0.014782 0.000000 0.004295 0.000000 0.020760 0.000000 0.000000 0.000000 0.015031 0.00000 0.00000 0.00000 Larsen, N.A. Heine, A. Crane, L. Cravatt, B.F. Lerner, R.A. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90 106.20 90 67.65 48.17 69.28 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 314 93 102 10.1006/jmbi.2001.5112 11724535 Structural basis for a disfavored elimination reaction in catalytic antibody 1D4. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 120 1 CCD 2000-02-13 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.033 1.0 BL9-2 SSRL 1.033 SYNCHROTRON SSRL BEAMLINE BL9-2 24206.891 Antibody Light Chain 1 nat polymer 23650.656 Antibody Heavy Chain 1 nat polymer 18.015 water 246 nat water no no EVVMTQSPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQSTHVPPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC EVVMTQSPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCSQSTHVPPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no EVKLVESRGGLVKPGGSLQLSCAASGFTFSGYAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVKGRFTISSDYARNILYL QMSTLRSEDTAMYYCSRGDAYSRYFDVWGAGTTVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR EVKLVESRGGLVKPGGSLQLSCAASGFTFSGYAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVKGRFTISSDYARNILYL QMSTLRSEDTAMYYCSRGDAYSRYFDVWGAGTTVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse purified from IgG derived from ascites fluid Mus sample 10090 Mus musculus Balbc house mouse purified from IgG derived from ascites fluid Mus sample 10090 Mus musculus Balbc 1 2.26 45.67 VAPOR DIFFUSION, SITTING DROP 7.5 PEG 4K, 10% isopropanol, 10% HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 23K 296.0 exptl_crystal_grow repository Initial release Version format compliance Version format compliance Experimental preparation 1 0 2001-12-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-31 _exptl_crystal_grow.temp STRUCTURAL BASIS FOR DISFAVORED ELIMINATION REACTION IN CATALYTIC ANTIBODY 1D4 RCSB Y RCSB 2001-06-26 REL REL HOH water HOH 1 3 HOH HOH 215 L HOH 2 3 HOH HOH 216 L HOH 3 3 HOH HOH 217 L HOH 4 3 HOH HOH 218 L HOH 5 3 HOH HOH 219 L HOH 6 3 HOH HOH 220 L HOH 7 3 HOH HOH 221 L HOH 8 3 HOH HOH 222 L HOH 13 3 HOH HOH 223 L HOH 14 3 HOH HOH 224 L HOH 15 3 HOH HOH 225 L HOH 16 3 HOH HOH 226 L HOH 17 3 HOH HOH 227 L HOH 18 3 HOH HOH 228 L HOH 19 3 HOH HOH 229 L HOH 21 3 HOH HOH 230 L HOH 26 3 HOH HOH 231 L HOH 27 3 HOH HOH 232 L HOH 28 3 HOH HOH 233 L HOH 29 3 HOH HOH 234 L HOH 30 3 HOH HOH 235 L HOH 31 3 HOH HOH 236 L HOH 32 3 HOH HOH 237 L HOH 33 3 HOH HOH 238 L HOH 34 3 HOH HOH 239 L HOH 35 3 HOH HOH 240 L HOH 36 3 HOH HOH 241 L HOH 37 3 HOH HOH 242 L HOH 38 3 HOH HOH 243 L HOH 39 3 HOH HOH 244 L HOH 41 3 HOH HOH 245 L HOH 45 3 HOH HOH 246 L HOH 46 3 HOH HOH 247 L HOH 48 3 HOH HOH 248 L HOH 50 3 HOH HOH 249 L HOH 51 3 HOH HOH 250 L HOH 52 3 HOH HOH 251 L HOH 54 3 HOH HOH 252 L HOH 58 3 HOH HOH 