1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Guijarro, J.I.
Pintar, A.
Prochnicka-Chalufour, A.
Guez, V.
Gilquin, B.
Bedouelle, H.
Delepierre, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
10
311
317
10.1016/S0969-2126(02)00699-8
12005430
Structure and Dynamics of the Anticodon Arm Binding Domain of Bacillus stearothermophilus
Tyrosyl-tRNA Synthetase
2002
NE
FEBS Lett.
FEBLAL
0165
0014-5793
446
81
85
10.1016/S0014-5793(99)00191-X
Secondary structure of the C-terminal domain of the tyrosyl-transfer RNA synthetase from Bacillus stearothermophilus: a novel type of anticodon binding domain?
1999
10.2210/pdb1jh3/pdb
pdb_00001jh3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
12001.544
TYROSYL-TRNA SYNTHETASE
6.1.1.1
C-terminal domain (Residues 321-419)
1
man
polymer
no
no
ALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLE
GRFTVIRRGKKKYYLIRYALEHHHHHH
ALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLE
GRFTVIRRGKKKYYLIRYALEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Geobacillus
Escherichia
Escherichia coli
sample
tyrS
1422
Geobacillus stearothermophilus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET-20b(+)
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2002-03-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
2TS1 contains the structure of the N-terminal domain (1-319) of the same protein in complex with tyrosyl-adenylate.
RCSB
Y
PDBJ
2001-06-27
REL
REL
structures with the lowest energy
50
20
3D_15N-separated_NOESY
2D NOESY
HMQC-J
6.8
ambient
308
K
Structures were calculated using
1352 meaningful upper distance restraints,
71 dihedral angle restraints and 33 hydrogen bonds.
torsion angle dynamics simulated annealing
1
lowest energy
1.2mM protein, U-15N
20mM potassium phosphate, 90% H2O, 10% D2O
0.8mM protein, U-15N, U-13C
20mM potassium phosphate, 90% H2O, 10% D2O
1.0mM protein
20mM potassium phosphate, 100% D2O
Bartels, Xia, Billeter, Guntert
data analysis
XEASY
1.2
Guntert, Mumenthaler, Herrmann
structure solution
DYANA
1.5
Luginbuhl, Guntert, Billeter
refinement
OPAL
2.6
collection
VNMR
6.1b
500
Varian
INOVA
800
Bruker
DRX
ALA
1
n
1
ALA
1
A
LEU
2
n
2
LEU
2
A
PHE
3
n
3
PHE
3
A
SER
4
n
4
SER
4
A
GLY
5
n
5
GLY
5
A
ASP
6
n
6
ASP
6
A
ILE
7
n
7
ILE
7
A
ALA
8
n
8
ALA
8
A
ASN
9
n
9
ASN
9
A
LEU
10
n
10
LEU
10
A
THR
11
n
11
THR
11
A
ALA
12
n
