0.029360
0.000000
0.000000
0.000000
0.016231
0.000000
0.000000
0.000000
0.025006
0.00000
0.00000
0.00000
Hirsch, J.A.
Aggarwal, A.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
34.060
61.610
39.990
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
S
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
N
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
S
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
R
C
N
431
N
O
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
N
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
N
481
N
O
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
N
N
495
S
C
N
496
N
C
N
497
N
O
N
498
N
C
N
499
N
C
N
500
N
C
N
501
N
O
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
Y
445
N
doub
Y
446
N
sing
Y
447
N
sing
N
448
N
sing
Y
449
N
doub
Y
450
N
sing
Y
451
N
sing
N
452
N
sing
Y
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
doub
N
457
N
sing
Y
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
Y
473
N
doub
Y
474
N
sing
Y
475
N
sing
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
doub
N
480
N
sing
Y
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
14
6280
6291
8557047
Structure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity.
1995
10.2210/pdb1jgg/pdb
pdb_00001jgg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
283
1
277
1
IMAGE PLATE
FUJI
IMAGE PLATE
FUJI
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL-6A
Photon Factory
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
X4A
NSLS
SYNCHROTRON
NSLS BEAMLINE X4A
3058.040
5'-D(P*TP*AP*AP*TP*TP*GP*AP*AP*TP*T)-3'
1
syn
polymer
3027.030
5'-D(P*AP*AP*TP*TP*CP*AP*AP*TP*TP*A)-3'
1
syn
polymer
7550.718
Segmentation Protein Even-Skipped
Homeodomain
2
man
polymer
18.015
water
68
nat
water
no
no
(DT)(DA)(DA)(DT)(DT)(DG)(DA)(DA)(DT)(DT)
TAATTGAATT
C
polydeoxyribonucleotide
no
no
(DA)(DA)(DT)(DT)(DC)(DA)(DA)(DT)(DT)(DA)
AATTCAATTA
D
polydeoxyribonucleotide
no
no
VRRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR
VRRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
fruit fly
Drosophila
Escherichia
sample
7227
Drosophila melanogaster
562
Escherichia coli
plasmid
pET-3a
3
1.96
37.36
VAPOR DIFFUSION, HANGING DROP
6.4
sodium acetate, potassium chloride, DTT, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
sodium acetate
1
potassium chloride
1
DTT
1
5.892
1
20
C
201
D
220
11.362
C_DT201:DA220_D
1
-10.523
-0.401
-0.966
-0.134
-9.293
1
20
C
202
D
219
0.685
C_DA202:DT219_D
2
-20.041
0.146
-0.385
-0.264
1.135
1
20
C