253 L HOH 61 3 HOH HOH 254 L HOH 63 3 HOH HOH 255 L HOH 64 3 HOH HOH 256 L HOH 65 3 HOH HOH 257 L HOH 66 3 HOH HOH 258 L HOH 69 3 HOH HOH 259 L HOH 71 3 HOH HOH 260 L HOH 72 3 HOH HOH 261 L HOH 75 3 HOH HOH 262 L HOH 78 3 HOH HOH 263 L HOH 79 3 HOH HOH 264 L HOH 80 3 HOH HOH 265 L HOH 82 3 HOH HOH 266 L HOH 83 3 HOH HOH 267 L HOH 86 3 HOH HOH 268 L HOH 88 3 HOH HOH 269 L HOH 89 3 HOH HOH 270 L HOH 91 3 HOH HOH 271 L HOH 93 3 HOH HOH 272 L HOH 98 3 HOH HOH 273 L HOH 99 3 HOH HOH 274 L HOH 101 3 HOH HOH 275 L HOH 102 3 HOH HOH 276 L HOH 111 3 HOH HOH 277 L HOH 112 3 HOH HOH 278 L HOH 113 3 HOH HOH 279 L HOH 114 3 HOH HOH 280 L HOH 115 3 HOH HOH 281 L HOH 116 3 HOH HOH 282 L HOH 119 3 HOH HOH 283 L HOH 120 3 HOH HOH 284 L HOH 122 3 HOH HOH 285 L HOH 126 3 HOH HOH 286 L HOH 132 3 HOH HOH 287 L HOH 133 3 HOH HOH 288 L HOH 134 3 HOH HOH 289 L HOH 135 3 HOH HOH 290 L HOH 136 3 HOH HOH 291 L HOH 138 3 HOH HOH 292 L HOH 140 3 HOH HOH 293 L HOH 142 3 HOH HOH 294 L HOH 143 3 HOH HOH 295 L HOH 146 3 HOH HOH 296 L HOH 147 3 HOH HOH 297 L HOH 148 3 HOH HOH 298 L HOH 149 3 HOH HOH 299 L HOH 151 3 HOH HOH 300 L HOH 152 3 HOH HOH 301 L HOH 154 3 HOH HOH 302 L HOH 155 3 HOH HOH 303 L HOH 157 3 HOH HOH 304 L HOH 158 3 HOH HOH 305 L HOH 159 3 HOH HOH 306 L HOH 165 3 HOH HOH 307 L HOH 166 3 HOH HOH 308 L HOH 167 3 HOH HOH 309 L HOH 169 3 HOH HOH 310 L HOH 170 3 HOH HOH 311 L HOH 173 3 HOH HOH 312 L HOH 174 3 HOH HOH 313 L HOH 175 3 HOH HOH 314 L HOH 178 3 HOH HOH 315 L HOH 179 3 HOH HOH 316 L HOH 181 3 HOH HOH 317 L HOH 183 3 HOH HOH 318 L HOH 184 3 HOH HOH 319 L HOH 185 3 HOH HOH 320 L HOH 186 3 HOH HOH 321 L HOH 189 3 HOH HOH 322 L HOH 190 3 HOH HOH 323 L HOH 195 3 HOH HOH 324 L HOH 196 3 HOH HOH 325 L HOH 197 3 HOH HOH 326 L HOH 198 3 HOH HOH 327 L HOH 203 3 HOH HOH 328 L HOH 204 3 HOH HOH 329 L HOH 205 3 HOH HOH 330 L HOH 206 3 HOH HOH 331 L HOH 208 3 HOH HOH 332 L HOH 212 3 HOH HOH 333 L HOH 213 3 HOH HOH 334 L HOH 214 3 HOH HOH 335 L HOH 215 3 HOH HOH 336 L HOH 217 3 HOH HOH 337 L HOH 220 3 HOH HOH 338 L HOH 221 3 HOH HOH 339 L HOH 222 3 HOH HOH 340 L HOH 223 3 HOH HOH 341 L HOH 226 3 HOH HOH 342 L HOH 227 3 HOH HOH 343 L HOH 230 3 HOH HOH 344 L HOH 231 3 HOH HOH 345 L HOH 232 3 HOH HOH 346 L HOH 234 3 HOH HOH 347 L HOH 237 3 HOH HOH 348 L HOH 238 3 HOH HOH 349 L HOH 241 3 HOH HOH 350 L HOH 243 3 HOH HOH 351 L HOH 245 3 HOH HOH 352 L HOH 246 3 HOH HOH 353 L HOH 9 3 HOH HOH 214 H HOH 10 3 HOH HOH 215 H HOH 11 3 HOH HOH 216 H HOH 12 3 HOH HOH 217 H HOH 20 3 HOH HOH 218 H HOH 22 3 HOH HOH 219 H HOH 23 3 HOH HOH 220 H HOH 24 3 HOH HOH 221 H HOH 25 3 HOH HOH 222 H HOH 40 3 HOH HOH 223 H HOH 42 3 HOH HOH 224 H HOH 43 3 HOH HOH 225 H HOH 44 3 HOH HOH 226 H HOH 47 3 HOH HOH 227 H HOH 49 3 HOH HOH 228 H HOH 53 3 HOH HOH 229 H HOH 55 3 HOH HOH 230 H HOH 56 3 HOH HOH 231 H HOH 57 3 HOH HOH 232 H HOH 59 3 HOH HOH 233 H HOH 60 3 HOH HOH 234 H HOH 62 3 HOH HOH 235 H HOH 67 3 HOH HOH 236 