0.030312
0.000000
0.000000
0.000000
0.014413
0.000000
0.000000
0.000000
0.013872
0.00000
0.00000
0.00000
Schroder, J.
Henke, A.
Wenzel, H.
Brandstetter, H.
Stammler, H.G.
Stammler, A.
Pfeiffer, W.D.
Tschesche, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90
90
90
32.99
69.38
72.09
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C13 H14 Cl N3 S
279.788
BUT-3-ENYL-[5-(4-CHLORO-PHENYL)-3,6-DIHYDRO-[1,3,4]THIADIAZIN-2-YLIDENE]-AMINE
N-ALLYL-5-(4-CHLORO-PHENYL)-6H-1,3,4-THIADIAZIN-2-AMINE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
S
N
171
N
CL
N
172
N
N
N
173
N
N
N
174
N
N
Y
175
N
C
Y
176
N
C
Y
177
N
C
Y
178
N
C
Y
179
N
C
Y
180
N
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
N
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
S
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
R
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
N
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
Y
169
N
doub
Y
170
N
sing
N
171
N
sing
Y
172
N
sing
N
173
N
sing
Y
174
N
doub
Y
175
N
sing
N
176
N
sing
Y
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
44
3231
3243
10.1021/jm010887p
11563922
Structure-based design and synthesis of potent matrix metalloproteinase inhibitors derived from a 6H-1,3,4-thiadiazine scaffold.
2001
10.2210/pdb1jh1/pdb
pdb_00001jh1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
275
1
Monochromator
IMAGE PLATE
2000-06-20
MARRESEARCH
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
17612.115
Matrix Metalloproteinase 8
3.4.24.34
MMP-8 catalytic domain
1
man
polymer
40.078
CALCIUM ION
2
syn
non-polymer
65.409
ZINC ION
2
syn
non-polymer
279.788
BUT-3-ENYL-[5-(4-CHLORO-PHENYL)-3,6-DIHYDRO-[1,3,4]THIADIAZIN-2-YLIDENE]-AMINE
1
syn
non-polymer
18.015
water
26
nat
water
NEUTROPHIL COLLAGENASE
no
no
NPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAF
QPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG
NPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAF
QPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
MMP-8
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
PLASMID
pET
1
2.34
47.46
VAPOR DIFFUSION, SITTING DROP
6.0
0.1M MES, 10% PEG6K, 10mM CaCl2, 100mM NaCl, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-12-27
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-03-13
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2001-06-27
REL
REL
CA
CALCIUM ION
ZN
ZINC ION
JST
BUT-3-ENYL-[5-(4-CHLORO-PHENYL)-3,6-DIHYDRO-[1,3,4]THIADIAZIN-2-YLIDENE]-AMINE