12
ALA
12
A
ALA
13
n
13
ALA
13
A
GLU
14
n
14
GLU
14
A
ILE
15
n
15
ILE
15
A
GLU
16
n
16
GLU
16
A
GLN
17
n
17
GLN
17
A
GLY
18
n
18
GLY
18
A
PHE
19
n
19
PHE
19
A
LYS
20
n
20
LYS
20
A
ASP
21
n
21
ASP
21
A
VAL
22
n
22
VAL
22
A
PRO
23
n
23
PRO
23
A
SER
24
n
24
SER
24
A
PHE
25
n
25
PHE
25
A
VAL
26
n
26
VAL
26
A
HIS
27
n
27
HIS
27
A
GLU
28
n
28
GLU
28
A
GLY
29
n
29
GLY
29
A
GLY
30
n
30
GLY
30
A
ASP
31
n
31
ASP
31
A
VAL
32
n
32
VAL
32
A
PRO
33
n
33
PRO
33
A
LEU
34
n
34
LEU
34
A
VAL
35
n
35
VAL
35
A
GLU
36
n
36
GLU
36
A
LEU
37
n
37
LEU
37
A
LEU
38
n
38
LEU
38
A
VAL
39
n
39
VAL
39
A
SER
40
n
40
SER
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
ILE
43
n
43
ILE
43
A
SER
44
n
44
SER
44
A
PRO
45
n
45
PRO
45
A
SER
46
n
46
SER
46
A
LYS
47
n
47
LYS
47
A
ARG
48
n
48
ARG
48
A
GLN
49
n
49
GLN
49
A
ALA
50
n
50
ALA
50
A
ARG
51
n
51
ARG
51
A
GLU
52
n
52
GLU
52
A
ASP
53
n
53
ASP
53
A
ILE
54
n
54
ILE
54
A
GLN
55
n
55
GLN
55
A
ASN
56
n
56
ASN
56
A
GLY
57
n
57
GLY
57
A
ALA
58
n
58
ALA
58
A
ILE
59
n
59
ILE
59
A
TYR
60
n
60
TYR
60
A
VAL
61
n
61
VAL
61
A
ASN
62
n
62
ASN
62
A
GLY
63
n
63
GLY
63
A
GLU
64
n
64
GLU
64
A
ARG
65
n
65
ARG
65
A
LEU
66
n
66
LEU
66
A
GLN
67
n
67
GLN
67
A
ASP
68
n
68
ASP
68
A
VAL
69
n
69
VAL
69
A
GLY
70
n
70
GLY
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
LEU
73
n
73
LEU
73
A
THR
74
n
74
THR
74
A
ALA
75
n
75
ALA
75
A
GLU
76
n
76
GLU
76
A
HIS
77
n
77
HIS
77
A
ARG
78
n
78
ARG
78
A
LEU
79
n
79
LEU
79
A
GLU
80
n
80
GLU
80
A
GLY
81
n
81
GLY
81
A
ARG
82
n
82
ARG
82
A
PHE
83
n
83
PHE
83
A
THR
84
n
84
THR
84
A
VAL
85
n
85
VAL
85
A
ILE
86
n
86
ILE
86
A
ARG
87
n
87
ARG
87
A
ARG
88
n
88
ARG
88
A
GLY
89
n
89
GLY
89
A
LYS
90
n
90
LYS
90
A
LYS
91
n
91
LYS
91
A
LYS
92
n
92
LYS
92
A
TYR
93
n
93
TYR
93
A
TYR
94
n
94
TYR
94
A
LEU
95
n
95
LEU
95
A
ILE
96
n
96
ILE
96
A
ARG
97
n
97
ARG
97
A
TYR
98
n
98
TYR
98
A
ALA
99
n
99
ALA
99
A
n
100
100
A
n
101
101
A
n
102
102
A
n
103
103
A
n
104
104
A
n
105
105
A
n
106
106
A
n
107
107
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
25
A
N
PHE
25
A
O
LEU
95
A
O
LEU
95
A
N
ILE
96
A
N
ILE
96
A
O
THR
84
A
O
THR
84
A
N
ARG
87
A
N
ARG
87
A
O
TYR
60
A
O
TYR
60
A
O
VAL
61
A
O
VAL
61
A
N
GLU
64
A
N
GLU
64
1
A
LEU
100
A
LEU
100
1
Y
1
A
GLU
101
A
GLU
101
1
Y
1
A
HIS
102
A
HIS
102
1
Y
1
A
HIS
103
A
HIS
103
1
Y
1
A
HIS
104
A
HIS
104
1
Y
1
A
HIS
105
A
HIS
105
1
Y
1
A
