0.01397 0.00000 0.00000 0.00000 0.01016 0.00000 0.00000 0.00000 0.00704 0.00000 0.00000 0.00000 Qiu, X. Janson, C.A. Smith, W.W. Jarvest, R.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 71.560 98.450 142.130 C17 H23 N3 O9 413.379 [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT-3-YL)- ACETIC ACID SB-219383 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C N 7 N C N 8 S C N 9 N C N 10 N N N 11 S C N 12 N C N 13 N O N 14 N O N 15 N N N 16 N O N 17 S C N 18 N N N 19 S C N 20 R C N 21 R C N 22 S C N 23 N O N 24 N O N 25 N C N 26 N O N 27 N O N 28 N O N 29 N O N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N N N 54 S C N 55 N C N 56 N O N 57 N C N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N N N 67 S C N 68 N C N 69 N O N 70 N C N 71 N C N 72 N C N 73 N N N 74 N C N 75 N N N 76 N N N 77 N O N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N N N 94 S C N 95 N C N 96 N O N 97 N C N 98 N C N 99 N O N 100 N N N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N N N 111 S C N 112 N C N 113 N O N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 R C N 128 N C N 129 N O N 130 N C N 131 N S N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 N C N 181 N C N 182 N O N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N C N 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C N 344 N O N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 R C N 358 N O N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N N Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C N 426 N C N 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H Y 1 N doub Y 2 N sing N 3 N sing Y 4 N sing N 5 N sing Y 6 N doub N 7 N sing Y 8 N sing N 9 N sing Y 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N doub N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N sing Y 195 N doub Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing Y 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing Y 300 N doub Y 301 N sing Y 302 N sing N 303 N sing Y 304 N doub N 305 N sing Y 306 N doub N 307 N sing Y 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing US Protein Sci. PRCIEI 0795 0961-8368 10 2008 2016 10.1110/ps.18001 11567092 Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors. 2001 10.2210/pdb1jii/pdb pdb_00001jii 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 AREA DETECTOR 1996-06-06 SIEMENS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 47655.449 tyrosyl-tRNA synthetase 6.1.1.1 1 man polymer 413.379 [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT-3-YL)- ACETIC ACID 1 syn non-polymer TYROSINE--TRNA LIGASE; TYRRS; Tyrosyl-Transfer RNA Synthetase E.C.6.1.1.1 no no MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGD PSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLE HGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRIS QALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI DGEFTIIRRGKKKYFMVNYQ MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGD PSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLE HGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRIS QALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI DGEFTIIRRGKKKYFMVNYQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Staphylococcus Escherichia sample 1280 Staphylococcus aureus aureus N315 562 Escherichia coli 1 2.63 53.16 VAPOR DIFFUSION, SITTING DROP 7.25 PEG 1000, CaCl2, pH 7.25, VAPOR DIFFUSION, SITTING DROP at 298K 298 software chem_comp_atom chem_comp_bond database_2 struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Derived calculations Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2001-10-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-02-07 1 5 2024-04-03 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id same protein, different inhibitor same protein, different inhibitor same protein, different inhibitor RCSB Y RCSB 2001-07-02 REL 383 [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT-3-YL)- ACETIC ACID B. stearothermophilus Other experimental model 383 321 2 383 383 421 A n 1 1 A THR 2 n 2 THR 2 A ASN 3 n 3 ASN 3 A VAL 4 n 4 VAL 4 A LEU 5 n 5 LEU 5 A ILE 6 n 6 ILE 6 A GLU 7 n 7 GLU 7 A ASP 8 n 8 ASP 8 A LEU 9 n 9 LEU 9 A LYS 10 n 10 LYS 10 A TRP 11 n 11 TRP 11 A ARG 12 n 12 ARG 12 A GLY 13 n 13 GLY 13 A LEU 14 n 14 LEU 14 A ILE 15 n 15 ILE 15 A TYR 16 n 16 TYR 16 A GLN 17 n 17 GLN 17 A GLN 18 n 18 GLN 18 A THR 19 n 19 THR 19 A ASP 20 n 20 ASP 20 A GLU 21 n 21 GLU 21 A GLN 22 n 22 GLN 22 A GLY 23 n 23 GLY 23 A ILE 24 n 24 ILE 24 A GLU 25 n 25 GLU 25 A ASP 26 n 26 ASP 26 A LEU 27 n 27 LEU 27 A LEU 28 n 28 LEU 28 A ASN 29 n 29 ASN 29 A LYS 30 n 30 LYS 30 A GLU 31 n 31 GLU 31 A GLN 32 n 32 GLN 32 A VAL 33 n 33 VAL 33 A THR 34 n 34 THR 34 A LEU 35 n 35 LEU 35 A TYR 36 n 36 TYR 36 A CYS 37 n 37 CYS 37 A GLY 38 n 38 GLY 38 A ALA 39 n 39 ALA 39 A ASP 40 n 40 ASP 40 A PRO 41 n 41 PRO 41 A THR 42 n 42 THR 42 A ALA 43 n 43 ALA 43 A ASP 44 n 44 ASP 44 A SER 45 n 45 SER 45 A LEU 46 n 46 LEU 46 A HIS 47 n 47 HIS 47 A ILE 48 n 48 ILE 48 A GLY 49 n 49 GLY 49 A HIS 50 n 50 HIS 50 A LEU 51 n 51 LEU 51 A LEU 52 n 52 LEU 52 A PRO 53 n 53 PRO 53 A PHE 54 n 54 PHE 54 A LEU 55 n 55 LEU 55 A THR 56 n 56 THR 56 A LEU 57 n 57 LEU 57 A ARG 58 n 58 ARG 58 A ARG 59 n 59 ARG 59 A PHE 60 n 60 PHE 60 A GLN 61 n 61 GLN 61 A GLU 62 n 62 GLU 62 A HIS 63 n 63 HIS 63 A GLY 64 n 64 GLY 64 A HIS 65 n 65 HIS 65 A ARG 66 n 66 ARG 66 A PRO 67 n 67 PRO 67 A ILE 68 n 68 ILE 68 A VAL 69 n 69 VAL 69 A LEU 70 n 70 LEU 70 A ILE 71 n 71 ILE 71 A GLY 72 n 72 GLY 72 A GLY 73 n 73 GLY 73 A GLY 74 n 74 GLY 74 A THR 75 n 75 THR 75 A GLY 76 n 76 GLY 76 A MET 