0.009887 0.005708 0.000000 0.000000 0.011417 0.000000 0.000000 0.000000 0.011111 0.00000 0.00000 0.00000 Hofmann, A. Grella, M. Botos, I. Filipowicz, W. Wlodawer, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 101.140 101.140 90.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H12 N2 O9 V 343.141 URIDINE-2',3'-VANADATE non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N N N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N N N 209 S C N 210 N C N 211 N O N 212 N C N 213 N C N 214 N S N 215 N C N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 S C N 230 N C N 231 N O N 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C Y 237 N C Y 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N S N 283 N O N 284 N O N 285 N O N 286 N O N 287 N N N 288 S C N 289 N C N 290 N O N 291 R C N 292 N O N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N N Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C N 342 N O N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 N C N 357 N N N 358 N C N 359 N C N 360 N C N 361 N O N 362 N O N 363 R C N 364 R C N 365 N O N 366 R C N 367 R C N 368 N O N 369 N O N 370 N C N 371 N O N 372 N V N 373 N O N 374 N O N 375 N O N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C N 393 N C N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing Y 227 N doub Y 228 N sing Y 229 N sing N 230 N sing Y 231 N doub N 232 N sing Y 233 N doub N 234 N sing Y 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing Y 300 N doub Y 301 N sing Y 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N sing Y 309 N doub N 310 N sing Y 311 N doub N 312 N sing Y 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N doub N 333 N sing Y 334 N doub N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 277 1419 1425 10.1074/jbc.M107889200 11694509 Crystal structures of the semireduced and inhibitor-bound forms of cyclic nucleotide phosphodiesterase from Arabidopsis thaliana. 2002 10.2210/pdb1jh7/pdb pdb_00001jh7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-03-11 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.070 1.0 X9B NSLS 1.070 SYNCHROTRON NSLS BEAMLINE X9B 21510.268 cyclic phosphodiesterase 3.1.4.- 1 man polymer 96.063 SULFATE ION 4 syn non-polymer 343.141 URIDINE-2',3'-VANADATE 2 syn non-polymer 18.015 water 94 nat water no no MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVSTG TFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCK TDTEDKTLETWETVAVCNLNPGSHHHHHH MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVSTG TFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCK TDTEDKTLETWETVAVCNLNPGSHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n thale cress Arabidopsis Escherichia Escherichia coli sample 3702 