HIS
106
A
HIS
106
1
Y
1
A
HIS
107
A
HIS
107
1
Y
2
A
LEU
100
A
LEU
100
1
Y
2
A
GLU
101
A
GLU
101
1
Y
2
A
HIS
102
A
HIS
102
1
Y
2
A
HIS
103
A
HIS
103
1
Y
2
A
HIS
104
A
HIS
104
1
Y
2
A
HIS
105
A
HIS
105
1
Y
2
A
HIS
106
A
HIS
106
1
Y
2
A
HIS
107
A
HIS
107
1
Y
3
A
LEU
100
A
LEU
100
1
Y
3
A
GLU
101
A
GLU
101
1
Y
3
A
HIS
102
A
HIS
102
1
Y
3
A
HIS
103
A
HIS
103
1
Y
3
A
HIS
104
A
HIS
104
1
Y
3
A
HIS
105
A
HIS
105
1
Y
3
A
HIS
106
A
HIS
106
1
Y
3
A
HIS
107
A
HIS
107
1
Y
4
A
LEU
100
A
LEU
100
1
Y
4
A
GLU
101
A
GLU
101
1
Y
4
A
HIS
102
A
HIS
102
1
Y
4
A
HIS
103
A
HIS
103
1
Y
4
A
HIS
104
A
HIS
104
1
Y
4
A
HIS
105
A
HIS
105
1
Y
4
A
HIS
106
A
HIS
106
1
Y
4
A
HIS
107
A
HIS
107
1
Y
5
A
LEU
100
A
LEU
100
1
Y
5
A
GLU
101
A
GLU
101
1
Y
5
A
HIS
102
A
HIS
102
1
Y
5
A
HIS
103
A
HIS
103
1
Y
5
A
HIS
104
A
HIS
104
1
Y
5
A
HIS
105
A
HIS
105
1
Y
5
A
HIS
106
A
HIS
106
1
Y
5
A
HIS
107
A
HIS
107
1
Y
6
A
LEU
100
A
LEU
100
1
Y
6
A
GLU
101
A
GLU
101
1
Y
6
A
HIS
102
A
HIS
102
1
Y
6
A
HIS
103
A
HIS
103
1
Y
6
A
HIS
104
A
HIS
104
1
Y
6
A
HIS
105
A
HIS
105
1
Y
6
A
HIS
106
A
HIS
106
1
Y
6
A
HIS
107
A
HIS
107
1
Y
7
A
LEU
100
A
LEU
100
1
Y
7
A
GLU
101
A
GLU
101
1
Y
7
A
HIS
102
A
HIS
102
1
Y
7
A
HIS
103
A
HIS
103
1
Y
7
A
HIS
104
A
HIS
104
1
Y
7
A
HIS
105
A
HIS
105
1
Y
7
A
HIS
106
A
HIS
106
1
Y
7
A
HIS
107
A
HIS
107
1
Y
8
A
LEU
100
A
LEU
100
1
Y
8
A
GLU
101
A
GLU
101
1
Y
8
A
HIS
102
A
HIS
102
1
Y
8
A
HIS
103
A
HIS
103
1
Y
8
A
HIS
104
A
HIS
104
1
Y
8
A
HIS
105
A
HIS
105
1
Y
8
A
HIS
106
A
HIS
106
1
Y
8
A
HIS
107
A
HIS
107
1
Y
9
A
LEU
100
A
LEU
100
1
Y
9
A
GLU
101
A
GLU
101
1
Y
9
A
HIS
102
A
HIS
102
1
Y
9
A
HIS
103
A
HIS
103
1
Y
9
A
HIS
104
A
HIS
104
1
Y
9
A
HIS
105
A
HIS
105
1
Y
9
A
HIS
106
A
HIS
106
1
Y
9
A
HIS
107
A
HIS
107
1
Y
10
A
LEU
100
A
LEU
100
1
Y
10
A
GLU
101
A
GLU
101
1
Y
10
A
HIS
102
A
HIS
102
1
Y
10
A
HIS
103
A
HIS
103
1
Y
10
A
HIS
104
A
HIS
104
1
Y
10
A
HIS
105
A
HIS
105
1
Y
10
A
HIS
106
A
HIS
106
1
Y
10
A
HIS
107
A
HIS
107
1
Y
11
A
LEU
100
A
LEU
100
1
Y
11
A
GLU
101
A
GLU
101
1
Y
11
A
HIS
102
A
HIS
102
1
Y
11
A
HIS
103
A
HIS
103
1
Y
11
A
HIS
104
A
HIS
104
1
Y
11
A
HIS
105
A
HIS
105
1
Y
11
A
HIS
106
A
HIS
106
1
Y
11
A
HIS
107
A
HIS
107
1
Y
12
A
LEU
100
A
LEU
100
1
Y
12
A
GLU
101
A
GLU
101
1
Y
12
A
HIS
102
A
HIS
102
1
Y
12
A
HIS
103
A
HIS
103
1
Y
12
A
HIS
104
A
HIS
104
1
Y
12
A
HIS
105
A
HIS
105
1
Y
12
A
HIS
106
A
HIS
106