203
D
218
4.944
C_DA203:DT218_D
3
-7.240
-0.492
0.574
-0.239
1.841
1
20
C
204
D
217
1.172
C_DT204:DA217_D
4
-7.656
0.293
-0.074
-0.293
-1.372
1
20
C
205
D
216
1.599
C_DT205:DA216_D
5
-20.888
0.033
-0.224
-0.165
8.063
1
19
C
206
D
215
10.122
C_DG206:DC215_D
6
-6.345
0.146
0.452
0.027
3.675
1
20
C
207
D
214
7.060
C_DA207:DT214_D
7
-12.029
0.439
0.471
-0.228
-0.763
1
20
C
208
D
213
5.863
C_DA208:DT213_D
8
-12.905
-0.251
0.050
0.154
-1.272
1
20
C
209
D
212
0.575
C_DT209:DA212_D
9
-13.276
0.367
0.290
-0.307
-0.219
1
20
C
210
D
211
-7.933
C_DT210:DA211_D
10
-14.105
-0.034
-0.356
-0.424
4.280
43.595
C
C
201
202
8.125
D
D
220
219
3.857
5.965
-1.349
1.932
CC_DT201DA202:DT219DA220_DD
1
-10.256
13.970
42.025
1.873
0.565
2.571
33.545
C
C
202
203
2.107
D
D
219
218
2.852
1.198
0.539
-0.171
CC_DA202DA203:DT218DT219_DD
2
-9.876
17.358
32.076
-0.464
-2.310
3.519
37.116
C
C
203
204
-3.558
D
D
218
217
3.523
-2.263
-0.591
-0.437
CC_DA203DT204:DA217DT218_DD
3
1.410
-2.217
37.023
-0.361
1.131
3.309
32.251
C
C
204
205
2.655
D
D
217
216
3.382
1.473
-0.537
-0.437
CC_DT204DT205:DA216DA217_DD
4
2.499
-4.504
32.124
-1.055
1.423
3.139
38.861
C
C
205
206
2.022
D
D
216
215
3.170
1.345
1.330
1.245
CC_DT205DG206:DC215DA216_DD
5
-2.006
3.017
38.788
1.714
-2.235
3.519
41.278
C
C
206
207
-6.662
D
D
215
214
3.653
-4.686
-1.010
1.377
CC_DG206DA207:DT214DC215_DD
6
-1.703
2.421
40.989
2.507
1.231
3.229
31.643
C
C
207
208
12.224
D
D
214
213
3.375
6.619
0.031
-0.366
CC_DA207DA208:DT213DT214_DD
7
-0.141
0.261
30.960
-1.919
-0.084
3.389
38.192
C
C
208
209
-4.005
D
D
213
212
3.299
-2.610
-0.727
-0.438
CC_DA208DT209:DA212DT213_DD
8
-5.446
8.356
37.729
-0.331
0.405
3.119
30.158
C
C
209
210
3.946
D
D
212
211
3.299
2.036
-0.370
-0.242
CC_DT209DT210:DA211DA212_DD
9
6.632
-12.856
29.367
-0.877
2.055
software
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2001-07-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2001-06-25
REL
HOH
water
WAT
7
4
HOH
HOH
7
C
WAT
8
4
HOH
HOH
8
C
WAT
9
4
HOH
HOH
9
C
WAT
13
4
HOH
HOH
13
C
WAT
14
4
HOH
HOH
14
C
WAT
15
4
HOH
HOH
15
C
WAT
16
4
HOH
HOH
16
C
WAT
18
4
HOH
HOH
18
C
WAT
25
4
HOH
HOH
25
C
WAT
27
4
HOH
HOH
27
C
WAT
34
4
HOH
HOH
34
C
WAT
35
4
HOH
HOH
35
C
WAT
36
4
HOH
HOH
36
C
WAT
37
4
HOH
HOH
37
C
WAT
44
4
HOH
HOH
44
C
WAT
46
4
HOH
HOH
46
C
WAT
47
4
HOH
HOH
47
C
WAT
52
4
HOH
HOH
52
C
WAT
58
4
HOH
HOH
58
C
WAT
61
4
HOH
HOH
61
C
WAT
66
4
HOH
HOH
66
C
WAT
4
4
HOH
HOH
4
D
WAT
5
4
HOH
HOH
5
D
WAT
6
4
HOH
HOH
6
D
WAT
10
4
HOH
HOH
10
D
WAT
28
4
HOH
HOH
28
D
WAT
29
4
HOH