H HOH 68 3 HOH HOH 237 H HOH 70 3 HOH HOH 238 H HOH 73 3 HOH HOH 239 H HOH 74 3 HOH HOH 240 H HOH 76 3 HOH HOH 241 H HOH 77 3 HOH HOH 242 H HOH 81 3 HOH HOH 243 H HOH 84 3 HOH HOH 244 H HOH 85 3 HOH HOH 245 H HOH 87 3 HOH HOH 246 H HOH 90 3 HOH HOH 247 H HOH 92 3 HOH HOH 248 H HOH 94 3 HOH HOH 249 H HOH 95 3 HOH HOH 250 H HOH 96 3 HOH HOH 251 H HOH 97 3 HOH HOH 252 H HOH 100 3 HOH HOH 253 H HOH 103 3 HOH HOH 254 H HOH 104 3 HOH HOH 255 H HOH 105 3 HOH HOH 256 H HOH 106 3 HOH HOH 257 H HOH 107 3 HOH HOH 258 H HOH 108 3 HOH HOH 259 H HOH 109 3 HOH HOH 260 H HOH 110 3 HOH HOH 261 H HOH 117 3 HOH HOH 262 H HOH 118 3 HOH HOH 263 H HOH 121 3 HOH HOH 264 H HOH 123 3 HOH HOH 265 H HOH 124 3 HOH HOH 266 H HOH 125 3 HOH HOH 267 H HOH 127 3 HOH HOH 268 H HOH 128 3 HOH HOH 269 H HOH 129 3 HOH HOH 270 H HOH 130 3 HOH HOH 271 H HOH 131 3 HOH HOH 272 H HOH 137 3 HOH HOH 273 H HOH 139 3 HOH HOH 274 H HOH 141 3 HOH HOH 275 H HOH 144 3 HOH HOH 276 H HOH 145 3 HOH HOH 277 H HOH 150 3 HOH HOH 278 H HOH 153 3 HOH HOH 279 H HOH 156 3 HOH HOH 280 H HOH 160 3 HOH HOH 281 H HOH 161 3 HOH HOH 282 H HOH 162 3 HOH HOH 283 H HOH 163 3 HOH HOH 284 H HOH 164 3 HOH HOH 285 H HOH 168 3 HOH HOH 286 H HOH 171 3 HOH HOH 287 H HOH 172 3 HOH HOH 288 H HOH 176 3 HOH HOH 289 H HOH 177 3 HOH HOH 290 H HOH 180 3 HOH HOH 291 H HOH 182 3 HOH HOH 292 H HOH 187 3 HOH HOH 293 H HOH 188 3 HOH HOH 294 H HOH 191 3 HOH HOH 295 H HOH 192 3 HOH HOH 296 H HOH 193 3 HOH HOH 297 H HOH 194 3 HOH HOH 298 H HOH 199 3 HOH HOH 299 H HOH 200 3 HOH HOH 300 H HOH 201 3 HOH HOH 301 H HOH 202 3 HOH HOH 302 H HOH 207 3 HOH HOH 303 H HOH 209 3 HOH HOH 304 H HOH 210 3 HOH HOH 305 H HOH 211 3 HOH HOH 306 H HOH 216 3 HOH HOH 307 H HOH 218 3 HOH HOH 308 H HOH 219 3 HOH HOH 309 H HOH 224 3 HOH HOH 310 H HOH 225 3 HOH HOH 311 H HOH 228 3 HOH HOH 312 H HOH 229 3 HOH HOH 313 H HOH 233 3 HOH HOH 314 H HOH 235 3 HOH HOH 315 H HOH 236 3 HOH HOH 316 H HOH 239 3 HOH HOH 317 H HOH 240 3 HOH HOH 318 H HOH 242 3 HOH HOH 319 H HOH 244 3 HOH HOH 320 H GLU 1 n 1 GLU 1 L ILE 2 n 2 VAL 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 27 n 28 A SER 27 L LEU 27 n 29 B LEU 27 L VAL 27 n 30 C VAL 27 L HIS 27 n 31 D HIS 27 L SER 27 n 32 E SER 27 L ASN 28 n 33 ASN 28 L GLY 29 n 34 GLY 29 L ASN 30 n 35 ASN 30 L THR 31 n 36 THR 31 L TYR 32 n 37 TYR 32 L LEU 33 n 38 LEU 33 L HIS 34 n 39 HIS 34 L TRP 35 n 40 TRP 35 L TYR 36 n 41 TYR 36 L LEU 37 n 42 LEU 37 L GLN 38 n 43 GLN 38 L LYS 39 n 44 LYS 39 L PRO 40 n 45 PRO 40 L GLY 41 n 46 GLY 41 L GLN 42 n 47 GLN 42 L SER 43 n 48 SER 43 L PRO 44 n 49 PRO 44 L LYS 45 n 50 LYS 45 L LEU 46 n 51 LEU 46 L LEU 47 n 52 LEU 47 L ILE 48 n 53 ILE 48 L TYR 49 n 54 TYR 49 L LYS 50 n 55 LYS 50 L VAL 51 n 56 VAL 51 L SER 52 n 57 SER 52 L ASN 53 n 58 ASN 53 L ARG 54 n 59 ARG 54 L PHE 55 n 60 PHE 55 L SER 56 n 61 SER 56 L GLY 57 n 62 GLY 57 L VAL 58 n 63 VAL 58 L PRO 59 n 64 PRO 59 L ASP 60 n 65 ASP 60 L ARG 61 n 66 ARG 61 