1
Y
12
A
HIS
107
A
HIS
107
1
Y
13
A
LEU
100
A
LEU
100
1
Y
13
A
GLU
101
A
GLU
101
1
Y
13
A
HIS
102
A
HIS
102
1
Y
13
A
HIS
103
A
HIS
103
1
Y
13
A
HIS
104
A
HIS
104
1
Y
13
A
HIS
105
A
HIS
105
1
Y
13
A
HIS
106
A
HIS
106
1
Y
13
A
HIS
107
A
HIS
107
1
Y
14
A
LEU
100
A
LEU
100
1
Y
14
A
GLU
101
A
GLU
101
1
Y
14
A
HIS
102
A
HIS
102
1
Y
14
A
HIS
103
A
HIS
103
1
Y
14
A
HIS
104
A
HIS
104
1
Y
14
A
HIS
105
A
HIS
105
1
Y
14
A
HIS
106
A
HIS
106
1
Y
14
A
HIS
107
A
HIS
107
1
Y
15
A
LEU
100
A
LEU
100
1
Y
15
A
GLU
101
A
GLU
101
1
Y
15
A
HIS
102
A
HIS
102
1
Y
15
A
HIS
103
A
HIS
103
1
Y
15
A
HIS
104
A
HIS
104
1
Y
15
A
HIS
105
A
HIS
105
1
Y
15
A
HIS
106
A
HIS
106
1
Y
15
A
HIS
107
A
HIS
107
1
Y
16
A
LEU
100
A
LEU
100
1
Y
16
A
GLU
101
A
GLU
101
1
Y
16
A
HIS
102
A
HIS
102
1
Y
16
A
HIS
103
A
HIS
103
1
Y
16
A
HIS
104
A
HIS
104
1
Y
16
A
HIS
105
A
HIS
105
1
Y
16
A
HIS
106
A
HIS
106
1
Y
16
A
HIS
107
A
HIS
107
1
Y
17
A
LEU
100
A
LEU
100
1
Y
17
A
GLU
101
A
GLU
101
1
Y
17
A
HIS
102
A
HIS
102
1
Y
17
A
HIS
103
A
HIS
103
1
Y
17
A
HIS
104
A
HIS
104
1
Y
17
A
HIS
105
A
HIS
105
1
Y
17
A
HIS
106
A
HIS
106
1
Y
17
A
HIS
107
A
HIS
107
1
Y
18
A
LEU
100
A
LEU
100
1
Y
18
A
GLU
101
A
GLU
101
1
Y
18
A
HIS
102
A
HIS
102
1
Y
18
A
HIS
103
A
HIS
103
1
Y
18
A
HIS
104
A
HIS
104
1
Y
18
A
HIS
105
A
HIS
105
1
Y
18
A
HIS
106
A
HIS
106
1
Y
18
A
HIS
107
A
HIS
107
1
Y
19
A
LEU
100
A
LEU
100
1
Y
19
A
GLU
101
A
GLU
101
1
Y
19
A
HIS
102
A
HIS
102
1
Y
19
A
HIS
103
A
HIS
103
1
Y
19
A
HIS
104
A
HIS
104
1
Y
19
A
HIS
105
A
HIS
105
1
Y
19
A
HIS
106
A
HIS
106
1
Y
19
A
HIS
107
A
HIS
107
1
Y
20
A
LEU
100
A
LEU
100
1
Y
20
A
GLU
101
A
GLU
101
1
Y
20
A
HIS
102
A
HIS
102
1
Y
20
A
HIS
103
A
HIS
103
1
Y
20
A
HIS
104
A
HIS
104
1
Y
20
A
HIS
105
A
HIS
105
1
Y
20
A
HIS
106
A
HIS
106
1
Y
20
A
HIS
107
A
HIS
107
1
Y
2
A
A
HG
OD2
SER
ASP
44
53
1.55
4
A
A
HG
OD2
SER
ASP
44
53
1.56
5
A
A
HG1
OE1
THR
GLU
11
14
1.58
9
A
A
HG
OD2
SER
ASP
44
53
1.58
10
A
A
HG
OD2
SER
ASP
44
53
1.58
11
A
A
HG
OD2
SER
ASP
44
53
1.50
11
A
A
HG
OE1
SER
GLU
4
80
1.52
12
A
A
HG
OD2
SER
ASP
44
53
1.55
15
A
A
HG1
OE2
THR
GLU
74
76
1.56
17
A
A
HG
OD2
SER
ASP
44
53
1.59
18
A
A
HG
OD2
SER
ASP
44
53
1.55
20
A
A
HG
OD2
SER
ASP
44
53
1.56
20
A
A
HG1
OE1
THR
GLU
11
14
1.58
1
A
HIS
77
0.097
SIDE CHAIN
1
A
TYR
98
0.116
SIDE CHAIN
2
A
HIS
77
0.095
SIDE CHAIN
2
A
ARG
78
0.136
SIDE CHAIN
2
A
PHE
83
0.080
SIDE CHAIN
2
A