77 n 77 MET 77 A ILE 78 n 78 ILE 78 A GLY 79 n 79 GLY 79 A ASP 80 n 80 ASP 80 A PRO 81 n 81 PRO 81 A SER 82 n 82 SER 82 A GLY 83 n 83 GLY 83 A LYS 84 n 84 LYS 84 A SER 85 n 85 SER 85 A GLU 86 n 86 GLU 86 A GLU 87 n 87 GLU 87 A ARG 88 n 88 ARG 88 A VAL 89 n 89 VAL 89 A LEU 90 n 90 LEU 90 A GLN 91 n 91 GLN 91 A THR 92 n 92 THR 92 A GLU 93 n 93 GLU 93 A GLU 94 n 94 GLU 94 A GLN 95 n 95 GLN 95 A VAL 96 n 96 VAL 96 A ASP 97 n 97 ASP 97 A LYS 98 n 98 LYS 98 A ASN 99 n 99 ASN 99 A ILE 100 n 100 ILE 100 A GLU 101 n 101 GLU 101 A GLY 102 n 102 GLY 102 A ILE 103 n 103 ILE 103 A SER 104 n 104 SER 104 A LYS 105 n 105 LYS 105 A GLN 106 n 106 GLN 106 A MET 107 n 107 MET 107 A HIS 108 n 108 HIS 108 A ASN 109 n 109 ASN 109 A ILE 110 n 110 ILE 110 A PHE 111 n 111 PHE 111 A GLU 112 n 112 GLU 112 A PHE 113 n 113 PHE 113 A GLY 114 n 114 GLY 114 A THR 115 n 115 THR 115 A ASP 116 n 116 ASP 116 A HIS 117 n 117 HIS 117 A GLY 118 n 118 GLY 118 A ALA 119 n 119 ALA 119 A VAL 120 n 120 VAL 120 A LEU 121 n 121 LEU 121 A VAL 122 n 122 VAL 122 A ASN 123 n 123 ASN 123 A ASN 124 n 124 ASN 124 A ARG 125 n 125 ARG 125 A ASP 126 n 126 ASP 126 A TRP 127 n 127 TRP 127 A LEU 128 n 128 LEU 128 A GLY 129 n 129 GLY 129 A GLN 130 n 130 GLN 130 A ILE 131 n 131 ILE 131 A SER 132 n 132 SER 132 A LEU 133 n 133 LEU 133 A ILE 134 n 134 ILE 134 A SER 135 n 135 SER 135 A PHE 136 n 136 PHE 136 A LEU 137 n 137 LEU 137 A ARG 138 n 138 ARG 138 A ASP 139 n 139 ASP 139 A TYR 140 n 140 TYR 140 A GLY 141 n 141 GLY 141 A LYS 142 n 142 LYS 142 A HIS 143 n 143 HIS 143 A VAL 144 n 144 VAL 144 A GLY 145 n 145 GLY 145 A VAL 146 n 146 VAL 146 A ASN 147 n 147 ASN 147 A TYR 148 n 148 TYR 148 A MET 149 n 149 MET 149 A LEU 150 n 150 LEU 150 A GLY 151 n 151 GLY 151 A LYS 152 n 152 LYS 152 A ASP 153 n 153 ASP 153 A SER 154 n 154 SER 154 A ILE 155 n 155 ILE 155 A GLN 156 n 156 GLN 156 A SER 157 n 157 SER 157 A ARG 158 n 158 ARG 158 A LEU 159 n 159 LEU 159 A GLU 160 n 160 GLU 160 A HIS 161 n 161 HIS 161 A GLY 162 n 162 GLY 162 A ILE 163 n 163 ILE 163 A SER 164 n 164 SER 164 A TYR 165 n 165 TYR 165 A THR 166 n 166 THR 166 A GLU 167 n 167 GLU 167 A PHE 168 n 168 PHE 168 A THR 169 n 169 THR 169 A TYR 170 n 170 TYR 170 A THR 171 n 171 THR 171 A ILE 172 n 172 ILE 172 A LEU 173 n 173 LEU 173 A GLN 174 n 174 GLN 174 A ALA 175 n 175 ALA 175 A ILE 176 n 176 ILE 176 A ASP 177 n 177 ASP 177 A PHE 178 n 178 PHE 178 A GLY 179 n 179 GLY 179 A HIS 180 n 180 HIS 180 A LEU 181 n 181 LEU 181 A ASN 182 n 182 ASN 182 A ARG 183 n 183 ARG 183 A GLU 184 n 184 GLU 184 A LEU 185 n 185 LEU 185 A ASN 186 n 186 ASN 186 A CYS 187 n 187 CYS 187 A LYS 188 n 188 LYS 188 A ILE 189 n 189 ILE 189 A GLN 190 n 190 GLN 190 A VAL 191 n 191 VAL 191 A GLY 192 n 192 GLY 192 A GLY 193 n 193 GLY 193 A SER 194 n 194 SER 194 A ASP 195 n 195 ASP 195 A GLN 196 