Arabidopsis thaliana 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET11d+ 1 2.1 41.7 VAPOR DIFFUSION, HANGING DROP 5.0 (NH4)2SO4, NaOAc, DTT, 2',3'-cyclic uridine vanadate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 285K 285 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_special_symmetry struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-02-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id oxidised cyclic nucleotide phosphodiesterase from Arabidopsis thaliana semi-reduced cyclic nucleotide phosphodiesterase from Arabidopsis thaliana RCSB Y RCSB 2001-06-27 REL REL SO4 SULFATE ION UVC URIDINE-2',3'-VANADATE HOH water semi-reduced CPDase (A. thaliana) [delta 90-115] Other experimental model SO4 212 2 SO4 SO4 212 A SO4 213 2 SO4 SO4 213 A SO4 214 2 SO4 SO4 214 A SO4 215 2 SO4 SO4 215 A UVD 201 3 UVC UVC 201 A UVD 202 3 UVC UVC 202 A TIP 301 4 HOH HOH 301 A TIP 302 4 HOH HOH 302 A TIP 303 4 HOH HOH 303 A TIP 304 4 HOH HOH 304 A TIP 305 4 HOH HOH 305 A TIP 306 4 HOH HOH 306 A TIP 307 4 HOH HOH 307 A TIP 308 4 HOH HOH 308 A TIP 309 4 HOH HOH 309 A TIP 310 4 HOH HOH 310 A TIP 311 4 HOH HOH 311 A TIP 312 4 HOH HOH 312 A TIP 313 4 HOH HOH 313 A TIP 314 4 HOH HOH 314 A TIP 315 4 HOH HOH 315 A TIP 316 4 HOH HOH 316 A TIP 317 4 HOH HOH 317 A TIP 318 4 HOH HOH 318 A TIP 319 4 HOH HOH 319 A TIP 320 4 HOH HOH 320 A TIP 321 4 HOH HOH 321 A TIP 322 4 HOH HOH 322 A TIP 323 4 HOH HOH 323 A TIP 324 4 HOH HOH 324 A TIP 325 4 HOH HOH 325 A TIP 326 4 HOH HOH 326 A TIP 327 4 HOH HOH 327 A TIP 328 4 HOH HOH 328 A TIP 329 4 HOH HOH 329 A TIP 330 4 HOH HOH 330 A TIP 331 4 HOH HOH 331 A TIP 332 4 HOH HOH 332 A TIP 333 4 HOH HOH 333 A TIP 334 4 HOH HOH 334 A TIP 335 4 HOH HOH 335 A TIP 336 4 HOH HOH 336 A TIP 337 4 HOH HOH 337 A TIP 338 4 HOH HOH 338 A TIP 339 4 HOH HOH 339 A TIP 340 4 HOH HOH 340 A TIP 341 4 HOH HOH 341 A TIP 342 4 HOH HOH 342 A TIP 343 4 HOH HOH 343 A TIP 344 4 HOH HOH 344 A TIP 345 4 HOH HOH 345 A TIP 346 4 HOH HOH 346 A TIP 347 4 HOH HOH 347 A TIP 348 4 HOH HOH 348 A TIP 349 4 HOH HOH 349 A TIP 350 4 HOH HOH 350 A TIP 351 4 HOH HOH 351 A TIP 352 4 HOH HOH 352 A TIP 353 4 HOH HOH 353 A TIP 354 4 HOH HOH 354 A TIP 355 4 HOH HOH 355 A TIP 356 4 HOH HOH 356 A TIP 357 4 HOH HOH 357 A TIP 358 4 HOH HOH 358 A TIP 359 4 HOH HOH 359 A TIP 360 4 HOH HOH 360 A TIP 361 4 HOH HOH 361 A TIP 362 4 HOH HOH 362 A TIP 363 4 HOH HOH 363 A TIP 364 4 HOH HOH 364 A TIP 365 4 HOH HOH 365 A TIP 366 4 HOH HOH 366 A TIP 367 4 HOH HOH 367 A TIP 368 4 HOH HOH 368 A TIP 369 4 HOH HOH 369 A TIP 370 4 HOH HOH 370 A TIP 371 4 HOH HOH 371 A TIP 372 4 HOH HOH 372 A TIP 373 4 HOH HOH 373 A TIP 374 4 HOH HOH 374 A TIP 375 4 HOH HOH 375 A TIP 376 4 HOH HOH 376 A TIP 377 4 HOH HOH 377 A TIP 378 