TYR
94
0.086
SIDE CHAIN
3
A
ARG
48
0.110
SIDE CHAIN
3
A
HIS
77
0.094
SIDE CHAIN
3
A
ARG
88
0.085
SIDE CHAIN
3
A
TYR
98
0.146
SIDE CHAIN
5
A
TYR
94
0.100
SIDE CHAIN
5
A
TYR
98
0.200
SIDE CHAIN
6
A
HIS
77
0.100
SIDE CHAIN
7
A
TYR
60
0.091
SIDE CHAIN
7
A
HIS
77
0.105
SIDE CHAIN
7
A
ARG
88
0.098
SIDE CHAIN
7
A
TYR
94
0.068
SIDE CHAIN
8
A
HIS
77
0.098
SIDE CHAIN
8
A
TYR
93
0.084
SIDE CHAIN
9
A
PHE
19
0.075
SIDE CHAIN
9
A
HIS
77
0.099
SIDE CHAIN
9
A
ARG
78
0.086
SIDE CHAIN
9
A
ARG
82
0.088
SIDE CHAIN
9
A
TYR
94
0.068
SIDE CHAIN
9
A
ARG
97
0.083
SIDE CHAIN
10
A
HIS
77
0.098
SIDE CHAIN
11
A
ARG
78
0.099
SIDE CHAIN
11
A
TYR
93
0.072
SIDE CHAIN
11
A
TYR
98
0.085
SIDE CHAIN
12
A
PHE
19
0.084
SIDE CHAIN
12
A
ARG
87
0.076
SIDE CHAIN
13
A
ARG
48
0.078
SIDE CHAIN
13
A
ARG
65
0.090
SIDE CHAIN
13
A
TYR
94
0.089
SIDE CHAIN
14
A
HIS
77
0.098
SIDE CHAIN
14
A
ARG
88
0.095
SIDE CHAIN
14
A
TYR
98
0.068
SIDE CHAIN
15
A
HIS
77
0.095
SIDE CHAIN
15
A
ARG
78
0.121
SIDE CHAIN
15
A
TYR
98
0.084
SIDE CHAIN
16
A
ARG
51
0.116
SIDE CHAIN
16
A
ARG
88
0.087
SIDE CHAIN
17
A
HIS
77
0.107
SIDE CHAIN
17
A
ARG
78
0.127
SIDE CHAIN
17
A
ARG
88
0.112
SIDE CHAIN
17
A
TYR
94
0.079
SIDE CHAIN
17
A
TYR
98
0.081
SIDE CHAIN
20
A
HIS
77
0.117
SIDE CHAIN
20
A
ARG
88
0.118
SIDE CHAIN
3
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
88
88
88
N
4
-3.68
0.60
121.00
117.32
A
A
A
CB
CG
CD1
TYR
TYR
TYR
94
94
94
N
5
-3.18
0.50
120.30
117.12
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
82
82
82
N
6
13.40
2.00
111.60
125.00
A
A
A
CB
CA
C
ILE
ILE
ILE
59
59
59
N
7
12.20
1.90
111.00
123.20
A
A
A
CA
CB
CG1
ILE
ILE
ILE
59
59
59
N
7
13.94
2.20
113.40
127.34
A
A
A
CA
CB
CG
GLN
GLN
GLN
67
67
67
N
7
-3.97
0.60
121.00
117.03
A
A
A
CB
CG
CD2
TYR
TYR
TYR
94
94
94
N
8
12.03
2.00
111.60
123.63
A
A
A
CB
CA
C
ILE
ILE
ILE
59
59
59
N
8
12.64
1.40
123.60
136.24
A
A
A
CD
NE
CZ
ARG
ARG
ARG
88
88
88
N
9
10.87
1.40
123.60
134.47
A
A
A
CD
NE
CZ
ARG
ARG
ARG
88
88
88
N
10
-3.25
0.50
120.30
117.05
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
51
51
51
N
10
12.36
2.00
111.60
123.96
A
A
A
CB
CA
C
ILE
ILE
ILE
59
59
59
N
11
13.67
2.00
111.60
125.27
A
A
A
CB
CA
C
ILE
ILE
ILE
59
59
59
N
11
9.07
1.50
110.90
119.97
A
A
A
CA
CB
CG1
VAL
VAL
VAL
85
85
85
N
12
4.09
0.50
120.30
124.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
88
88
88
N
12
-4.09
0.60
121.00
