0.014310
0.000000
0.000000
0.000000
0.012167
0.000000
0.000000
0.000000
0.010409
0.00000
0.00000
0.00000
Kim, S.-S.
Tam, J.K.
Wang, A.F.
Hegde, R.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
69.880
82.190
96.070
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
31245
31254
10.1074/jbc.M004541200
10906136
The structural basis of DNA target discrimination by papillomavirus E2 proteins.
2000
10.2210/pdb1jj4/pdb
pdb_00001jj4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103
1
mirrors
IMAGE PLATE
1999-01-01
RIGAKU RAXIS IIC
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
4898.191
E2 binding site DNA
2
syn
polymer
9588.977
Regulatory protein E2
DNA-binding domain
2
man
polymer
18.015
water
190
nat
water
no
no
(DC)(DA)(DA)(DC)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DG)(DT)(DT)(DG)
CAACCGAATTCGGTTG
C,D
polydeoxyribonucleotide
no
no
GSHMTPIIHLKGDRNSLKCLRYRLRKHSDHYRDISSTWHWTGAGNEKTGILTVTYHSETQRTKFLNTVAIPDSVQILVGY
MTM
GSHMTPIIHLKGDRNSLKCLRYRLRKHSDHYRDISSTWHWTGAGNEKTGILTVTYHSETQRTKFLNTVAIPDSVQILVGY
MTM
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alphapapillomavirus
Human papillomavirus - 18
Escherichia
Escherichia coli
sample
E2
333761
Human papillomavirus type 18
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET15b
1
2.35
47.64
VAPOR DIFFUSION, HANGING DROP
4.7
MPD, sodium acetate, calcium chloride, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
MPD
1
sodium acetate
1
CaCl2
1
-7.508
1
19
C
602
D
917
0.561
C_DC602:DG917_D
1
-1.572
0.074
-0.055
0.035
6.698
1
20
C
603
D
916
0.780
C_DA603:DT916_D
2
-6.329
0.164
-0.370
-0.200
6.372
1
20
C
604
D
915
-3.247
C_DA604:DT915_D
3
-15.955
0.110
0.042
0.067
2.562
1
19
C
605
D
914
-0.806
C_DC605:DG914_D
4
-11.700
0.215
-0.135
0.093
4.375
1
19
C
606
D
913
-3.840
C_DC606:DG913_D
5
-6.011
-0.102
-0.325
-0.103
15.372
1
19
C
607
D
912
1.778
C_DG607:DC912_D
6
-10.369
-0.071
-0.088
-0.124
-3.916
1
20
C
608
D
911
1.706
C_DA608:DT911_D
7
-12.893
0.164
-0.419
-0.061
3.478
1
20
C
609
D
910
-0.545
C_DA609:DT910_D
8
-12.567
-0.147
0.306
0.203
1.290
1
20
C
610
D
909
-0.578
C_DT610:DA909_D
9
-8.493
-0.015
0.036
-0.062
8.686
1
20
C
611
D
908
1.687
C_DT611:DA908_D
10
-11.160
-0.233
-0.276
0.046
-14.460
1
19
C
612
D
907
2.251
C_DC612:DG907_D
11
-5.197
-0.213
0.378
-0.070
3.264
1
19
C
613
D
906
-3.983
C_DG613:DC906_D
12
-2.671
-0.046
0.013
-0.180