L PHE 62 n 67 PHE 62 L SER 63 n 68 SER 63 L GLY 64 n 69 GLY 64 L SER 65 n 70 SER 65 L GLY 66 n 71 GLY 66 L SER 67 n 72 SER 67 L GLY 68 n 73 GLY 68 L THR 69 n 74 THR 69 L ASP 70 n 75 ASP 70 L PHE 71 n 76 PHE 71 L THR 72 n 77 THR 72 L LEU 73 n 78 LEU 73 L LYS 74 n 79 LYS 74 L ILE 75 n 80 ILE 75 L SER 76 n 81 SER 76 L ARG 77 n 82 ARG 77 L VAL 78 n 83 VAL 78 L GLU 79 n 84 GLU 79 L ALA 80 n 85 ALA 80 L GLU 81 n 86 GLU 81 L ASP 82 n 87 ASP 82 L LEU 83 n 88 LEU 83 L GLY 84 n 89 GLY 84 L VAL 85 n 90 VAL 85 L TYR 86 n 91 TYR 86 L PHE 87 n 92 PHE 87 L CYS 88 n 93 CYS 88 L SER 89 n 94 SER 89 L GLN 90 n 95 GLN 90 L SER 91 n 96 SER 91 L THR 92 n 97 THR 92 L HIS 93 n 98 HIS 93 L VAL 94 n 99 VAL 94 L PRO 95 n 100 PRO 95 L PRO 95 n 101 A PRO 95 L LEU 96 n 102 LEU 96 L THR 97 n 103 THR 97 L PHE 98 n 104 PHE 98 L GLY 99 n 105 GLY 99 L ALA 100 n 106 ALA 100 L GLY 101 n 107 GLY 101 L THR 102 n 108 THR 102 L LYS 103 n 109 LYS 103 L LEU 104 n 110 LEU 104 L GLU 105 n 111 GLU 105 L LEU 106 n 112 LEU 106 L LYS 107 n 113 LYS 107 L ARG 108 n 114 ARG 108 L ALA 109 n 115 ALA 109 L ASP 110 n 116 ASP 110 L ALA 111 n 117 ALA 111 L ALA 112 n 118 ALA 112 L PRO 113 n 119 PRO 113 L THR 114 n 120 THR 114 L VAL 115 n 121 VAL 115 L SER 116 n 122 SER 116 L ILE 117 n 123 ILE 117 L PHE 118 n 124 PHE 118 L PRO 119 n 125 PRO 119 L PRO 120 n 126 PRO 120 L SER 121 n 127 SER 121 L SER 122 n 128 SER 122 L GLU 123 n 129 GLU 123 L GLN 124 n 130 GLN 124 L LEU 125 n 131 LEU 125 L THR 126 n 132 THR 126 L SER 127 n 133 SER 127 L GLY 128 n 134 GLY 128 L GLY 129 n 135 GLY 129 L ALA 130 n 136 ALA 130 L SER 131 n 137 SER 131 L VAL 132 n 138 VAL 132 L VAL 133 n 139 VAL 133 L CYS 134 n 140 CYS 134 L PHE 135 n 141 PHE 135 L LEU 136 n 142 LEU 136 L ASN 137 n 143 ASN 137 L ASN 138 n 144 ASN 138 L PHE 139 n 145 PHE 139 L TYR 140 n 146 TYR 140 L PRO 141 n 147 PRO 141 L LYS 142 n 148 LYS 142 L ASP 143 n 149 ASP 143 L ILE 144 n 150 ILE 144 L ASN 145 n 151 ASN 145 L VAL 146 n 152 VAL 146 L LYS 147 n 153 LYS 147 L TRP 148 n 154 TRP 148 L LYS 149 n 155 LYS 149 L ILE 150 n 156 ILE 150 L ASP 151 n 157 ASP 151 L GLY 152 n 158 GLY 152 L SER 153 n 159 SER 153 L GLU 154 n 160 GLU 154 L ARG 155 n 161 ARG 155 L GLN 156 n 162 GLN 156 L ASN 157 n 163 ASN 157 L GLY 158 n 164 GLY 158 L VAL 159 n 165 VAL 159 L LEU 160 n 166 LEU 160 L ASN 161 n 167 ASN 161 L SER 162 n 168 SER 162 L TRP 163 n 169 TRP 163 L THR 164 n 170 THR 164 L ASP 165 n 171 ASP 165 L GLN 166 n 172 GLN 166 L ASP 167 n 173 ASP 167 L SER 168 n 174 SER 168 L LYS 169 n 175 LYS 169 L ASP 170 n 176 ASP 170 L SER 171 n 177 SER 171 L THR 172 n 178 THR 172 L TYR 173 n 179 TYR 173 L SER 174 n 180 SER 174 L MET 175 n 181 MET 175 L SER 176 n 182 SER 176 L SER 177 n 183 SER 177 L THR 178 n 184 THR 178 L LEU 179 n 185 LEU 179 L THR 180 n 186 THR 180 L LEU 181 n 187 LEU 181 L THR 182 n 188 THR 182 L LYS 183 n 189 LYS 183 L ASP 184 n 190 ASP 184 L GLU 185 n 191 GLU 185 L TYR 186 n 192 TYR 