116.91
A
A
A
CB
CG
CD2
TYR
TYR
TYR
93
93
93
N
13
12.76
2.00
111.60
124.36
A
A
A
CB
CA
C
ILE
ILE
ILE
59
59
59
N
16
9.64
1.50
110.90
120.54
A
A
A
CA
CB
CG1
VAL
VAL
VAL
39
39
39
N
17
-3.43
0.50
120.30
116.87
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
65
65
65
N
17
3.07
0.50
120.30
123.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
88
88
88
N
18
3.87
0.50
120.30
124.17
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
88
88
88
N
19
-4.72
0.60
121.00
116.28
A
A
A
CB
CG
CD2
TYR
TYR
TYR
93
93
93
N
1
A
LYS
20
-55.06
9.08
1
A
ARG
65
-55.46
109.00
1
A
LEU
73
-112.38
-93.11
1
A
ARG
82
-129.12
-82.83
1
A
PHE
83
-119.55
-165.62
1
A
LYS
91
-135.91
-97.55
1
A
LYS
92
-159.17
-159.89
1
A
TYR
93
-110.23
75.90
2
A
LEU
2
-121.83
-61.78
2
A
SER
4
-73.96
-165.41
2
A
LYS
20
-56.18
7.19
2
A
ASN
62
64.23
-6.63
2
A
ARG
65
-59.89
108.56
2
A
LEU
73
-113.86
-97.30
2
A
GLU
80
-53.61
-6.21
2
A
ARG
82
-138.20
-63.61
2
A
LYS
91
-148.59
-156.05
2
A
LYS
92
-97.68
-150.75
3
A
SER
4
58.69
-1.75
3
A
ILE
7
-38.80
63.14
3
A
LYS
20
-55.55
-9.57
3
A
ARG
65
-52.44
106.84
3
A
LEU
73
-109.61
-93.14
3
A
ARG
78
-114.44
-79.58
3
A
GLU
80
-55.01
0.05
3
A
ARG
82
-104.58
-65.92
3
A
LYS
90
137.53
-50.66
3
A
LYS
91
-113.00
-110.51
3
A
LYS
92
-148.04
-154.78
3
A
TYR
93
-115.00
78.85
4
A
SER
4
52.12
-153.94
4
A
ILE
7
-90.57
54.59
4
A
LEU
10
-151.91
68.01
4
A
LYS
20
-57.96
-9.01
4
A
LEU
73
-114.76
-95.20
4
A
ARG
82
-141.17
-49.17
4
A
ARG
87
-100.48
79.47
4
A
LYS
91
-142.27
-78.06
4
A
LYS
92
-159.36
-152.63
4
A
TYR
93
-100.98
75.12
5
A
LEU
2
-148.17
-52.31
5
A
PHE
3
-58.52
98.42
5
A
SER
4
-150.68
54.36
5
A
ILE
7
-91.17
41.90
5
A
LYS
20
-59.16
-5.55
5
A
ASN
62
67.24
-14.06
5
A
GLN
67
-94.19
35.09
5
A
LEU
73
-106.97
-75.18
5
A
THR
74
-131.06
-142.21
5
A
ARG
78
-126.80
-71.90
5
A
GLU
80
-59.01
-3.62
5
A
ARG
82
-133.77
-59.25
5
A
LYS
91
-144.15
-131.52
5
A
LYS
92
-128.27
-159.73
6
A
ILE
7
-67.48
82.92
6
A
HIS
27
-117.49
-168.13
6
A
LEU
73
-107.26
-95.24
6
A
ARG
78
-128.27
-61.34
6
A
ARG
82
-141.74
-46.10
6
A
LYS
92
-83.72
-146.07
7
A
LEU
2
55.45
-175.21
7
A
PHE
3
-157.94
-46.99
7
A
ILE
7
-90.93
51.24
7
A
LEU
10
-158.76
84.52
7
A
GLU
28
-100.08
57.74
7
A
GLN
67
-78.97
31.94
7
A
LEU
73
-108.12
-87.02
7
A
ARG
78
-114.21
-77.15
7
A
ARG
82
-133.27
-81.30
7
A
PHE
83
-127.36
-166.39
7
A
LYS
91
-131.76
-90.44
7
A
LYS
92
-152.82
-152.39