4 HOH HOH 378 A TIP 379 4 HOH HOH 379 A TIP 380 4 HOH HOH 380 A TIP 381 4 HOH HOH 381 A TIP 382 4 HOH HOH 382 A TIP 383 4 HOH HOH 383 A TIP 384 4 HOH HOH 384 A TIP 385 4 HOH HOH 385 A TIP 386 4 HOH HOH 386 A TIP 387 4 HOH HOH 387 A TIP 388 4 HOH HOH 388 A TIP 389 4 HOH HOH 389 A TIP 390 4 HOH HOH 390 A TIP 391 4 HOH HOH 391 A TIP 392 4 HOH HOH 392 A TIP 393 4 HOH HOH 393 A TIP 394 4 HOH HOH 394 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A GLU 3 n 3 GLU 3 A VAL 4 n 4 VAL 4 A LYS 5 n 5 LYS 5 A LYS 6 n 6 LYS 6 A ASP 7 n 7 ASP 7 A VAL 8 n 8 VAL 8 A TYR 9 n 9 TYR 9 A SER 10 n 10 SER 10 A VAL 11 n 11 VAL 11 A TRP 12 n 12 TRP 12 A ALA 13 n 13 ALA 13 A LEU 14 n 14 LEU 14 A PRO 15 n 15 PRO 15 A ASP 16 n 16 ASP 16 A GLU 17 n 17 GLU 17 A GLU 18 n 18 GLU 18 A SER 19 n 19 SER 19 A GLU 20 n 20 GLU 20 A PRO 21 n 21 PRO 21 A ARG 22 n 22 ARG 22 A PHE 23 n 23 PHE 23 A LYS 24 n 24 LYS 24 A LYS 25 n 25 LYS 25 A LEU 26 n 26 LEU 26 A MET 27 n 27 MET 27 A GLU 28 n 28 GLU 28 A ALA 29 n 29 ALA 29 A LEU 30 n 30 LEU 30 A ARG 31 n 31 ARG 31 A SER 32 n 32 SER 32 A GLU 33 n 33 GLU 33 A PHE 34 n 34 PHE 34 A THR 35 n 35 THR 35 A GLY 36 n 36 GLY 36 A PRO 37 n 37 PRO 37 A ARG 38 n 38 ARG 38 A PHE 39 n 39 PHE 39 A VAL 40 n 40 VAL 40 A PRO 41 n 41 PRO 41 A HIS 42 n 42 HIS 42 A VAL 43 n 43 VAL 43 A THR 44 n 44 THR 44 A VAL 45 n 45 VAL 45 A ALA 46 n 46 ALA 46 A VAL 47 n 47 VAL 47 A SER 48 n 48 SER 48 A ALA 49 n 49 ALA 49 A TYR 50 n 50 TYR 50 A LEU 51 n 51 LEU 51 A THR 52 n 52 THR 52 A ALA 53 n 53 ALA 53 A ASP 54 n 54 ASP 54 A GLU 55 n 55 GLU 55 A ALA 56 n 56 ALA 56 A LYS 57 n 57 LYS 57 A LYS 58 n 58 LYS 58 A MET 59 n 59 MET 59 A PHE 60 n 60 PHE 60 A GLU 61 n 61 GLU 61 A SER 62 n 62 SER 62 A ALA 63 n 63 ALA 63 A CYS 64 n 64 CYS 64 A ASP 65 n 65 ASP 65 A GLY 66 n 66 GLY 66 A LEU 67 n 67 LEU 67 A LYS 68 n 68 LYS 68 A ALA 69 n 69 ALA 69 A TYR 70 n 70 TYR 70 A THR 71 n 71 THR 71 A ALA 72 n 72 ALA 72 A THR 73 n 73 THR 73 A VAL 74 n 74 VAL 74 A ASP 75 n 75 ASP 75 A ARG 76 n 76 ARG 76 A VAL 77 n 77 VAL 77 A SER 78 n 78 SER 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A THR 81 n 81 THR 81 A PHE 82 n 82 PHE 82 A PHE 83 n 83 PHE 83 A PHE 84 n 84 PHE 84 A GLN 85 n 85 GLN 85 A CYS 86 n 86 CYS 86 A VAL 87 n 87 VAL 87 A PHE 88 n 88 PHE 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A LEU 91 n 91 LEU 91 A GLN 92 n 92 GLN 92 A THR 93 n 93 THR 93 A THR 94 n 94 THR 94 A PRO 95 n 95 PRO 95 A GLU 96 n 96 GLU 96 A VAL 97 n 97 VAL 97 A MET 98 n 98 MET 98 A GLU 99 n 99 GLU 99 A ALA 100 n 100 ALA 100 A GLY 101 n 101 GLY 101 A GLU 102 n 102 GLU 102 A HIS 103 n 103 HIS 103 A CYS 104 n 104 CYS 104 A LYS 105 n 105 LYS 105 A ALA 106 n 106 ASN 106 A HIS 107 n 107 HIS 107 A ALA 108 n 108 PHE 108 A ASN 109 n 109 ASN 109 A CYS 