n 196 GLN 196 A TRP 197 n 197 TRP 197 A GLY 198 n 198 GLY 198 A ASN 199 n 199 ASN 199 A ILE 200 n 200 ILE 200 A THR 201 n 201 THR 201 A SER 202 n 202 SER 202 A GLY 203 n 203 GLY 203 A ILE 204 n 204 ILE 204 A GLU 205 n 205 GLU 205 A LEU 206 n 206 LEU 206 A MET 207 n 207 MET 207 A ARG 208 n 208 ARG 208 A ARG 209 n 209 ARG 209 A MET 210 n 210 MET 210 A TYR 211 n 211 TYR 211 A GLY 212 n 212 GLY 212 A GLN 213 n 213 GLN 213 A THR 214 n 214 THR 214 A ASP 215 n 215 ASP 215 A ALA 216 n 216 ALA 216 A TYR 217 n 217 TYR 217 A GLY 218 n 218 GLY 218 A LEU 219 n 219 LEU 219 A THR 220 n 220 THR 220 A ILE 221 n 221 ILE 221 A PRO 222 n 222 PRO 222 A LEU 223 n 223 LEU 223 A VAL 224 n 224 VAL 224 A THR 225 n 225 THR 225 A LYS 226 n 226 LYS 226 A SER 227 n 227 SER 227 A ASP 228 n 228 ASP 228 A GLY 229 n 229 GLY 229 A LYS 230 n 230 LYS 230 A LYS 231 n 231 LYS 231 A PHE 232 n 232 PHE 232 A GLY 233 n 233 GLY 233 A LYS 234 n 234 LYS 234 A SER 235 n 235 SER 235 A GLU 236 n 236 GLU 236 A SER 237 n 237 SER 237 A GLY 238 n 238 GLY 238 A ALA 239 n 239 ALA 239 A VAL 240 n 240 VAL 240 A TRP 241 n 241 TRP 241 A LEU 242 n 242 LEU 242 A ASP 243 n 243 ASP 243 A ALA 244 n 244 ALA 244 A GLU 245 n 245 GLU 245 A LYS 246 n 246 LYS 246 A THR 247 n 247 THR 247 A SER 248 n 248 SER 248 A PRO 249 n 249 PRO 249 A TYR 250 n 250 TYR 250 A GLU 251 n 251 GLU 251 A PHE 252 n 252 PHE 252 A TYR 253 n 253 TYR 253 A GLN 254 n 254 GLN 254 A PHE 255 n 255 PHE 255 A TRP 256 n 256 TRP 256 A ILE 257 n 257 ILE 257 A ASN 258 n 258 ASN 258 A GLN 259 n 259 GLN 259 A SER 260 n 260 SER 260 A ASP 261 n 261 ASP 261 A GLU 262 n 262 GLU 262 A ASP 263 n 263 ASP 263 A VAL 264 n 264 VAL 264 A ILE 265 n 265 ILE 265 A LYS 266 n 266 LYS 266 A PHE 267 n 267 PHE 267 A LEU 268 n 268 LEU 268 A LYS 269 n 269 LYS 269 A TYR 270 n 270 TYR 270 A PHE 271 n 271 PHE 271 A THR 272 n 272 THR 272 A PHE 273 n 273 PHE 273 A LEU 274 n 274 LEU 274 A GLY 275 n 275 GLY 275 A LYS 276 n 276 LYS 276 A GLU 277 n 277 GLU 277 A GLU 278 n 278 GLU 278 A ILE 279 n 279 ILE 279 A ASP 280 n 280 ASP 280 A ARG 281 n 281 ARG 281 A LEU 282 n 282 LEU 282 A GLU 283 n 283 GLU 283 A GLN 284 n 284 GLN 284 A SER 285 n 285 SER 285 A LYS 286 n 286 LYS 286 A ASN 287 n 287 ASN 287 A GLU 288 n 288 GLU 288 A ALA 289 n 289 ALA 289 A PRO 290 n 290 PRO 290 A HIS 291 n 291 HIS 291 A LEU 292 n 292 LEU 292 A ARG 293 n 293 ARG 293 A GLU 294 n 294 GLU 294 A ALA 295 n 295 ALA 295 A GLN 296 n 296 GLN 296 A LYS 297 n 297 LYS 297 A THR 298 n 298 THR 298 A LEU 299 n 299 LEU 299 A ALA 300 n 300 ALA 300 A GLU 301 n 301 GLU 301 A GLU 302 n 302 GLU 302 A VAL 303 n 303 VAL 303 A THR 304 n 304 THR 304 A LYS 305 n 305 LYS 305 A PHE 306 n 306 PHE 306 A ILE 307 n 307 ILE 307 A HIS 308 n 308 HIS 308 A GLY 309 n 309 GLY 309 A GLU 310 n 310 GLU 310 A ASP 311 n 311 ASP 311 A ALA 312 n 312 ALA 