8
A
ILE
7
-62.48
40.26
8
A
GLU
28
-79.19
33.08
8
A
ASN
62
76.34
-52.39
8
A
LEU
73
-108.27
-86.41
8
A
THR
74
-115.57
-168.94
8
A
ARG
78
-130.45
-62.97
8
A
ARG
82
-139.04
-79.23
8
A
LYS
90
-69.39
15.19
8
A
LYS
91
-162.69
-82.96
8
A
TYR
93
-107.03
76.83
9
A
LEU
2
39.98
-5.72
9
A
ASP
6
-78.63
-72.71
9
A
ILE
7
-91.06
52.46
9
A
ALA
8
-68.32
4.21
9
A
LEU
10
-152.96
70.25
9
A
GLU
28
-80.92
37.98
9
A
SER
44
-160.74
111.32
9
A
ARG
65
-53.99
100.39
9
A
LEU
73
-115.84
-98.57
9
A
ARG
78
-96.20
-74.89
9
A
GLU
80
-23.24
-52.18
9
A
ARG
82
-135.90
-88.03
9
A
LYS
91
-149.76
-89.91
9
A
LYS
92
-151.94
-144.52
10
A
PHE
3
-138.83
-97.10
10
A
SER
4
-156.99
-112.47
10
A
ILE
7
-91.58
53.39
10
A
LEU
10
-155.00
72.93
10
A
ILE
54
-96.15
-67.74
10
A
ARG
65
-51.71
105.78
10
A
GLN
67
-78.43
39.89
10
A
LEU
73
-112.13
-91.17
10
A
ARG
78
-125.79
-63.67
10
A
ARG
82
-145.01
-60.88
10
A
LYS
90
132.19
113.80
10
A
LYS
91
54.43
-127.61
10
A
LYS
92
-139.30
-143.55
11
A
SER
4
-46.74
104.65
11
A
LYS
20
-48.18
-12.88
11
A
HIS
27
-119.90
-168.33
11
A
ASN
62
54.86
15.21
11
A
ARG
65
-53.21
109.10
11
A
ALA
71
-91.39
-60.63
11
A
LEU
73
-110.36
-96.62
11
A
ARG
78
-115.76
-86.72
11
A
GLU
80
-51.60
1.52
11
A
ARG
82
-135.26
-65.31
11
A
LYS
90
63.59
-56.79
11
A
LYS
91
-84.16
-94.41
12
A
LEU
2
-148.36
-149.44
12
A
SER
4
55.08
-177.19
12
A
ILE
7
-53.88
93.32
12
A
SER
44
-160.58
110.77
12
A
ARG
65
-50.37
102.29
12
A
LEU
73
-124.17
-94.90
12
A
ARG
78
-103.29
-66.60
12
A
ARG
82
-139.52
-81.74
12
A
PHE
83
-128.36
-162.63
12
A
LYS
91
-111.60
-117.63
12
A
LYS
92
-147.13
-151.35
13
A
ILE
7
-54.46
87.93
13
A
LYS
20
-59.82
0.32
13
A
SER
44
-160.37
105.83
13
A
LEU
73
-111.15
-94.27
13
A
ARG
82
-139.07
-64.44
13
A
LYS
91
-132.42
-100.61
14
A
ASP
6
-85.54
-95.22
14
A
LYS
20
-53.81
-8.18
14
A
GLU
28
-79.01
32.15
14
A
ASN
62
59.75
19.78
14
A
ARG
65
-58.18
106.16
14
A
LEU
73
-110.15
-93.83
14
A
ARG
78
-119.97
-70.25
14
A
GLU
80
-57.80
-7.17
14
A
ARG
82
-136.97
-66.02
14
A
LYS
91
-85.00
-111.63
14
A
LYS
92
-159.38
-157.22
14
A
TYR
93
-106.50
65.05
15
A
PHE
3
-76.05
-74.37
15
A
SER
4
55.75
178.87
15
A
ILE
7
-90.96
30.44
15
A
LEU
10
-151.43
78.59
15
A
GLU
28
-79.46
37.14
15
A
ARG
65
-56.27
109.75
15
A
LEU
73
-108.05
-95.06
15
A
ARG
78
-105.42
-65.12
15
A
ARG
82
-141.28
-67.03
15
A
PHE
83
-128.27
-168.11
15
A
LYS
90
71.98
-48.29
15
A
LYS
91
-88.58
-153.65
15
A