HOH
water
MMP-8
other
CA
996
2
CA
CA
996
A
CA
997
2
CA
CA
997
A
ZN
998
3
ZN
ZN
998
A
ZN
999
3
ZN
ZN
999
A
JST
101
4
JST
JST
1000
A
HOH
1
5
HOH
HOH
1
A
HOH
2
5
HOH
HOH
2
A
HOH
3
5
HOH
HOH
3
A
HOH
4
5
HOH
HOH
4
A
HOH
5
5
HOH
HOH
5
A
HOH
6
5
HOH
HOH
6
A
HOH
7
5
HOH
HOH
7
A
HOH
8
5
HOH
HOH
8
A
HOH
9
5
HOH
HOH
9
A
HOH
10
5
HOH
HOH
10
A
HOH
11
5
HOH
HOH
11
A
HOH
12
5
HOH
HOH
12
A
HOH
13
5
HOH
HOH
13
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
16
5
HOH
HOH
16
A
HOH
17
5
HOH
HOH
17
A
HOH
18
5
HOH
HOH
18
A
HOH
19
5
HOH
HOH
19
A
HOH
20
5
HOH
HOH
20
A
HOH
21
5
HOH
HOH
21
A
HOH
22
5
HOH
HOH
22
A
HOH
23
5
HOH
HOH
23
A
HOH
24
5
HOH
HOH
24
A
HOH
25
5
HOH
HOH
25
A
HOH
26
5
HOH
HOH
26
A
ASN
85
n
1
ASN
85
A
PRO
86
n
2
PRO
86
A
LYS
87
n
3
LYS
87
A
TRP
88
n
4
TRP
88
A
GLU
89
n
5
GLU
89
A
ARG
90
n
6
ARG
90
A
THR
91
n
7
THR
91
A
ASN
92
n
8
ASN
92
A
LEU
93
n
9
LEU
93
A
THR
94
n
10
THR
94
A
TYR
95
n
11
TYR
95
A
ARG
96
n
12
ARG
96
A
ILE
97
n
13
ILE
97
A
ARG
98
n
14
ARG
98
A
ASN
99
n
15
ASN
99
A
TYR
100
n
16
TYR
100
A
THR
101
n
17
THR
101
A
PRO
102
n
18
PRO
102
A
GLN
103
n
19
GLN
103
A
LEU
104
n
20
LEU
104
A
SER
105
n
21
SER
105
A
GLU
106
n
22
GLU
106
A
ALA
107
n
23
ALA
107
A
GLU
108
n
24
GLU
108
A
VAL
109
n
25
VAL
109
A
GLU
110
n
26
GLU
110
A
ARG
111
n
27
ARG
111
A
ALA
112
n
28
ALA
112
A
ILE
113
n
29
ILE
113
A
LYS
114
n
30
LYS
114
A
ASP
115
n
31
ASP
115
A
ALA
116
n
32
ALA
116
A
PHE
117
n
33
PHE
117
A
GLU
118
n
34
GLU
118
A
LEU
119
n
35
LEU
119
A
TRP
120
n
36
TRP
120
A
SER
121
n
37
SER
121
A
VAL
122
n
38
VAL
122
A
ALA
123
n
39
ALA
123
A
SER
124
n
40
SER
124
A
PRO
125
n
41
PRO
125
A
LEU
126
n
42
LEU
126
A
ILE
127
n
43
ILE
127
A
PHE
128
n
44
PHE
128
A
THR
129
n
45
THR
129
A
ARG
130
n
46
ARG
130
A
ILE
131
n
47
ILE
131
A
SER
132
n
48
SER
132
A
GLN
133
n
49
GLN
133
A
GLY
134
n
50
GLY
134
A
GLU
135
n
51
GLU
135
A
ALA
136
n
52
ALA
136
A
ASP
137
n
53
ASP
137
A
ILE
138
n
54
ILE
138
A
ASN
139
n
55
ASN
139
A
ILE
140
n
56
ILE
140
A
ALA
141
n
57
ALA
141
A
PHE
142
n
58
PHE
142
A
TYR
143
n
59
TYR
143
A
GLN
144
n
60
GLN
144
A
ARG
145
n
61
ARG
145
A
ASP
146
n
62
ASP
146
A
HIS
147
n
63
HIS
147
A
GLY
148
n
64
GLY
148
A
ASP
149
n
65
ASP
149
A
ASN
150
n
66
ASN
150
A
SER
151
n
67
SER
151
A
PRO
152
n
68
PRO
152
A
PHE
153
n
69
PHE
153
A
ASP
154
n
70
ASP
154
A
GLY
155
n
71
GLY
155
A
PRO
156
n
72
PRO
156
A
ASN
157
n
73
ASN
157
A
GLY
158
n
74
GLY
158
A
ILE
159
n
75
ILE
159
A
LEU
160
n
76
LEU
160
A
ALA
161
n
77
ALA
161
A