312 A LEU 313 n 313 LEU 313 A ASN 314 n 314 ASN 314 A ASP 315 n 315 ASP 315 A ALA 316 n 316 ALA 316 A ILE 317 n 317 ILE 317 A ARG 318 n 318 ARG 318 A ILE 319 n 319 ILE 319 A SER 320 n 320 SER 320 A n 321 321 A n 322 322 A n 323 323 A n 324 324 A n 325 325 A n 326 326 A n 327 327 A n 328 328 A n 329 329 A n 330 330 A n 331 331 A n 332 332 A n 333 333 A n 334 334 A n 335 335 A n 336 336 A n 337 337 A n 338 338 A n 339 339 A n 340 340 A n 341 341 A n 342 342 A n 343 343 A n 344 344 A n 345 345 A n 346 346 A n 347 347 A n 348 348 A n 349 349 A n 350 350 A n 351 351 A n 352 352 A n 353 353 A n 354 354 A n 355 355 A n 356 356 A n 357 357 A n 358 358 A n 359 359 A n 360 360 A n 361 361 A n 362 362 A n 363 363 A n 364 364 A n 365 365 A n 366 366 A n 367 367 A n 368 368 A n 369 369 A n 370 370 A n 371 371 A n 372 372 A n 373 373 A n 374 374 A n 375 375 A n 376 376 A n 377 377 A n 378 378 A n 379 379 A n 380 380 A n 381 381 A n 382 382 A n 383 383 A n 384 384 A n 385 385 A n 386 386 A n 387 387 A n 388 388 A n 389 389 A n 390 390 A n 391 391 A n 392 392 A n 393 393 A n 394 394 A n 395 395 A n 396 396 A n 397 397 A n 398 398 A n 399 399 A n 400 400 A n 401 401 A n 402 402 A n 403 403 A n 404 404 A n 405 405 A n 406 406 A n 407 407 A n 408 408 A n 409 409 A n 410 410 A n 411 411 A n 412 412 A n 413 413 A n 414 414 A n 415 415 A n 416 416 A n 417 417 A n 418 418 A n 419 419 A n 420 420 A author_defined_assembly 2 dimeric software_defined_assembly PISA,PQS 2 dimeric 4580 -38 27850 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_556 -x,y,-z+3/2 crystal symmetry operation 0.0000000000 0.0000000000 213.1950000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 x,-y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 142.1300000000 A O GLN 17 A O GLN 17 A N THR 220 A N THR 220 A N LEU 219 A N LEU 219 A O GLN 190 A O GLN 190 A N ILE 189 A N ILE 189 A O THR 34 A O THR 34 A N LEU 35 A N LEU 35 A O ARG 66 A O ARG 66 A N VAL 69 A N VAL 69 A O VAL 120 A O VAL 120 1 A MET 1 A MET 1 1 Y 1 A GLN 321 A GLN 321 1 Y 1 A ALA 322 A ALA 322 1 Y 1 A LEU 323 A LEU 323 1 Y 1 A PHE 324 A PHE 324 1 Y 1 A SER 325 A SER 325 1 Y 1 A GLY 326 A GLY 326 1 Y 1 A ASP 327 A ASP 327 1 Y 1 A LEU 328 A LEU 328 1 Y 1 A LYS 329 A LYS 329 1 Y 1 A SER 330 A SER 330 1 Y 1 A LEU 331 A LEU 331 1 Y 1 A SER 332 A SER 332 1 Y 1 A ALA 333 A ALA 333 1 Y 1 A LYS 334 A LYS 334 1 Y 1 A GLU 335 A GLU 335 1 Y 1 A LEU 336 A LEU 336 1 Y 1 A LYS 337 A LYS 337 1 Y 1 A ASP 338 A ASP 338 1 Y 1 A GLY 339 A GLY 339 1 Y 1 A PHE 340 A PHE 340 1 Y 1 A LYS 341 A LYS 341 1 Y 1 A ASP 342 A ASP 342 1 Y 1 A VAL 343 A VAL 343 1 Y 1 A PRO 344 A PRO 344 1 Y 1 A GLN 345 A GLN 345 1 Y 1 A VAL 346 A VAL 346 1 Y 1 A THR 347 A THR 347 1 Y 1 A LEU 348 A LEU 348 1 Y 1 A SER 349 A SER 349 1 Y 1 A ASN 350 A ASN 350 1 Y 1 A ASP 