HOH
29
D
WAT
41
4
HOH
HOH
41
D
WAT
48
4
HOH
HOH
48
D
WAT
49
4
HOH
HOH
49
D
WAT
51
4
HOH
HOH
51
D
WAT
65
4
HOH
HOH
65
D
WAT
67
4
HOH
HOH
67
D
WAT
1
4
HOH
HOH
1
A
WAT
2
4
HOH
HOH
2
A
WAT
17
4
HOH
HOH
17
A
WAT
19
4
HOH
HOH
19
A
WAT
20
4
HOH
HOH
20
A
WAT
21
4
HOH
HOH
21
A
WAT
22
4
HOH
HOH
22
A
WAT
23
4
HOH
HOH
23
A
WAT
24
4
HOH
HOH
24
A
WAT
26
4
HOH
HOH
26
A
WAT
38
4
HOH
HOH
38
A
WAT
40
4
HOH
HOH
40
A
WAT
42
4
HOH
HOH
42
A
WAT
43
4
HOH
HOH
43
A
WAT
50
4
HOH
HOH
50
A
WAT
53
4
HOH
HOH
53
A
WAT
54
4
HOH
HOH
54
A
WAT
55
4
HOH
HOH
55
A
WAT
56
4
HOH
HOH
56
A
WAT
57
4
HOH
HOH
57
A
WAT
59
4
HOH
HOH
59
A
WAT
64
4
HOH
HOH
64
A
WAT
70
4
HOH
HOH
70
A
WAT
11
4
HOH
HOH
11
B
WAT
12
4
HOH
HOH
12
B
WAT
30
4
HOH
HOH
30
B
WAT
31
4
HOH
HOH
31
B
WAT
32
4
HOH
HOH
32
B
WAT
39
4
HOH
HOH
39
B
WAT
45
4
HOH
HOH
45
B
WAT
60
4
HOH
HOH
60
B
WAT
62
4
HOH
HOH
62
B
WAT
63
4
HOH
HOH
63
B
WAT
68
4
HOH
HOH
68
B
WAT
69
4
HOH
HOH
69
B
THY
201
n
1
DT
201
C
ADE
202
n
2
DA
202
C
ADE
203
n
3
DA
203
C
THY
204
n
4
DT
204
C
THY
205
n
5
DT
205
C
GUA
206
n
6
DG
206
C
ADE
207
n
7
DA
207
C
ADE
208
n
8
DA
208
C
THY
209
n
9
DT
209
C
THY
210
n
10
DT
210
C
ADE
211
n
1
DA
211
D
ADE
212
n
2
DA
212
D
THY
213
n
3
DT
213
D
THY
214
n
4
DT
214
D
CYT
215
n
5
DC
215
D
ADE
216
n
6
DA
216
D
ADE
217
n
7
DA
217
D
THY
218
n
8
DT
218
D
THY
219
n
9
DT
219
D
ADE
220
n
10
DA
220
D
n
1
101
A
n
2
102
A
ARG
103
n
3
ARG
103
A
TYR
104
n
4
TYR
104
A
ARG
105
n
5
ARG
105
A
THR
106
n
6
THR
106
A
ALA
107
n
7
ALA
107
A
PHE
108
n
8
PHE
108
A
THR
109
n
9
THR
109
A
ARG
110
n
10
ARG
110
A
ASP
111
n
11
ASP
111
A
GLN
112
n
12
GLN
112
A
LEU
113
n
13
LEU
113
A
GLY
114
n
14
GLY
114
A
ARG
115
n
15
ARG
115
A
LEU
116
n
16
LEU
116
A
GLU
117
n
17
GLU
117
A
LYS
118
n
18
LYS
118
A
GLU
119
n
19
GLU
119
A
PHE
120
n
20
PHE
120
A
TYR
121
n
21
TYR
121
A
LYS
122
n
22
LYS
122
A
GLU
123
n
23
GLU
123
A
ASN
124
n
24
ASN
124
A
TYR
125
n
25
TYR
125
A
VAL
126
n
26
VAL
126
A
SER
127
n
27
SER
127
A
ARG
128
n
28
ARG
128
A
PRO
129
n
29
PRO
129
A
ARG
130
n
30
ARG
130
A
ARG
131
n
31
ARG
131
A
CYS
132
n
32
CYS
132
A
GLU
133
n
33
GLU
133
A
LEU
134
n
34
LEU
134
A
ALA
135
n
35
ALA
135
A
ALA
136
n
36
ALA
136
A
GLN
137
n
37
GLN
137
A
LEU
138
n
38
LEU
138
A
ASN
139
n
39
ASN
139
A
LEU
140
n
40
LEU
140
A
PRO
141
n
41
PRO
141
A
GLU
142
n
42
GLU
142
A
SER
143
n
43
SER
143
A
THR
144
n
44
THR
144
A
ILE
145
n
45
ILE
145
A
LYS
146
n
46
LYS
146
A
VAL
147
n
47
VAL
147
A
TRP
148
n
48
TRP
148
A
PHE
149
n
49
PHE
149
A
GLN
150
n
50
GLN
150
A
ASN
151
n
51
ASN
151
A
ARG
152
n
52
ARG
152
A
ARG
153