110 n 110 CYS 110 A SER 111 n 111 SER 111 A THR 112 n 112 THR 112 A THR 113 n 113 THR 113 A THR 114 n 114 THR 114 A PRO 115 n 115 PRO 115 A TYR 116 n 116 TYR 116 A MET 117 n 117 MET 117 A PRO 118 n 118 PRO 118 A HIS 119 n 119 HIS 119 A LEU 120 n 120 LEU 120 A SER 121 n 121 SER 121 A LEU 122 n 122 LEU 122 A LEU 123 n 123 LEU 123 A TYR 124 n 124 TYR 124 A ALA 125 n 125 ALA 125 A GLU 126 n 126 GLU 126 A LEU 127 n 127 LEU 127 A THR 128 n 128 THR 128 A GLU 129 n 129 GLU 129 A GLU 130 n 130 GLU 130 A GLU 131 n 131 GLU 131 A LYS 132 n 132 LYS 132 A LYS 133 n 133 LYS 133 A ASN 134 n 134 ASN 134 A ALA 135 n 135 ALA 135 A GLN 136 n 136 GLN 136 A GLU 137 n 137 GLU 137 A LYS 138 n 138 LYS 138 A ALA 139 n 139 ALA 139 A TYR 140 n 140 TYR 140 A THR 141 n 141 THR 141 A LEU 142 n 142 LEU 142 A ASP 143 n 143 ASP 143 A SER 144 n 144 SER 144 A SER 145 n 145 SER 145 A LEU 146 n 146 LEU 146 A ASP 147 n 147 ASP 147 A GLY 148 n 148 GLY 148 A LEU 149 n 149 LEU 149 A SER 150 n 150 SER 150 A PHE 151 n 151 PHE 151 A ARG 152 n 152 ARG 152 A LEU 153 n 153 LEU 153 A ASN 154 n 154 ASN 154 A ARG 155 n 155 ARG 155 A LEU 156 n 156 LEU 156 A ALA 157 n 157 ALA 157 A LEU 158 n 158 LEU 158 A CYS 159 n 159 CYS 159 A LYS 160 n 160 LYS 160 A THR 161 n 161 THR 161 A ASP 162 n 162 ASP 162 A THR 163 n 163 THR 163 A GLU 164 n 164 GLU 164 A ASP 165 n 165 ASP 165 A LYS 166 n 166 LYS 166 A THR 167 n 167 THR 167 A LEU 168 n 168 LEU 168 A GLU 169 n 169 GLU 169 A THR 170 n 170 THR 170 A TRP 171 n 171 TRP 171 A GLU 172 n 172 GLU 172 A THR 173 n 173 THR 173 A VAL 174 n 174 VAL 174 A ALA 175 n 175 ALA 175 A VAL 176 n 176 VAL 176 A CYS 177 n 177 CYS 177 A ASN 178 n 178 ASN 178 A LEU 179 n 179 LEU 179 A ASN 180 n 180 ASN 180 A PRO 181 n 181 PRO 181 A GLY 182 n 182 GLY 182 A SER 183 n 183 SER 183 A HIS 184 n 184 HIS 184 A HIS 185 n 185 HIS 185 A n 186 186 A n 187 187 A n 188 188 A n 189 189 A author_defined_assembly 1 monomeric software_defined_assembly PISA 6 hexameric software_defined_assembly PQS 2 dimeric 24670 -385 46230 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 101.1400000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 50.5700000000 87.5898093388 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 16_545 y+1/3,x-1/3,-z+2/3 crystal symmetry operation 50.5700000000 -29.1966031129 60.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 17_555 x-y+1/3,-y+2/3,-z+2/3 crystal symmetry operation 0.0000000000 58.3932062258 60.