351 A ASP 351 1 Y 1 A THR 352 A THR 352 1 Y 1 A THR 353 A THR 353 1 Y 1 A ASN 354 A ASN 354 1 Y 1 A ILE 355 A ILE 355 1 Y 1 A VAL 356 A VAL 356 1 Y 1 A GLU 357 A GLU 357 1 Y 1 A VAL 358 A VAL 358 1 Y 1 A LEU 359 A LEU 359 1 Y 1 A ILE 360 A ILE 360 1 Y 1 A GLU 361 A GLU 361 1 Y 1 A THR 362 A THR 362 1 Y 1 A GLY 363 A GLY 363 1 Y 1 A ILE 364 A ILE 364 1 Y 1 A SER 365 A SER 365 1 Y 1 A PRO 366 A PRO 366 1 Y 1 A SER 367 A SER 367 1 Y 1 A LYS 368 A LYS 368 1 Y 1 A ARG 369 A ARG 369 1 Y 1 A GLN 370 A GLN 370 1 Y 1 A ALA 371 A ALA 371 1 Y 1 A ARG 372 A ARG 372 1 Y 1 A GLU 373 A GLU 373 1 Y 1 A ASP 374 A ASP 374 1 Y 1 A VAL 375 A VAL 375 1 Y 1 A ASN 376 A ASN 376 1 Y 1 A ASN 377 A ASN 377 1 Y 1 A GLY 378 A GLY 378 1 Y 1 A ALA 379 A ALA 379 1 Y 1 A ILE 380 A ILE 380 1 Y 1 A TYR 381 A TYR 381 1 Y 1 A ILE 382 A ILE 382 1 Y 1 A ASN 383 A ASN 383 1 Y 1 A GLY 384 A GLY 384 1 Y 1 A GLU 385 A GLU 385 1 Y 1 A ARG 386 A ARG 386 1 Y 1 A GLN 387 A GLN 387 1 Y 1 A GLN 388 A GLN 388 1 Y 1 A ASP 389 A ASP 389 1 Y 1 A VAL 390 A VAL 390 1 Y 1 A ASN 391 A ASN 391 1 Y 1 A TYR 392 A TYR 392 1 Y 1 A ALA 393 A ALA 393 1 Y 1 A LEU 394 A LEU 394 1 Y 1 A ALA 395 A ALA 395 1 Y 1 A PRO 396 A PRO 396 1 Y 1 A GLU 397 A GLU 397 1 Y 1 A ASP 398 A ASP 398 1 Y 1 A LYS 399 A LYS 399 1 Y 1 A ILE 400 A ILE 400 1 Y 1 A ASP 401 A ASP 401 1 Y 1 A GLY 402 A GLY 402 1 Y 1 A GLU 403 A GLU 403 1 Y 1 A PHE 404 A PHE 404 1 Y 1 A THR 405 A THR 405 1 Y 1 A ILE 406 A ILE 406 1 Y 1 A ILE 407 A ILE 407 1 Y 1 A ARG 408 A ARG 408 1 Y 1 A ARG 409 A ARG 409 1 Y 1 A GLY 410 A GLY 410 1 Y 1 A LYS 411 A LYS 411 1 Y 1 A LYS 412 A LYS 412 1 Y 1 A LYS 413 A LYS 413 1 Y 1 A TYR 414 A TYR 414 1 Y 1 A PHE 415 A PHE 415 1 Y 1 A MET 416 A MET 416 1 Y 1 A VAL 417 A VAL 417 1 Y 1 A ASN 418 A ASN 418 1 Y 1 A TYR 419 A TYR 419 1 Y 1 A GLN 420 A GLN 420 1 Y 1 A TYR 250 0.089 SIDE CHAIN 1 A ASN 3 169.06 25.85 1 A GLN 17 -171.39 143.58 1 A ALA 43 -171.12 -177.29 1 A ILE 48 -30.54 -39.22 1 A LEU 52 -53.96 -71.19 1 A MET 77 -43.06 -18.93 1 A LYS 84 -47.53 159.97 1 A SER 85 -143.54 43.27 1 A ARG 88 -69.02 -148.86 1 A VAL 89 -168.54 100.37 1 A HIS 108 -50.83 -0.51 1 A HIS 117 -151.72 78.55 1 A ALA 119 51.00 113.06 1 A ASN 124 -63.02 6.73 1 A ILE 131 -37.20 125.55 1 A ARG 138 -57.77 -82.41 1 A SER 154 -67.92 -84.85 1 A LEU 159 -38.12 -39.67 1 A ASN 186 99.06 19.84 1 A TYR 211 -157.75 -9.00 1 A GLN 213 18.83 82.35 1 A THR 214 -61.41 51.44 1 A ASP 215 79.83 51.38 1 A PRO 222 -73.53 -167.12 1 A LYS 231 -18.32 73.27 1 A PHE 232 -37.91 144.11 1 A VAL 240 -63.50 82.41 1 A LEU 242 -71.08 21.55 1 A LYS 246 -165.25 -35.55 1 A THR 247 -160.71 104.78 1 A PHE 252 -63.15 -74.43 1 A TYR 253 -21.88 -78.89 1 A SER 260 -27.08 84.42 1 A ASP 261 2.22 -50.56 1 A GLU 262 -55.08 -75.54 1 A VAL 264 -102.88 -67.64 1 A ALA 295 -54.82 -73.44 1 A GLN 