-4.278
1
19
C
614
D
905
5.296
C_DG614:DC905_D
13
-15.160
-0.031
-0.118
-0.090
-10.666
1
20
C
615
D
904
-0.437
C_DT615:DA904_D
14
-18.533
0.034
0.153
0.011
-7.543
1
20
C
616
D
903
2.635
C_DT616:DA903_D
15
-5.845
-0.494
-0.580
-0.238
2.985
1
19
C
617
D
902
-1.921
C_DG617:DC902_D
16
-1.769
0.542
-0.095
-0.093
3.203
29.664
C
C
602
603
13.459
D
D
917
916
3.151
6.818
0.059
0.647
CC_DC602DA603:DT916DG917_DD
1
3.249
-6.414
28.707
-0.154
0.561
3.412
38.761
C
C
603
604
-2.353
D
D
916
915
3.304
-1.553
-1.078
0.753
CC_DA603DA604:DT915DT916_DD
2
-7.220
10.940
38.078
1.331
0.710
3.287
33.900
C
C
604
605
2.750
D
D
915
914
3.324
1.603
0.498
-0.744
CC_DA604DC605:DG914DT915_DD
3
0.069
-0.119
33.863
-1.536
-0.843
3.102
32.784
C
C
605
606
13.169
D
D
914
913
3.261
7.370
-0.599
-0.208
CC_DC605DC606:DG913DG914_DD
4
1.666
-2.977
31.924
-1.619
1.344
3.525
35.103
C
C
606
607
31.105
D
D
913
912
3.258
17.921
0.613
1.365
CC_DC606DG607:DC912DG913_DD
5
1.301
-2.258
30.281
-0.741
-0.799
3.711
37.535
C
C
607
608
5.968
D
D
912
911
3.740
3.827
0.150
-0.067
CC_DG607DA608:DT911DC912_DD
6
4.084
-6.369
37.130
-0.677
0.377
2.919
38.499
C
C
608
609
-6.524
D
D
911
910
2.961
-4.276
-0.218
0.218
CC_DA608DA609:DT910DT911_DD
7
-6.192
9.447
37.783
0.813
-0.367
3.517
37.076
C
C
609
610
-16.703
D
D
910
909
3.438
-10.485
0.028
-0.768
CC_DA609DT610:DA909DT910_DD
8
0.637
-1.015
35.607
0.318
0.049
3.004
39.383
C
C
610
611
-7.172
D
D
909
908
2.992
-4.814
0.428
-0.041
CC_DT610DT611:DA908DA909_DD
9
4.192
-6.246
38.883
0.464
-0.176
3.676
36.308
C
C
611
612
9.856
D
D
908
907
3.813
6.051
-0.483
-0.532
CC_DT611DC612:DG907DA908_DD
10
-9.229
15.032
34.645
-1.846
-0.739
3.119
34.878
C
C
612
613
14.463
D
D
907
906
2.987
8.583
-0.397
0.992
CC_DC612DG613:DC906DG907_DD
11
1.405
-2.368
33.809
0.420
0.864
3.373
32.119
C
C
613
614
11.787
D
D
906
905
3.485
6.475
0.802
-0.436
CC_DG613DG614:DC905DC906_DD
12
1.967
-3.581
31.416
-2.018
-1.076
3.224
34.763
C
C
614
615
8.894
D
D
905
904
3.360
5.294
-0.696
-0.759
CC_DG614DT615:DA904DC905_DD
13
-0.716
1.204
34.363
-2.088
1.055
3.145
40.475
C
C
615
616
-8.013
D
D
904
903
3.152
-5.497
0.975
0.801
CC_DT615DT616:DA903DA904_DD
14
7.674
-11.187
39.404
1.759
-0.571
3.259
33.121
C
C
616
617
13.898
D
D
903
902
3.199
7.829
-0.163
0.667
CC_DT616DG617:DC902DA903_DD
15
-4.440
7.883
31.908
-0.158
-0.468
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2001-07-13