HIS
162
n
78
HIS
162
A
ALA
163
n
79
ALA
163
A
PHE
164
n
80
PHE
164
A
GLN
165
n
81
GLN
165
A
PRO
166
n
82
PRO
166
A
GLY
167
n
83
GLY
167
A
GLN
168
n
84
GLN
168
A
GLY
169
n
85
GLY
169
A
ILE
170
n
86
ILE
170
A
GLY
171
n
87
GLY
171
A
GLY
172
n
88
GLY
172
A
ASP
173
n
89
ASP
173
A
ALA
174
n
90
ALA
174
A
HIS
175
n
91
HIS
175
A
PHE
176
n
92
PHE
176
A
ASP
177
n
93
ASP
177
A
ALA
178
n
94
ALA
178
A
GLU
179
n
95
GLU
179
A
GLU
180
n
96
GLU
180
A
THR
181
n
97
THR
181
A
TRP
182
n
98
TRP
182
A
THR
183
n
99
THR
183
A
ASN
184
n
100
ASN
184
A
THR
185
n
101
THR
185
A
SER
186
n
102
SER
186
A
ALA
187
n
103
ALA
187
A
ASN
188
n
104
ASN
188
A
TYR
189
n
105
TYR
189
A
ASN
190
n
106
ASN
190
A
LEU
191
n
107
LEU
191
A
PHE
192
n
108
PHE
192
A
LEU
193
n
109
LEU
193
A
VAL
194
n
110
VAL
194
A
ALA
195
n
111
ALA
195
A
ALA
196
n
112
ALA
196
A
HIS
197
n
113
HIS
197
A
GLU
198
n
114
GLU
198
A
PHE
199
n
115
PHE
199
A
GLY
200
n
116
GLY
200
A
HIS
201
n
117
HIS
201
A
SER
202
n
118
SER
202
A
LEU
203
n
119
LEU
203
A
GLY
204
n
120
GLY
204
A
LEU
205
n
121
LEU
205
A
ALA
206
n
122
ALA
206
A
HIS
207
n
123
HIS
207
A
SER
208
n
124
SER
208
A
SER
209
n
125
SER
209
A
ASP
210
n
126
ASP
210
A
PRO
211
n
127
PRO
211
A
GLY
212
n
128
GLY
212
A
ALA
213
n
129
ALA
213
A
LEU
214
n
130
LEU
214
A
MET
215
n
131
MET
215
A
TYR
216
n
132
TYR
216
A
PRO
217
n
133
PRO
217
A
ASN
218
n
134
ASN
218
A
TYR
219
n
135
TYR
219
A
ALA
220
n
136
ALA
220
A
PHE
221
n
137
PHE
221
A
ARG
222
n
138
ARG
222
A
GLU
223
n
139
GLU
223
A
THR
224
n
140
THR
224
A
SER
225
n
141
SER
225
A
ASN
226
n
142
ASN
226
A
TYR
227
n
143
TYR
227
A
SER
228
n
144
SER
228
A
LEU
229
n
145
LEU
229
A
PRO
230
n
146
PRO
230
A
GLN
231
n
147
GLN
231
A
ASP
232
n
148
ASP
232
A
ASP
233
n
149
ASP
233
A
ILE
234
n
150
ILE
234
A
ASP
235
n
151
ASP
235
A
GLY
236
n
152
GLY
236
A
ILE
237
n
153
ILE
237
A
GLN
238
n
154
GLN
238
A
ALA
239
n
155
ALA
239
A
ILE
240
n
156
ILE
240
A
TYR
241
n
157
TYR
241
A
GLY
242
n
158
GLY
242
A
author_defined_assembly
1
monomeric
A
HOH
22
G
O
HOH
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
137
A
O
ASP
53
1_555
73.7
A
HOH
22
G
O
HOH
1_555
A
CA
996
B
CA
CA
1_555
A
GLY
169
A
O
GLY
85
1_555
125.2
A
ASP
137
A
O
ASP
53
1_555
A
CA
996
B
CA
CA
1_555
A
GLY
169
A
O
GLY
85
1_555
128.5
A
HOH
22
G
O
HOH
1_555
A
CA
996
B
CA
CA
1_555
A
GLY
171
A
O
GLY
87
1_555
84.4
A
ASP
137
A
O
ASP
53
1_555
A
CA
996
B
CA
CA
1_555
A
GLY
171
A
O
GLY
87
1_555
108.5
A
GLY
169
A
O
GLY
85
1_555
A
CA
996
B
CA
CA
1_555
A
GLY
171
A
O
GLY