186 L GLU 187 n 193 GLU 187 L ARG 188 n 194 ARG 188 L HIS 189 n 195 HIS 189 L ASN 190 n 196 ASN 190 L SER 191 n 197 SER 191 L TYR 192 n 198 TYR 192 L THR 193 n 199 THR 193 L CYS 194 n 200 CYS 194 L GLU 195 n 201 GLU 195 L ALA 196 n 202 ALA 196 L THR 197 n 203 THR 197 L HIS 198 n 204 HIS 198 L LYS 199 n 205 LYS 199 L THR 200 n 206 THR 200 L SER 201 n 207 SER 201 L THR 202 n 208 THR 202 L SER 203 n 209 SER 203 L PRO 204 n 210 PRO 204 L ILE 205 n 211 ILE 205 L VAL 206 n 212 VAL 206 L LYS 207 n 213 LYS 207 L SER 208 n 214 SER 208 L PHE 209 n 215 PHE 209 L ASN 210 n 216 ASN 210 L ARG 211 n 217 ARG 211 L ASN 212 n 218 ASN 212 L GLU 213 n 219 GLU 213 L CYS 214 n 220 CYS 214 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H LYS 3 n 3 LYS 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H ARG 8 n 8 ARG 8 H GLY 9 n 9 GLY 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H GLN 19 n 19 GLN 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H ALA 23 n 23 ALA 23 H GLY 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H THR 28 n 28 THR 28 H PHE 29 n 29 PHE 29 H SER 30 n 30 SER 30 H GLY 31 n 31 GLY 31 H TYR 32 n 32 TYR 32 H ALA 33 n 33 ALA 33 H MET 34 n 34 MET 34 H SER 35 n 35 SER 35 H TRP 36 n 36 TRP 36 H PHE 37 n 37 PHE 37 H ARG 38 n 38 ARG 38 H LEU 39 n 39 LEU 39 H THR 40 n 40 THR 40 H PRO 41 n 41 PRO 41 H GLU 42 n 42 GLU 42 H LYS 43 n 43 LYS 43 H ARG 44 n 44 ARG 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H ALA 49 n 49 ALA 49 H SER 50 n 50 SER 50 H ILE 51 n 51 ILE 51 H TYR 52 n 52 TYR 52 H ASN 53 n 53 ASN 53 H GLY 54 n 54 GLY 54 H PHE 55 n 55 PHE 55 H ARG 56 n 56 ARG 56 H ILE 57 n 57 ILE 57 H HIS 58 n 58 HIS 58 H TYR 59 n 59 TYR 59 H LEU 60 n 60 LEU 60 H ASP 61 n 61 ASP 61 H SER 62 n 62 SER 62 H VAL 63 n 63 VAL 63 H LYS 64 n 64 LYS 64 H GLY 65 n 65 GLY 65 H ARG 66 n 66 ARG 66 H PHE 67 n 67 PHE 67 H THR 68 n 68 THR 68 H ILE 69 n 69 ILE 69 H SER 70 n 70 SER 70 H SER 71 n 71 SER 71 H ASP 72 n 72 ASP 72 H TYR 73 n 73 TYR 73 H ALA 74 n 74 ALA 74 H ARG 75 n 75 ARG 75 H ASN 76 n 76 ASN 76 H ILE 77 n 77 ILE 77 H LEU 78 n 78 LEU 78 H TYR 79 n 79 TYR 79 H LEU 80 n 80 LEU 80 H GLN 81 n 81 GLN 81 H MET 82 n 82 MET 82 H SER 82 n 83 A SER 82 H THR 82 n 84 B THR 82 H LEU 82 n 85 C LEU 82 H ARG 83 n 86 ARG 83 H SER 84 n 87 SER 84 H GLU 85 n 88 GLU 85 H ASP 86 n 89 ASP 86 H THR 87 n 90 THR 87 H ALA 88 n 91 ALA 88 H MET 89 n 92 MET 89 H TYR 90 n 93 TYR 90 H TYR 91 n 94 TYR 91 H CYS 92 n 95 CYS 92 H SER 93 n 96 SER 93 H ARG 94 n 97 ARG 94 H GLY 95 n 98 GLY 95 H ASP 96 n 99 ASP 96 H ALA 97 n 100 ALA 97 H TYR 98 n 101 TYR 98 H SER 99 n 102 SER 99 H ARG 100 n 103 ARG 100 H TYR 100 n 104 A TYR 100 H PHE 100 n 105 B PHE 100 H ASP 101 n 106 ASP 101 H VAL 102 n 107 VAL 102 H TRP 103 n 108 TRP 103 H GLY 104 n 109 GLY 104 H ALA 105 n 110 ALA 105 H GLY 106 n 111 GLY 106 H THR 107 n 112 THR 107 H THR 108 n 113 THR 108 H VAL 109 n 114 VAL 109 H THR 110 n 115 THR 110 H VAL 