n
53
ARG
153
A
MET
154
n
54
MET
154
A
LYS
155
n
55
LYS
155
A
ASP
156
n
56
ASP
156
A
LYS
157
n
57
LYS
157
A
ARG
158
n
58
ARG
158
A
GLN
159
n
59
GLN
159
A
n
60
160
A
n
1
301
B
n
2
302
B
ARG
303
n
3
ARG
303
B
TYR
304
n
4
TYR
304
B
ARG
305
n
5
ARG
305
B
THR
306
n
6
THR
306
B
ALA
307
n
7
ALA
307
B
PHE
308
n
8
PHE
308
B
THR
309
n
9
THR
309
B
ARG
310
n
10
ARG
310
B
ASP
311
n
11
ASP
311
B
GLN
312
n
12
GLN
312
B
LEU
313
n
13
LEU
313
B
GLY
314
n
14
GLY
314
B
ARG
315
n
15
ARG
315
B
LEU
316
n
16
LEU
316
B
GLU
317
n
17
GLU
317
B
LYS
318
n
18
LYS
318
B
GLU
319
n
19
GLU
319
B
PHE
320
n
20
PHE
320
B
TYR
321
n
21
TYR
321
B
LYS
322
n
22
LYS
322
B
GLU
323
n
23
GLU
323
B
ASN
324
n
24
ASN
324
B
TYR
325
n
25
TYR
325
B
VAL
326
n
26
VAL
326
B
SER
327
n
27
SER
327
B
ARG
328
n
28
ARG
328
B
PRO
329
n
29
PRO
329
B
ARG
330
n
30
ARG
330
B
ARG
331
n
31
ARG
331
B
CYS
332
n
32
CYS
332
B
GLU
333
n
33
GLU
333
B
LEU
334
n
34
LEU
334
B
ALA
335
n
35
ALA
335
B
ALA
336
n
36
ALA
336
B
GLN
337
n
37
GLN
337
B
LEU
338
n
38
LEU
338
B
ASN
339
n
39
ASN
339
B
LEU
340
n
40
LEU
340
B
PRO
341
n
41
PRO
341
B
GLU
342
n
42
GLU
342
B
SER
343
n
43
SER
343
B
THR
344
n
44
THR
344
B
ILE
345
n
45
ILE
345
B
LYS
346
n
46
LYS
346
B
VAL
347
n
47
VAL
347
B
TRP
348
n
48
TRP
348
B
PHE
349
n
49
PHE
349
B
GLN
350
n
50
GLN
350
B
ASN
351
n
51
ASN
351
B
ARG
352
n
52
ARG
352
B
ARG
353
n
53
ARG
353
B
MET
354
n
54
MET
354
B
LYS
355
n
55
LYS
355
B
ASP
356
n
56
ASP
356
B
LYS
357
n
57
LYS
357
B
ARG
358
n
58
ARG
358
B
GLN
359
n
59
GLN
359
B
n
60
360
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
VAL
101
C
VAL
1
1
Y
1
A
ARG
102
C
ARG
2
1
Y
1
A
ARG
160
C
ARG
60
1
Y
1
B
VAL
301
D
VAL
1
1
Y
1
B
ARG
302
D
ARG
2
1
Y
1
B
ARG
360
D
ARG
60
1
Y
1
C
DT
210
0.091
SIDE CHAIN
1
D
DT
214
0.091
SIDE CHAIN
1
D
DA
217
0.054
SIDE CHAIN
1
2.02
0.30
108.30
110.32
C
C
C
O4'
C1'
N1
DT
DT
DT
210
210
210
N
1
2.26
0.30
108.30
110.56
D
D
D
O4'
C1'
N9
DA
DA
DA
217
217
217
N
1
1.88
0.30
108.30
110.18
D
D
D
O4'
C1'
N1
DT
DT
DT
219
219
219
N
1
16.51
2.70
111.00
127.51
B
B
B
N
CA
C
TYR
TYR
TYR
304
304
304
N
1
19.72
2.70
111.00
130.72
B
B
B
N
CA
C
ARG
ARG
ARG
305
305
305
N
1
A
TYR
104
177.10
-152.77
1
A
ARG
105
147.12
81.94
1
B
TYR
304
-170.05
-161.74
1
B
ARG
305
138.42
103.97
0.3160000
0.2290000
2
8
RANDOM
1
2.0
Engh & Huber
2
8
68
1541
0
410
1063
.016
2.56
2.0
15
1JGG
8613
8613
0.0760000
1
2.4
77.1
0.1860000
2.0
2.11
837
1.3
52.4
model building
X-PLOR
refinement
X-PLOR
data reduction
DENZO
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
phasing
X-PLOR