87
1_555
119.8
A
HOH
22
G
O
HOH
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD1
ASP
89
1_555
135.4
A
ASP
137
A
O
ASP
53
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD1
ASP
89
1_555
61.7
A
GLY
169
A
O
GLY
85
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD1
ASP
89
1_555
85.4
A
GLY
171
A
O
GLY
87
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD1
ASP
89
1_555
109.3
A
HOH
22
G
O
HOH
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD2
ASP
89
1_555
169.4
A
ASP
137
A
O
ASP
53
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD2
ASP
89
1_555
100.0
A
GLY
169
A
O
GLY
85
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD2
ASP
89
1_555
52.1
A
GLY
171
A
O
GLY
87
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD2
ASP
89
1_555
105.8
A
ASP
173
A
OD1
ASP
89
1_555
A
CA
996
B
CA
CA
1_555
A
ASP
173
A
OD2
ASP
89
1_555
39.0
A
HIS
147
A
NE2
HIS
63
1_555
A
ZN
998
D
ZN
ZN
1_555
A
ASP
149
A
OD2
ASP
65
1_555
111.5
A
HIS
147
A
NE2
HIS
63
1_555
A
ZN
998
D
ZN
ZN
1_555
A
HIS
162
A
NE2
HIS
78
1_555
115.3
A
ASP
149
A
OD2
ASP
65
1_555
A
ZN
998
D
ZN
ZN
1_555
A
HIS
162
A
NE2
HIS
78
1_555
97.3
A
HIS
147
A
NE2
HIS
63
1_555
A
ZN
998
D
ZN
ZN
1_555
A
HIS
175
A
ND1
HIS
91
1_555
107.6
A
ASP
149
A
OD2
ASP
65
1_555
A
ZN
998
D
ZN
ZN
1_555
A
HIS
175
A
ND1
HIS
91
1_555
103.2
A
HIS
162
A
NE2
HIS
78
1_555
A
ZN
998
D
ZN
ZN
1_555
A
HIS
175
A
ND1
HIS
91
1_555
120.7
A
ASP
154
A
OD1
ASP
70
1_555
A
CA
997
C
CA
CA
1_555
A
GLY
155
A
O
GLY
71
1_555
100.3
A
ASP
154
A
OD1
ASP
70
1_555
A
CA
997
C
CA
CA
1_555
A
ASN
157
A
O
ASN
73
1_555
94.5
A
GLY
155
A
O
GLY
71
1_555
A
CA
997
C
CA
CA
1_555
A
ASN
157
A
O
ASN
73
1_555
69.1
A
ASP
154
A
OD1
ASP
70
1_555
A
CA
997
C
CA
CA
1_555
A
ILE
159
A
O
ILE
75
1_555
76.7
A
GLY
155
A
O
GLY
71
1_555
A
CA
997
C
CA
CA
1_555
A
ILE
159
A
O
ILE
75
1_555
173.5
A
ASN
157
A
O
ASN
73
1_555
A
CA
997
C
CA
CA
1_555
A
ILE
159
A
O
ILE
75
1_555
116.8
A
ASP
154
A
OD1
ASP
70
1_555
A
CA
997
C
CA
CA
1_555
A
ASP
177
A
OD2
ASP
93
1_555
84.4
A
GLY
155
A
O
GLY
71
1_555
A
CA
997
C
CA
CA
1_555
A
ASP
177
A
OD2
ASP
93
1_555
98.1
A
ASN
157
A
O
ASN
73
1_555
A
CA
997
C
CA
CA
1_555
A
ASP
177
A
OD2
ASP
93
1_555
166.8
A
ILE
159
A
O
ILE
75
1_555
A
CA
997
C
CA
CA
1_555
A
ASP
177
A
OD2
ASP
93
1_555
75.9
A
ASP
154
A
OD1
ASP
70
1_555
A
CA
997
C
CA
CA
1_555
A
GLU
180
A
OE2
GLU
96
1_555
170.9
A
GLY
155
A
O
GLY
71
1_555
A
CA
997
C
CA
CA
1_555
A
GLU
180
A
OE2
GLU
96
1_555
79.7
A
ASN
157
A
O
ASN
73
1_555
A
CA
997
C
CA
CA
1_555
A
GLU
