1
A
HIS
232
A
HIS
232
1
Y
1
A
HIS
233
A
HIS
233
1
Y
1
A
HIS
234
A
HIS
234
1
Y
1
A
HIS
235
A
HIS
235
1
Y
1
A
PHE
153
-153.72
82.08
-8.411
0.000
0.000
3.067
0.000
5.344
0.2360000
0.2210000
0.2290000
0.2290000
1.50
500
1517
30345
30345
5.0
random
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
Engh & Huber
1.50
500
130
1848
20
0
1698
0.005
1.4
1.013
1.5
1.821
2.0
1.458
2.0
2.605
2.5
1.5
500
1JG2
30345
30345
0.0
0.0
0.0730000
1
95.3
0.4580000
1.50
1.55
95.3
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Crystal Structure of L-isoaspartyl (D-aspartyl) O-methyltransferase with adenosine
1
N
N
2
N
N
3
N
N
4
N
N
A
GLU
14
A
GLU
14
HELX_P
A
GLU
31
A
GLU
31
1
1
18
A
SER
36
A
SER
36
HELX_P
A
TYR
46
A
TYR
46
1
2
11
A
PRO
47
A
PRO
47
HELX_P
A
VAL
52
A
VAL
52
5
3
6
A
GLU
53
A
GLU
53
HELX_P
A
ALA
60
A
ALA
60
5
4
8
A
ALA
76
A
ALA
76
HELX_P
A
ASN
88
A
ASN
88
1
5
13
A
GLY
103
A
GLY
103
HELX_P
A
LYS
114
A
LYS
114
1
6
12
A
ILE
123
A
ILE
123
HELX_P
A
ALA
137
A
ALA
137
1
7
15
A
ASP
148
A
ASP
148
HELX_P
A
GLY
152
A
GLY
152
5
8
5
A
PHE
153
A
PHE
153
HELX_P
A
ALA
157
A
ALA
157
5
9
5
A
PRO
172
A
PRO
172
HELX_P
A
GLN
178
A
GLN
178
1
10
7
metalc
2.804
A
NA
236
B
NA
NA
1_555
A
HOH
1124
D
O
HOH
1_555
metalc
2.776
A
NA
236
B
NA
NA
1_555
A
HOH
1126
D
O
HOH
1_555
TRANSFERASE
Rossman methyltransferase, PROTEIN REPAIR ISOMERIZATION, TRANSFERASE
A
ALA
157
A
ALA
157
1
A
PRO
158
A
PRO
158
-0.03
PIMT_PYRFU
UNP
1
1
Q8TZR3
1
219
1JG2
11
229
Q8TZR3
A
1
11
229
2
7
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
LEU
66
A
LEU
66
A
PRO
67
A
PRO
67
A
THR
73
A
THR
73
A
VAL
74
A
VAL
74
A
VAL
142
A
VAL
142
A
LEU
146
A
LEU
146
A
VAL
117
A
VAL
117
A
GLU
121
A
GLU
121
A
ILE
95
A
ILE
95
A
VAL
98
A
VAL
98
A
TYR
159
A
TYR
159
A
VAL
164
A
VAL
164
A
LEU
179
A
LEU
179
A
VAL
189
A
VAL
189
A
GLN
196
A
GLN
196
A
THR
204
A
THR
204
A
GLY
207
A
GLY
207
A
VAL
216
A
VAL
216
BINDING SITE FOR RESIDUE NA A 236
A
NA
236
Software
5
BINDING SITE FOR RESIDUE ADN A 500
A
ADN
500
Software
17
A
SER
102
A
SER
102
5
1_555
A
TRP
104
A
TRP
104
5
1_555
A
ASN
105
A
ASN
105
5
1_555
A
HOH
1124
D
HOH
5
1_555
A
HOH
1126
D
HOH
5
1_555
A
GLN
72
A
GLN
72
17
1_555
A
GLY
99
A
GLY
99
17
1_555
A
GLY
101
A
GLY
101
17
1_555
A
ILE
120
A
ILE
120
17
1_555
A
GLU
121
A
GLU
121
17
1_555
A
ARG
122
A
ARG
122
17
1_555
A
ILE
123
A
ILE
123
17
1_555
A
LEU
126
A
LEU
126
17
1_555
A
GLY
147
A
GLY
147
17
1_555
A
ASP
148
A
ASP
148
17
1_555
A
GLY
149
A
GLY
149
17
1_555
A
THR
165
A
THR
165
17
1_555
A
PRO
220
A
PRO
220
17
1_555
A
LEU
221
A
LEU
221
17
1_555
A
ILE
222
A
ILE
222
17
1_555
A
HOH
1096
D
HOH
17
1_555
A
HOH
1128
D
HOH
17
1_555
19
orthorhombic
P 21 21 21