296 -46.68 -9.02 1 A LEU 299 -61.34 -79.95 1 A ILE 319 178.40 22.76 0.3350000 0.2690000 3.2 8.0 350 7179 5.0 random 1 THROUGHOUT 2.0 MOLECULAR REPLACEMENT B. stearothermophilus 3.2 8.0 0 2585 29 0 2556 0.010 1.9 3.2 27.0 1JII 8608 8530 2.0 1.0 0.1220000 1 7.9 4 99 0.2960000 3.20 3.24 1.9 1 4 99 model building X-PLOR refinement X-PLOR 3.1 data reduction X-GEN data scaling X-GEN phasing X-PLOR Crystal structure of S. aureus TyrRS in complex with SB-219383 1 N N 2 N N the biological assembly is a dimer generated from the monomer in ASU and the operation -x,y,-z+1/2 ---- operation 3 A ASN 3 A ASN 3 HELX_P A GLY 13 A GLY 13 1 1 11 A ASP 20 A ASP 20 HELX_P A GLU 31 A GLU 31 1 2 12 A HIS 47 A HIS 47 HELX_P A GLN 61 A GLN 61 1 3 15 A THR 75 A THR 75 HELX_P A GLY 79 A GLY 79 5 4 5 A THR 92 A THR 92 HELX_P A PHE 111 A PHE 111 1 5 20 A ASN 124 A ASN 124 HELX_P A GLY 129 A GLY 129 1 6 6 A SER 132 A SER 132 HELX_P A TYR 140 A TYR 140 1 7 9 A GLY 141 A GLY 141 HELX_P A VAL 144 A VAL 144 5 8 4 A GLY 145 A GLY 145 HELX_P A LEU 150 A LEU 150 1 9 6 A SER 154 A SER 154 HELX_P A GLY 162 A GLY 162 1 10 9 A SER 164 A SER 164 HELX_P A LEU 185 A LEU 185 1 11 22 A GLN 196 A GLN 196 HELX_P A TYR 211 A TYR 211 1 12 16 A SER 248 A SER 248 HELX_P A ASN 258 A ASN 258 1 13 11 A SER 260 A SER 260 HELX_P A ASP 263 A ASP 263 5 14 4 A VAL 264 A VAL 264 HELX_P A THR 272 A THR 272 1 15 9 A GLY 275 A GLY 275 HELX_P A ALA 289 A ALA 289 1 16 15 A PRO 290 A PRO 290 HELX_P A ARG 293 A ARG 293 5 17 4 A GLU 294 A GLU 294 HELX_P A GLY 309 A GLY 309 1 18 16 A GLU 310 A GLU 310 HELX_P A ARG 318 A ARG 318 1 19 9 LIGASE tyrosyl-trna synthetase, staphylococcus aureus, truncation, structure based inhibitor design, LIGASE BAB42818 GB 1 1 13701524 MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGD PSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLE HGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRIS QALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI DGEFTIIRRGKKKYFMVNYQ 1 420 1JII 1 420 13701524 A 1 1 420 6 anti-parallel parallel parallel parallel parallel A GLN 17 A GLN 17 A GLN 18 A GLN 18 A TYR 217 A TYR 217 A ILE 221 A ILE 221 A ILE 189 A ILE 189 A GLY 193 A GLY 193 A THR 34 A THR 34 A ALA 39 A ALA 39 A ARG 66 A ARG 66 A ILE 71 A ILE 71 A VAL 120 A VAL 120 A ASN 123 A ASN 123 BINDING SITE FOR RESIDUE 383 A 421 A 383 421 Software 15 A TYR 36 A TYR 36 15 1_555 A GLY 38 A GLY 38 15 1_555 A ALA 39 A ALA 39 15 1_555 A ASP 40 A ASP 40 15 1_555 A GLY 49 A GLY 49 15 1_555 A HIS 50 A HIS 50 15 1_555 A PRO 53 A PRO 53 15 1_555 A LEU 70 A LEU 70 15 1_555 A ASP 80 A ASP 80 15 1_555 A ASN 124 A ASN 124 15 1_555 A TYR 170 A TYR 170 15 1_555 A GLN 174 A GLN 174 15 1_555 A ASP 177 A ASP 177 15 1_555 A ASP 195 A ASP 195 15 1_555 A GLN 196 A GLN 196 15 1_555 20 orthorhombic C 2 2 21