180
A
OE2
GLU
96
1_555
76.9
A
ILE
159
A
O
ILE
75
1_555
A
CA
997
C
CA
CA
1_555
A
GLU
180
A
OE2
GLU
96
1_555
104.2
A
ASP
177
A
OD2
ASP
93
1_555
A
CA
997
C
CA
CA
1_555
A
GLU
180
A
OE2
GLU
96
1_555
104.7
A
HIS
197
A
NE2
HIS
113
1_555
A
ZN
999
E
ZN
ZN
1_555
A
HIS
201
A
NE2
HIS
117
1_555
103.2
A
HIS
197
A
NE2
HIS
113
1_555
A
ZN
999
E
ZN
ZN
1_555
A
HIS
207
A
NE2
HIS
123
1_555
95.8
A
HIS
201
A
NE2
HIS
117
1_555
A
ZN
999
E
ZN
ZN
1_555
A
HIS
207
A
NE2
HIS
123
1_555
101.0
A
HIS
197
A
NE2
HIS
113
1_555
A
ZN
999
E
ZN
ZN
1_555
A
JST
1000
F
N3
JST
1_555
116.5
A
HIS
201
A
NE2
HIS
117
1_555
A
ZN
999
E
ZN
ZN
1_555
A
JST
1000
F
N3
JST
1_555
105.0
A
HIS
207
A
NE2
HIS
123
1_555
A
ZN
999
E
ZN
ZN
1_555
A
JST
1000
F
N3
JST
1_555
131.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
129
A
N
THR
45
A
O
LEU
93
A
O
LEU
9
A
O
THR
94
A
O
THR
10
A
N
ILE
138
A
N
ILE
54
A
O
ASN
139
A
O
ASN
55
A
N
ALA
174
A
N
ALA
90
A
N
HIS
175
A
N
HIS
91
A
O
HIS
162
A
O
HIS
78
1
A
CE
MET
215
A
CE
MET
131
0
Y
1
A
CD
ARG
222
A
CD
ARG
138
0
Y
1
A
NE
ARG
222
A
NE
ARG
138
0
Y
1
A
CZ
ARG
222
A
CZ
ARG
138
0
Y
1
A
NH1
ARG
222
A
NH1
ARG
138
0
Y
1
A
NH2
ARG
222
A
NH2
ARG
138
0
Y
1
A
C13
JST
1000
F
C13
JST
1
1
N
1
A
ARG
145
31.77
-123.26
1
A
ASP
149
-141.26
26.38
1
A
ASN
150
60.00
16.95
1
A
PRO
156
-38.01
137.61
1
A
ASN
157
56.56
-174.85
1
A
ALA
161
174.14
-173.38
1
A
THR
185
-100.20
-150.87
1
A
ALA
220
-172.56
133.75
1
A
TYR
241
-99.62
-120.16
11.3
4.2
0
0
3.9
0
-8.1
0.2640000
0.2110000
0.2110000
0.2110000
2.7
50.0
191
4893
4174
85.3
random
1
isotropic
THROUGHOUT
2.0
0.0
MOLECULAR REPLACEMENT
MMP-8
Engh & Huber
2.7
50.0
26
1296
21
0
1249
0.006961
1.27
48
2.7
50.0
1JH1
4893
4174
2
3
0.0920000
1
5.5
2.8
85.3
0.3200000
2.7
2.8
1.9
72.4
phasing
AMoRE
refinement
CNS
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
Crystal Structure of MMP-8 complexed with a 6H-1,3,4-thiadiazine derived inhibitor
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
SER
105
A
SER
21
HELX_P
A
VAL
122
A
VAL
38
1
1
18
A
ASN
190
A
ASN
106
HELX_P
A
LEU
203
A
LEU
119
1
2
14
A
PRO
230
A
PRO
146
HELX_P
A
TYR
241
A
TYR
157
1
3
12
metalc
2.667
A
HOH
22
G
O
HOH
1_555
A
CA
996
B
CA
CA
1_555
metalc
2.692
A
ASP
137
A
O
ASP
53
1_555
A
CA
996
B
CA
CA
1_555
metalc
2.201
A
HIS
147
A
NE2
HIS
63
1_555
A
ZN
998
D
ZN
ZN
1_555
metalc
2.192
A
ASP
149
A
OD2
ASP
65
1_555
A
ZN
998
D
ZN
ZN
1_555
metalc
2.783
A
ASP
154
A
OD1
ASP
70
1_555
A
CA
997
C
CA
CA
1_555
metalc
2.521
A
GLY
155
A
O
GLY
71
1_555
A
CA