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_software.name
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
E2 DNA-binding domain from human papillomavirus type 16
bovine papillomavirus-1 E2 DNA binding domain bound to its DNA target
Crystal Structure Of The HPV-18 E2 DNA-Binding Domain
RCSB
Y
RCSB
2001-07-03
REL
HOH
water
WAT
1
3
HOH
HOH
1
C
WAT
4
3
HOH
HOH
4
C
WAT
12
3
HOH
HOH
12
C
WAT
16
3
HOH
HOH
16
C
WAT
24
3
HOH
HOH
24
C
WAT
30
3
HOH
HOH
30
C
WAT
40
3
HOH
HOH
40
C
WAT
45
3
HOH
HOH
45
C
WAT
54
3
HOH
HOH
54
C
WAT
58
3
HOH
HOH
58
C
WAT
59
3
HOH
HOH
59
C
WAT
60
3
HOH
HOH
60
C
WAT
67
3
HOH
HOH
67
C
WAT
70
3
HOH
HOH
70
C
WAT
82
3
HOH
HOH
82
C
WAT
91
3
HOH
HOH
91
C
WAT
93
3
HOH
HOH
93
C
WAT
94
3
HOH
HOH
94
C
WAT
95
3
HOH
HOH
95
C
WAT
97
3
HOH
HOH
97
C
WAT
108
3
HOH
HOH
108
C
WAT
109
3
HOH
HOH
109
C
WAT
111
3
HOH
HOH
111
C
WAT
113
3
HOH
HOH
113
C
WAT
114
3
HOH
HOH
114
C
WAT
115
3
HOH
HOH
115
C
WAT
117
3
HOH
HOH
117
C
WAT
128
3
HOH
HOH
128
C
WAT
129
3
HOH
HOH
129
C
WAT
133
3
HOH
HOH
133
C
WAT
136
3
HOH
HOH
136
C
WAT
138
3
HOH
HOH
138
C
WAT
140
3
HOH
HOH
140
C
WAT
163
3
HOH
HOH
163
C
WAT
164
3
HOH
HOH
164
C
WAT
168
3
HOH
HOH
168
C
WAT
170
3
HOH
HOH
170
C
WAT
172
3
HOH
HOH
172
C
WAT
175
3
HOH
HOH
175
C
WAT
179
3
HOH
HOH
179
C
WAT
182
3
HOH
HOH
182
C
WAT
187
3
HOH
HOH
187
C
WAT
188
3
HOH
HOH
188
C
WAT
189
3
HOH
HOH
189
C
WAT
190
3
HOH
HOH
190
C
WAT
202
3
HOH
HOH
202
C
WAT
227
3
HOH
HOH
227
C
WAT
231
3
HOH
HOH
231
C
WAT
239
3
HOH
HOH
239
C
WAT
2
3
HOH
HOH
2
D
WAT
5
3
HOH
HOH
5
D
WAT
6
3
HOH
HOH
6
D
WAT
7
3
HOH
HOH
7
D
WAT
9
3
HOH
HOH
9
D
WAT
14
3
HOH
HOH
14
D
WAT
17
3
HOH
HOH
17
D
WAT
19
3
HOH
HOH
19
D
WAT
20
3
HOH
HOH
20
D
WAT
23
3
HOH
HOH
23
D
WAT
26
3
HOH
HOH
26
D
WAT
31
3
HOH
HOH
31
D
WAT
36
3
HOH
HOH
36
D
WAT
38
3
HOH
HOH
38
D
WAT
46
3
HOH
HOH
46
D
WAT
48
3
HOH
HOH
48
D
WAT
66
3
HOH
HOH
66
D
WAT
68
3
HOH
HOH
68
D
WAT
77
3
HOH
HOH
77
D
WAT
79
3
HOH
HOH
79
D
WAT
80
3
HOH
HOH
80
D
WAT
90
3
HOH
HOH
90
D
WAT
98
3
HOH
HOH
98
D
WAT
99
3
HOH
HOH
99
D
WAT
100
3
HOH
HOH
100
D
WAT
105
3
HOH
HOH
105
D
WAT
135
3
HOH
HOH
135
D
WAT
142
3
HOH
HOH
142
D
WAT
146
3
HOH
HOH
146
D
WAT
151
3
HOH
HOH
151
D
WAT
152
3
HOH
HOH
152
D
WAT
157
3
HOH
HOH
157
D
WAT
158
3
HOH
HOH
158
D
WAT
161
3
HOH
HOH
161
D
WAT
173
3
HOH
HOH
173
D
WAT
200
3
HOH
HOH
200
D
WAT
209
3
HOH
HOH
209
D
WAT
215
3
HOH
HOH
215
D
WAT