LYS
92
-120.53
-158.13
16
A
ILE
7
-66.44
90.82
16
A
LYS
20
-58.82
15.34
16
A
ASN
62
75.81
-54.43
16
A
ARG
65
-58.32
106.80
16
A
LEU
73
-116.41
-92.64
16
A
ARG
78
-117.20
-71.42
16
A
GLU
80
-53.00
-9.88
16
A
ARG
82
-141.35
-64.85
16
A
LYS
91
-146.92
-95.86
16
A
TYR
93
-107.41
75.64
17
A
ILE
7
-54.20
64.42
17
A
LYS
20
-58.73
-0.33
17
A
ASN
62
57.37
18.09
17
A
LEU
73
-124.15
-91.32
17
A
ARG
78
-120.34
-65.17
17
A
ARG
82
-143.62
-63.58
17
A
LYS
91
-125.43
-90.27
17
A
LYS
92
-154.31
-159.88
18
A
LEU
2
-64.04
93.53
18
A
PHE
3
-161.21
-162.72
18
A
SER
4
60.65
71.57
18
A
ASP
6
-78.29
-79.86
18
A
LEU
10
-159.67
80.22
18
A
LYS
20
-59.02
-0.53
18
A
GLU
28
-89.78
39.43
18
A
ASN
62
61.11
-16.88
18
A
LEU
73
-122.26
-70.50
18
A
ARG
78
-116.53
-79.10
18
A
GLU
80
-48.99
-11.70
18
A
ARG
82
-137.94
-81.56
18
A
PHE
83
-127.94
-162.19
18
A
LYS
91
-103.95
-98.67
19
A
LEU
2
-70.03
-78.00
19
A
ILE
7
-91.62
49.57
19
A
LEU
10
-154.08
78.15
19
A
LYS
20
-56.62
5.37
19
A
ALA
71
-91.81
-61.82
19
A
LEU
73
-99.60
-89.78
19
A
THR
74
-112.57
-168.80
19
A
ARG
78
-105.96
-82.09
19
A
GLU
80
-25.65
-51.12
19
A
ARG
82
-140.82
-82.80
19
A
LYS
91
-135.96
-75.15
20
A
PHE
3
-144.71
-47.60
20
A
ILE
7
-61.92
72.11
20
A
LYS
20
-59.14
17.82
20
A
GLN
67
-97.02
46.60
20
A
LEU
73
-110.47
-88.02
20
A
ARG
78
-110.70
-75.07
20
A
ARG
82
-143.02
-45.63
20
A
LYS
90
69.08
-0.31
20
A
LYS
91
-117.47
-104.88
Solution structure of tyrosyl-tRNA synthetase C-terminal domain.
1
N
N
A
THR
11
A
THR
11
HELX_P
A
LYS
20
A
LYS
20
1
1
10
A
PRO
33
A
PRO
33
HELX_P
A
GLY
42
A
GLY
42
1
2
10
A
SER
46
A
SER
46
HELX_P
A
ASN
56
A
ASN
56
1
3
11
LIGASE
aminoacyl-tRNA synthetase, anticodon-arm binding domain, LIGASE
SYY_BACST
UNP
1
P00952
321
419
1JH3
1
99
P00952
A
1
1
99
1
expression tag
LEU
100
1JH3
A
P00952
UNP
100
1
expression tag
GLU
101
1JH3
A
P00952
UNP
101
1
expression tag
HIS
102
1JH3
A
P00952
UNP
102
1
expression tag
HIS
103
1JH3
A
P00952
UNP
103
1
expression tag
HIS
104
1JH3
A
P00952
UNP
104
1
expression tag
HIS
105
1JH3
A
P00952
UNP
105
1
expression tag
HIS
106
1JH3
A
P00952
UNP
106
1
expression tag
HIS
107
1JH3
A
P00952
UNP
107
5
parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
24
A
SER
24
A
HIS
27
A
HIS
27
A
TYR
93
A
TYR
93
A
TYR
98
A
TYR
98
A
PHE
83
A
PHE
83
A
ARG
88
A
ARG
88
A
ILE
59
A
ILE
59
A
VAL
61
A
VAL
61
A
GLU
64
A
GLU
64
A
ARG
65
A
ARG
65