111 n 116 VAL 111 H SER 112 n 117 SER 112 H ALA 113 n 118 ALA 113 H ALA 114 n 119 ALA 114 H LYS 115 n 120 LYS 115 H THR 116 n 121 THR 116 H THR 117 n 122 THR 117 H ALA 118 n 123 ALA 118 H PRO 119 n 124 PRO 119 H SER 120 n 125 SER 120 H VAL 121 n 126 VAL 121 H TYR 122 n 127 TYR 122 H PRO 123 n 128 PRO 123 H LEU 124 n 129 LEU 124 H ALA 125 n 130 ALA 125 H PRO 126 n 131 PRO 126 H VAL 127 n 132 VAL 127 H CYS 128 n 133 CYS 128 H GLY 129 n 134 GLY 129 H ASP 130 n 135 ASP 130 H THR 131 n 136 THR 131 H THR 132 n 137 THR 132 H GLY 133 n 138 GLY 133 H SER 134 n 139 SER 134 H SER 135 n 140 SER 135 H VAL 136 n 141 VAL 136 H THR 137 n 142 THR 137 H LEU 138 n 143 LEU 138 H GLY 139 n 144 GLY 139 H CYS 140 n 145 CYS 140 H LEU 141 n 146 LEU 141 H VAL 142 n 147 VAL 142 H LYS 143 n 148 LYS 143 H GLY 144 n 149 GLY 144 H TYR 145 n 150 TYR 145 H PHE 146 n 151 PHE 146 H PRO 147 n 152 PRO 147 H GLU 148 n 153 GLU 148 H PRO 149 n 154 PRO 149 H VAL 150 n 155 VAL 150 H THR 151 n 156 THR 151 H LEU 152 n 157 LEU 152 H THR 153 n 158 THR 153 H TRP 154 n 159 TRP 154 H ASN 155 n 160 ASN 155 H SER 156 n 161 SER 156 H GLY 157 n 162 GLY 157 H SER 158 n 163 SER 158 H LEU 159 n 164 LEU 159 H SER 160 n 165 SER 160 H SER 161 n 166 SER 161 H GLY 162 n 167 GLY 162 H VAL 163 n 168 VAL 163 H HIS 164 n 169 HIS 164 H THR 165 n 170 THR 165 H PHE 166 n 171 PHE 166 H PRO 167 n 172 PRO 167 H ALA 168 n 173 ALA 168 H VAL 169 n 174 VAL 169 H LEU 170 n 175 LEU 170 H GLN 171 n 176 GLN 171 H SER 172 n 177 SER 172 H ASP 173 n 178 ASP 173 H LEU 174 n 179 LEU 174 H TYR 175 n 180 TYR 175 H THR 176 n 181 THR 176 H LEU 177 n 182 LEU 177 H SER 178 n 183 SER 178 H SER 179 n 184 SER 179 H SER 180 n 185 SER 180 H VAL 181 n 186 VAL 181 H THR 182 n 187 THR 182 H VAL 183 n 188 VAL 183 H THR 184 n 189 THR 184 H SER 185 n 190 SER 185 H SER 186 n 191 SER 186 H THR 187 n 192 THR 187 H TRP 188 n 193 TRP 188 H PRO 189 n 194 PRO 189 H SER 190 n 195 SER 190 H GLN 191 n 196 GLN 191 H SER 192 n 197 SER 192 H ILE 193 n 198 ILE 193 H THR 194 n 199 THR 194 H CYS 195 n 200 CYS 195 H ASN 196 n 201 ASN 196 H VAL 197 n 202 VAL 197 H ALA 198 n 203 ALA 198 H HIS 199 n 204 HIS 199 H PRO 200 n 205 PRO 200 H ALA 201 n 206 ALA 201 H SER 202 n 207 SER 202 H SER 203 n 208 SER 203 H THR 204 n 209 THR 204 H LYS 205 n 210 LYS 205 H VAL 206 n 211 VAL 206 H ASP 207 n 212 ASP 207 H LYS 208 n 213 LYS 208 H LYS 209 n 214 LYS 209 H ILE 210 n 215 ILE 210 H GLU 211 n 216 GLU 211 H PRO 212 n 217 PRO 212 H ARG 213 n 218 ARG 213 H author_and_software_defined_assembly PISA 2 dimeric 3640 -26 20030 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O SER 7 A O SER 7 L N SER 22 A N SER 22 L O CYS 23 A O CYS 23 L N PHE 71 A N PHE 76 L N LYS 74 A N LYS 79 L O SER 63 A O SER 68 L O ASN 53 A O ASN 58 L N TYR 49 A N TYR 54 L O ILE 48 A O ILE 53 L N TRP 35 A N TRP 40 L N GLN 38 A N GLN 43 L O VAL 85 A O VAL 90 L N GLN 90 A N GLN 95 L O THR 97 A O THR 103 L O ASN 53 A O ASN 