Even-skipped Homeodomain Complexed to AT-rich DNA
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
THR
109
C
THR
9
HELX_P
A
GLU
123
C
GLU
23
1
1
15
A
SER
127
C
SER
27
HELX_P
A
ASN
139
C
ASN
39
1
2
13
A
PRO
141
C
PRO
41
HELX_P
A
GLN
159
C
GLN
59
1
3
19
B
THR
309
D
THR
9
HELX_P
B
GLU
323
D
GLU
23
1
4
15
B
SER
327
D
SER
27
HELX_P
B
ASN
339
D
ASN
39
1
5
13
B
PRO
341
D
PRO
41
HELX_P
B
GLN
359
D
GLN
59
1
6
19
hydrog
WATSON-CRICK
C
DT
201
A
N3
DT
1
1_555
D
DA
220
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
C
DT
201
A
O4
DT
1
1_555
D
DA
220
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
C
DA
202
A
N1
DA
2
1_555
D
DT
219
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
202
A
N6
DA
2
1_555
D
DT
219
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
203
A
N1
DA
3
1_555
D
DT
218
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
203
A
N6
DA
3
1_555
D
DT
218
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
C
DT
204
A
N3
DT
4
1_555
D
DA
217
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
C
DT
204
A
O4
DT
4
1_555
D
DA
217
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
C
DT
205
A
N3
DT
5
1_555
D
DA
216
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
205
A
O4
DT
5
1_555
D
DA
216
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
C
DG
206
A
N1
DG
6
1_555
D
DC
215
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
206
A
N2
DG
6
1_555
D
DC
215
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
206
A
O6
DG
6
1_555
D
DC
215
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DA
207
A
N1
DA
7
1_555
D
DT
214
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
207
A
N6
DA
7
1_555
D
DT
214
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
208
A
N1
DA
8
1_555
D
DT
213
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
C
DA
208
A
N6
DA
8
1_555
D
DT
213
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
C
DT
209
A
N3
DT
9
1_555
D
DA
212
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
209
A
O4
DT
9
1_555
D
DA
212
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
210
A
N3
DT
10
1_555
D
DA
211
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
C
DT
210
A
O4
DT
10
1_555
D
DA
211
B
N6
DA
1
1_555
TRANSCRIPTION/DNA
EVEN-SKIPPED, HOMEODOMAIN, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX
EVE_DROME
UNP
3
70
P06602
1JGG
PDB
1
1JGG
1JGG
PDB
2
1JGG
70
129
1JGG
101
160
P06602
A
1
1
60
70
129
1JGG
301
360
P06602
B
1
1
60
201
210
1JGG
201
210
1JGG
C
2
1
10
211
220
1JGG
211
220
1JGG
D
3
1
10
4
P 1 21 1