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 18_655 -x+4/3,-x+y+2/3,-z+2/3 crystal symmetry operation 101.1400000000 58.3932062258 60.0000000000 A N LEU 51 A N LEU 51 A O ASP 7 A O ASP 7 A N LEU 14 A N LEU 14 A O ARG 155 A O ARG 155 A N LYS 160 A N LYS 160 A O GLU 172 A O GLU 172 A O ALA 72 A O ALA 72 A N PHE 151 A N PHE 151 A O PHE 82 A O PHE 82 A N GLN 85 A N GLN 85 A N LEU 89 A N LEU 89 A O LEU 120 A O LEU 120 1 A SO4 213 C SO4 1 A SO4 214 D SO4 1 A SO4 214 D SO4 1 A SO4 215 E SO4 1 A SO4 215 E SO4 1 A HOH 377 H HOH 1 A HOH 392 H HOH 1 A HOH 393 H HOH 1 A HOH 394 H HOH 1 A CG ASN 106 A CG ASN 106 1 Y 1 A OD1 ASN 106 A OD1 ASN 106 1 Y 1 A ND2 ASN 106 A ND2 ASN 106 1 Y 1 A CG PHE 108 A CG PHE 108 1 Y 1 A CD1 PHE 108 A CD1 PHE 108 1 Y 1 A CD2 PHE 108 A CD2 PHE 108 1 Y 1 A CE1 PHE 108 A CE1 PHE 108 1 Y 1 A CE2 PHE 108 A CE2 PHE 108 1 Y 1 A CZ PHE 108 A CZ PHE 108 1 Y 1 A HIS 186 A HIS 186 1 Y 1 A HIS 187 A HIS 187 1 Y 1 A HIS 188 A HIS 188 1 Y 1 A HIS 189 A HIS 189 1 Y 1 A A C N CYS SER 110 111 1.19 1 16.82 2.20 117.20 134.02 A A A CA C N PHE PHE ASN 108 108 109 Y 1 -19.79 1.60 122.70 102.91 A A A O C N PHE PHE ASN 108 108 109 Y 1 12.02 1.90 110.10 122.12 A A A CB CA C SER SER SER 111 111 111 N 1 -15.55 2.20 117.20 101.65 A A A CA C N SER SER THR 111 111 112 Y 1 18.33 1.60 122.70 141.03 A A A O C N SER SER THR 111 111 112 Y 1 A A C N CYS SER 110 111 -0.147 0.023 1.336 1.189 Y 1 A A CZ OG1 ARG THR 76 112 2.09 1_555 14_654 1 A PRO 15 -86.33 -155.14 1 A GLU 17 -70.70 25.02 1 A GLU 18 -141.20 -16.63 1 A SER 19 -94.73 -61.71 1 A GLU 20 -28.60 -53.79 1 A LYS 24 -36.95 -36.26 1 A GLU 33 -59.11 -70.61 1 A THR 35 -141.88 -152.42 1 A PHE 39 -111.54 -163.87 1 A ALA 49 -117.78 -163.96 1 A THR 52 -62.72 -170.62 1 A GLU 55 -42.48 -13.24 1 A LEU 67 18.49 65.05 1 A LYS 68 -42.97 151.33 1 A ARG 76 179.31 167.25 1 A PHE 83 -29.23 -31.33 1 A GLN 85 -107.50 64.82 1 A CYS 86 -89.09 -91.99 1 A THR 93 -62.51 42.13 1 A PRO 95 -48.97 -89.02 1 A GLU 96 -26.70 -34.36 1 A GLU 102 -54.05 -0.23 1 A ASN 106 -49.46 106.75 1 A HIS 107 68.05 -144.56 1 A CYS 110 -115.01 -159.83 1 A SER 111 -151.97 57.00 1 A THR 112 0.93 -71.81 1 A ALA 125 -177.41 114.95 1 A GLU 126 -66.04 91.03 1 A GLU 129 -27.22 -46.68 1 A THR 163 -33.02 -12.93 1 A LEU 168 46.69 11.55 1 A ASN 180 -115.83 62.87 1 A SER 183 59.43 -159.33 1 A HIS 184 -19.10 138.36 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP UVD_NEU2.PARAM UVD_NEU2.TOP 59.9 0.85 6.95 0.00 0.85 0.00 -1.71 0.399 0.016 0.214 2.40 25.29 650 5960 10.9 84.2 RANDOM 185038.81 0.00 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT semi-reduced CPDase (A. thaliana) [delta 90-115] Engh & Huber FLAT MODEL 236.9 0.357 0.59 0.42 5.00 0.85 0.64 2.40 25.29 94 1614 62 0 1458 0.013 2.1 25.2 1.02 2.65 3.00 4.24 3.50 4.09 3.50 6.01 4.00 0.477 0.048 0.431 2.55 97 829 6 10.5 79.8 38.4 2.40 50 1JH7 7212 7212 0.0 0.048 1 15 3 90.3 0.466 2.40 2.49 1 3 95.4 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 Semi-reduced Inhibitor-bound Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N