58 L N TYR 49 A N TYR 54 L O ILE 48 A O ILE 53 L N TRP 35 A N TRP 40 L N GLN 38 A N GLN 43 L O VAL 85 A O VAL 90 L N TYR 86 A N TYR 91 L O THR 102 A O THR 108 L O LYS 103 A O LYS 109 L N LEU 11 A N LEU 11 L N PHE 118 A N PHE 124 L O VAL 133 A O VAL 139 L N PHE 139 A N PHE 145 L O TYR 173 A O TYR 179 L N THR 178 A N THR 184 L O LEU 160 A O LEU 166 L N ARG 155 A N ARG 161 L O TRP 148 A O TRP 154 L O LYS 149 A O LYS 155 L N THR 193 A N THR 199 L O ALA 196 A O ALA 202 L N ILE 205 A N ILE 211 H N VAL 5 B N VAL 5 H O ALA 23 B O ALA 23 H O CYS 22 B O CYS 22 H N LEU 78 B N LEU 78 H N GLN 81 B N GLN 81 H O THR 68 B O THR 68 H N HIS 58 B N HIS 58 H O SER 50 B O SER 50 H N ILE 51 B N ILE 51 H O MET 34 B O MET 34 H N LEU 39 B N LEU 39 H O MET 89 B O MET 92 H N HIS 58 B N HIS 58 H O SER 50 B O SER 50 H N ILE 51 B N ILE 51 H O MET 34 B O MET 34 H N LEU 39 B N LEU 39 H O MET 89 B O MET 92 H N TYR 90 B N TYR 93 H O THR 107 B O THR 112 H N THR 110 B N THR 115 H O GLY 10 B O GLY 10 H N LEU 124 B N LEU 129 H O GLY 139 B O GLY 144 H O TYR 145 B O TYR 150 H N TYR 175 B N TYR 180 H O SER 180 B O SER 185 H N HIS 164 B N HIS 169 H N LEU 124 B N LEU 129 H O GLY 139 B O GLY 144 H O TYR 145 B O TYR 150 H N TYR 175 B N TYR 180 H O THR 176 B O THR 181 H N VAL 169 B N VAL 174 H O THR 153 B O THR 158 H N ASN 196 B N ASN 201 H N HIS 199 B N HIS 204 H O THR 204 B O THR 209 1 L L OD1 O ASN HOH 30 216 2.03 1_555 1_556 1 L L O O HOH HOH 289 301 2.04 1_555 1_556 1 L L O O HOH HOH 220 252 2.11 1_555 1_554 1 L L NZ OE1 LYS GLU 50 187 2.18 1_555 1_556 1 L VAL 51 70.02 -53.12 1 H LYS 43 76.10 33.44 1 H ASN 53 41.27 29.40 1 H ALA 88 179.75 -178.94 1 H ASP 173 59.60 5.75 0.247 0.206 0.206 0.206 1.85 20.0 1964 39883 39285 RANDOM 1 0 0 MOLECULAR REPLACEMENT Engh & Huber 1.85 20.0 246 3611 0 0 3365 1.4 0.006 26.6 .83 23 1.85 20 1JGV 39285 39285 2 2 0.056 1 14 2.2 98.5 0.487 1.85 1.89 2.2 98.8 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS Antibody Light Chain, Antibody Heavy Chain STRUCTURAL BASIS FOR DISFAVORED ELIMINATION REACTION IN CATALYTIC ANTIBODY 1D4 1 N N 2 N N 3 N N 3 N N L GLU 79 A GLU 84 HELX_P L LEU 83 A LEU 88 5 1 5 L SER 121 A SER 127 HELX_P L SER 127 A SER 133 1 2 7 L LYS 183 A LYS 189 HELX_P L GLU 187 A GLU 193 1 3 5 L ASN 212 A ASN 218 HELX_P L CYS 214 A CYS 220 5 4 3 H ASP 61 B ASP 61 HELX_P H LYS 64 B LYS 64 5 5 4 H ARG 83 B ARG 86 HELX_P H THR 87 B THR 90 5 6 5 H SER 156 B SER 161 HELX_P H SER 158 B SER 163 5 7 3 H PRO 200 B PRO 205 HELX_P H SER 203 B SER 208 5 8 4 disulf 2.038 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 93 1_555 disulf 2.037 L CYS 134 A SG CYS 140 1_555 L CYS 194 A SG CYS 200 1_555 disulf 2.027 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 95 1_555 disulf 2.031 H CYS 140 B SG CYS 145 1_555 H CYS 195 B SG CYS 200 1_555 IMMUNE SYSTEM IgG fold, IMMUNE SYSTEM L SER 7 A SER 7 1 L PRO 8 A PRO 8 -0.27 L VAL 94 A VAL 99 1 L PRO 95 A PRO 100 -0.25 