997
C
CA
CA
1_555
metalc
2.631
A
ASN
157
A
O
ASN
73
1_555
A
CA
997
C
CA
CA
1_555
metalc
2.754
A
ILE
159
A
O
ILE
75
1_555
A
CA
997
C
CA
CA
1_555
metalc
2.499
A
HIS
162
A
NE2
HIS
78
1_555
A
ZN
998
D
ZN
ZN
1_555
metalc
2.580
A
GLY
169
A
O
GLY
85
1_555
A
CA
996
B
CA
CA
1_555
metalc
2.577
A
GLY
171
A
O
GLY
87
1_555
A
CA
996
B
CA
CA
1_555
metalc
3.110
A
ASP
173
A
OD1
ASP
89
1_555
A
CA
996
B
CA
CA
1_555
metalc
3.398
A
ASP
173
A
OD2
ASP
89
1_555
A
CA
996
B
CA
CA
1_555
metalc
2.293
A
HIS
175
A
ND1
HIS
91
1_555
A
ZN
998
D
ZN
ZN
1_555
metalc
2.721
A
ASP
177
A
OD2
ASP
93
1_555
A
CA
997
C
CA
CA
1_555
metalc
2.639
A
GLU
180
A
OE2
GLU
96
1_555
A
CA
997
C
CA
CA
1_555
metalc
2.245
A
HIS
197
A
NE2
HIS
113
1_555
A
ZN
999
E
ZN
ZN
1_555
metalc
2.269
A
HIS
201
A
NE2
HIS
117
1_555
A
ZN
999
E
ZN
ZN
1_555
metalc
2.192
A
HIS
207
A
NE2
HIS
123
1_555
A
ZN
999
E
ZN
ZN
1_555
metalc
2.543
A
ZN
999
E
ZN
ZN
1_555
A
JST
1000
F
N3
JST
1_555
HYDROLASE
Collagenase, Inhibitor, thiadiazine, HYDROLASE
A
ASN
188
A
ASN
104
1
A
TYR
189
A
TYR
105
0.03
MMP8_HUMAN
UNP
1
105
P22894
LTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGIL
AHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAI
YG
105
262
1JH1
85
242
P22894
A
1
1
158
5
parallel
parallel
parallel
anti-parallel
A
ILE
127
A
ILE
43
A
ARG
130
A
ARG
46
A
ASN
92
A
ASN
8
A
ILE
97
A
ILE
13
A
ILE
138
A
ILE
54
A
TYR
143
A
TYR
59
A
ALA
174
A
ALA
90
A
ASP
177
A
ASP
93
A
ALA
161
A
ALA
77
A
ALA
163
A
ALA
79
BINDING SITE FOR RESIDUE CA A 996
A
CA
996
Software
5
BINDING SITE FOR RESIDUE CA A 997
A
CA
997
Software
6
BINDING SITE FOR RESIDUE ZN A 998
A
ZN
998
Software
4
BINDING SITE FOR RESIDUE ZN A 999
A
ZN
999
Software
4
BINDING SITE FOR RESIDUE JST A 1000
A
JST
1000
Software
8
A
HOH
22
G
HOH
5
1_555
A
ASP
137
A
ASP
53
5
1_555
A
GLY
169
A
GLY
85
5
1_555
A
GLY
171
A
GLY
87
5
1_555
A
ASP
173
A
ASP
89
5
1_555
A
ASP
154
A
ASP
70
6
1_555
A
GLY
155
A
GLY
71
6
1_555
A
ASN
157
A
ASN
73
6
1_555
A
ILE
159
A
ILE
75
6
1_555
A
ASP
177
A
ASP
93
6
1_555
A
GLU
180
A
GLU
96
6
1_555
A
HIS
147
A
HIS
63
4
1_555
A
ASP
149
A
ASP
65
4
1_555
A
HIS
162
A
HIS
78
4
1_555
A
HIS
175
A
HIS
91
4
1_555
A
HIS
197
A
HIS
113
4
1_555
A
HIS
201
A
HIS
117
4
1_555
A
HIS
207
A
HIS
123
4
1_555
A
JST
1000
F
JST
4
1_555
A
HOH
1
G
HOH
8
1_555
A
ALA
161
A
ALA
77
8
1_555
A
HIS
162
A
HIS
78
8
1_555
A
ALA
163
A
ALA
79
8
1_555
A
HIS
197
A
HIS
113
8
1_555
A
GLU
198
A
GLU
114
8
1_555
A
HIS
201
A
HIS
117
8
1_555
A
ZN
999
E
ZN
8
1_555
19
P 21 21 21