A SER 19 A SER 19 HELX_P A PHE 34 A PHE 34 1 1 16 A ALA 53 A ALA 53 HELX_P A ASP 65 A ASP 65 1 2 13 A THR 94 A THR 94 HELX_P A GLU 99 A GLU 99 1 3 6 A THR 128 A THR 128 HELX_P A TYR 140 A TYR 140 1 4 13 disulf 2.028 A CYS 64 A SG CYS 64 1_555 A CYS 177 A SG CYS 177 1_555 HYDROLASE ADP-ribose 1'', 2''-cyclic phosphate, RNA processing, 2', 3'-cyclic nucleotide phosphodiesterase, 3'-cyclic uridine vanadate, HYDROLASE CPD_ARATH UNP 1 1 O04147 MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVSTG TFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCK TDTEDKTLETWETVAVCNLNP 1 181 1JH7 1 181 O04147 A 1 1 181 1 expression tag GLY 182 1JH7 A O04147 UNP 182 1 expression tag SER 183 1JH7 A O04147 UNP 183 1 expression tag HIS 184 1JH7 A O04147 UNP 184 1 expression tag HIS 185 1JH7 A O04147 UNP 185 1 expression tag HIS 186 1JH7 A O04147 UNP 186 1 expression tag HIS 187 1JH7 A O04147 UNP 187 1 expression tag HIS 188 1JH7 A O04147 UNP 188 1 expression tag HIS 189 1JH7 A O04147 UNP 189 4 2 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 43 A VAL 43 A LEU 51 A LEU 51 A ASP 7 A ASP 7 A LEU 14 A LEU 14 A ARG 155 A ARG 155 A LYS 160 A LYS 160 A GLU 172 A GLU 172 A ASN 178 A ASN 178 A THR 71 A THR 71 A THR 73 A THR 73 A SER 150 A SER 150 A ARG 152 A ARG 152 A ARG 76 A ARG 76 A PHE 82 A PHE 82 A GLN 85 A GLN 85 A LEU 90 A LEU 90 A HIS 119 A HIS 119 A LEU 123 A LEU 123 BINDING SITE FOR RESIDUE SO4 A 212 A SO4 212 Software 4 BINDING SITE FOR RESIDUE SO4 A 213 A SO4 213 Software 3 BINDING SITE FOR RESIDUE SO4 A 214 A SO4 214 Software 3 BINDING SITE FOR RESIDUE SO4 A 215 A SO4 215 Software 6 BINDING SITE FOR RESIDUE UVC A 201 A UVC 201 Software 14 BINDING SITE FOR RESIDUE UVC A 202 A UVC 202 Software 8 A SER 78 A SER 78 4 1_555 A HOH 350 H HOH 4 1_555 A HOH 368 H HOH 4 1_555 A HOH 369 H HOH 4 1_555 A HOH 317 H HOH 3 12_555 A HOH 392 H HOH 3 12_555 A HOH 392 H HOH 3 1_555 A SO4 215 E SO4 3 2_655 A SO4 215 E SO4 3 1_555 A SO4 215 E SO4 3 3_665 A GLU 28 A GLU 28 6 1_555 A GLU 28 A GLU 28 6 2_655 A GLU 28 A GLU 28 6 3_665 A SO4 214 D SO4 6 1_555 A SO4 214 D SO4 6 3_665 A SO4 214 D SO4 6 2_655 A SER 10 A SER 10 14 1_555 A TRP 12 A TRP 12 14 1_555 A HIS 42 A HIS 42 14 1_555 A THR 44 A THR 44 14 1_555 A TYR 50 A TYR 50 14 18_655 A PHE 84 A PHE 84 14 1_555 A HIS 119 A HIS 119 14 1_555 A SER 121 A SER 121 14 1_555 A TYR 124 A TYR 124 14 1_555 A THR 161 A THR 161 14 1_555 A THR 163 A THR 163 14 1_555 A TRP 171 A TRP 171 14 1_555 A HOH 372 H HOH 14 1_555 A HOH 373 H HOH 14 1_555 A ARG 31 A ARG 31 8 1_555 A ARG 31 A ARG 31 8 2_655 A ARG 31 A ARG 31 8 3_665 A GLY 36 A GLY 36 8 1_555 A PRO 37 A PRO 37 8 1_555 A ARG 38 A ARG 38 8 1_555 A PHE 39 A PHE 39 8 1_555 A LEU 168 A LEU 168 8 1_555 155 H 3 2