L PRO 95 A PRO 100 A 1 L PRO 95 A PRO 101 -0.09 L TYR 140 A TYR 146 1 L PRO 141 A PRO 147 -0.15 H PHE 146 B PHE 151 1 H PRO 147 B PRO 152 -0.06 H GLU 148 B GLU 153 1 H PRO 149 B PRO 154 -0.09 H TRP 188 B TRP 193 1 H PRO 189 B PRO 194 0.13 AAA67525 GB 1 1 522337 DVVMTQSPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPPTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 1JGV PDB 2 1JGV 1 219 1JGV 1 214 522337 L 1 1 220 1 213 1JGV 1 213 1JGV H 2 1 218 1 ASP SEE REMARK 999 GLU 1 1JGV L 522337 GB 1 1 1 ILE SEE REMARK 999 LEU 27 1JGV B L 522337 GB 29 29 1 GLU SEE REMARK 999 HIS 34 1JGV L 522337 GB 39 39 1 TYR SEE REMARK 999 PHE 87 1JGV L 522337 GB 92 92 1 PHE SEE REMARK 999 SER 89 1JGV L 522337 GB 94 94 1 GLY SEE REMARK 999 SER 91 1JGV L 522337 GB 96 96 1 SER SEE REMARK 999 THR 97 1JGV L 522337 GB 97 103 1 SEE REMARK 999 LEU 96 1JGV L 522337 GB 102 1 GLY SEE REMARK 999 ALA 100 1JGV L 522337 GB 105 106 1 ASN SEE REMARK 999 LYS 103 1JGV L 522337 GB 108 109 1 ILE SEE REMARK 999 LEU 106 1JGV L 522337 GB 111 112 4 5 6 4 4 4 5 6 4 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L SER 7 A SER 7 L ALA 19 A ALA 19 L SER 25 A SER 25 L ASP 70 A ASP 75 L ILE 75 A ILE 80 L PHE 62 A PHE 67 L SER 67 A SER 72 L ASN 53 A ASN 58 L ARG 54 A ARG 59 L LYS 45 A LYS 50 L TYR 49 A TYR 54 L LEU 33 A LEU 38 L GLN 38 A GLN 43 L GLY 84 A GLY 89 L GLN 90 A GLN 95 L THR 97 A THR 103 L PHE 98 A PHE 104 L ASN 53 A ASN 58 L ARG 54 A ARG 59 L LYS 45 A LYS 50 L TYR 49 A TYR 54 L LEU 33 A LEU 38 L GLN 38 A GLN 43 L GLY 84 A GLY 89 L GLN 90 A GLN 95 L THR 102 A THR 108 L LEU 106 A LEU 112 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 114 A THR 120 L PHE 118 A PHE 124 L GLY 129 A GLY 135 L PHE 139 A PHE 145 L TYR 173 A TYR 179 L THR 182 A THR 188 L VAL 159 A VAL 165 L TRP 163 A TRP 169 L SER 153 A SER 159 L ARG 155 A ARG 161 L ASN 145 A ASN 151 L ILE 150 A ILE 156 L SER 191 A SER 197 L THR 197 A THR 203 L ILE 205 A ILE 211 L ASN 210 A ASN 216 H LYS 3 B LYS 3 H GLU 6 B GLU 6 H LEU 18 B LEU 18 H SER 25 B SER 25 H ILE 77 B ILE 77 H MET 82 B MET 82 H PHE 67 B PHE 67 H ASP 72 B ASP 72 H ARG 56 B ARG 56 H TYR 59 B TYR 59 H LEU 45 B LEU 45 H TYR 52 B TYR 52 H TYR 32 B TYR 32 H LEU 39 B LEU 39 H ALA 88 B ALA 91 H ASP 96 B ASP 99 H ARG 56 B ARG 56 H TYR 59 B TYR 59 H LEU 45 B LEU 45 H TYR 52 B TYR 52 H TYR 32 B TYR 32 H LEU 39 B LEU 39 H ALA 88 B ALA 91 H ASP 96 B ASP 99 H THR 107 B THR 112 H VAL 111 B VAL 116 H GLY 10 B GLY 10 H VAL 12 B VAL 12 H SER 120 B SER 125 H LEU 124 B LEU 129 H SER 135 B SER 140 H TYR 145 B TYR 150 H LEU 174 B LEU 179 H THR 184 B THR 189 H VAL 163 B VAL 168 H THR 165 B THR 170 H SER 120 B SER 125 H LEU 124 B LEU 129 H SER 135 B SER 140 H TYR 145 B TYR 150 H LEU 174 B LEU 179 H THR 184 B THR 189 H VAL 169 B VAL 174 H GLN 171 B GLN 176 H THR 151 B THR 156 H TRP 154 B TRP 159 H THR 194 B THR 199 H HIS 199 B HIS 204 H THR 204 B THR 209 H LYS 209 B LYS 214 4 P 1 21 1