219
3
HOH
HOH
219
D
WAT
233
3
HOH
HOH
233
D
WAT
3
3
HOH
HOH
3
A
WAT
8
3
HOH
HOH
8
A
WAT
10
3
HOH
HOH
10
A
WAT
11
3
HOH
HOH
11
A
WAT
13
3
HOH
HOH
13
A
WAT
18
3
HOH
HOH
18
A
WAT
22
3
HOH
HOH
22
A
WAT
25
3
HOH
HOH
25
A
WAT
27
3
HOH
HOH
27
A
WAT
28
3
HOH
HOH
28
A
WAT
32
3
HOH
HOH
32
A
WAT
34
3
HOH
HOH
34
A
WAT
37
3
HOH
HOH
37
A
WAT
51
3
HOH
HOH
51
A
WAT
55
3
HOH
HOH
55
A
WAT
57
3
HOH
HOH
57
A
WAT
62
3
HOH
HOH
62
A
WAT
75
3
HOH
HOH
75
A
WAT
92
3
HOH
HOH
92
A
WAT
96
3
HOH
HOH
96
A
WAT
102
3
HOH
HOH
102
A
WAT
103
3
HOH
HOH
103
A
WAT
106
3
HOH
HOH
106
A
WAT
110
3
HOH
HOH
110
A
WAT
112
3
HOH
HOH
112
A
WAT
119
3
HOH
HOH
119
A
WAT
120
3
HOH
HOH
120
A
WAT
132
3
HOH
HOH
132
A
WAT
134
3
HOH
HOH
134
A
WAT
147
3
HOH
HOH
147
A
WAT
149
3
HOH
HOH
149
A
WAT
155
3
HOH
HOH
155
A
WAT
159
3
HOH
HOH
159
A
WAT
180
3
HOH
HOH
180
A
WAT
181
3
HOH
HOH
181
A
WAT
185
3
HOH
HOH
185
A
WAT
186
3
HOH
HOH
186
A
WAT
191
3
HOH
HOH
191
A
WAT
192
3
HOH
HOH
192
A
WAT
195
3
HOH
HOH
195
A
WAT
203
3
HOH
HOH
203
A
WAT
204
3
HOH
HOH
204
A
WAT
205
3
HOH
HOH
205
A
WAT
212
3
HOH
HOH
212
A
WAT
220
3
HOH
HOH
220
A
WAT
223
3
HOH
HOH
223
A
WAT
229
3
HOH
HOH
229
A
WAT
237
3
HOH
HOH
237
A
WAT
242
3
HOH
HOH
242
A
WAT
244
3
HOH
HOH
244
A
WAT
245
3
HOH
HOH
245
A
WAT
15
3
HOH
HOH
15
B
WAT
21
3
HOH
HOH
21
B
WAT
29
3
HOH
HOH
29
B
WAT
35
3
HOH
HOH
35
B
WAT
39
3
HOH
HOH
39
B
WAT
41
3
HOH
HOH
41
B
WAT
42
3
HOH
HOH
42
B
WAT
43
3
HOH
HOH
43
B
WAT
50
3
HOH
HOH
50
B
WAT
53
3
HOH
HOH
53
B
WAT
56
3
HOH
HOH
56
B
WAT
61
3
HOH
HOH
61
B
WAT
64
3
HOH
HOH
64
B
WAT
72
3
HOH
HOH
72
B
WAT
74
3
HOH
HOH
74
B
WAT
76
3
HOH
HOH
76
B
WAT
78
3
HOH
HOH
78
B
WAT
83
3
HOH
HOH
83
B
WAT
84
3
HOH
HOH
84
B
WAT
89
3
HOH
HOH
89
B
WAT
104
3
HOH
HOH
104
B
WAT
107
3
HOH
HOH
107
B
WAT
124
3
HOH
HOH
124
B
WAT
125
3
HOH
HOH
125
B
WAT
127
3
HOH
HOH
127
B
WAT
139
3
HOH
HOH
139
B
WAT
141
3
HOH
HOH
141
B
WAT
143
3
HOH
HOH
143
B
WAT
144
3
HOH
HOH
144
B
WAT
150
3
HOH
HOH
150
B
WAT
154
3
HOH
HOH
154
B
WAT
160
3
HOH
HOH
160
B
WAT
169
3
HOH
HOH
169
B
WAT
176
3
HOH
HOH
176
B
WAT
177
3
HOH
HOH
177
B
WAT
178
3
HOH
HOH
178
B
WAT
206
3
HOH
HOH
206
B
WAT
211
3
HOH
HOH
211
B
WAT
213
3
HOH
HOH
213
B
WAT
214
3
HOH
HOH
214
B
WAT
217
3
HOH
HOH
217
B
WAT
218
3
HOH
HOH
218
B
WAT
224
3
HOH
HOH
224
B
WAT
230
3
HOH
HOH
230
B
WAT
232
3
HOH
HOH
232
B
WAT
234
3
HOH
HOH
234
B
WAT
235
3
HOH
HOH
235
B
WAT
238
3
HOH
HOH
238
B
WAT
243
3
HOH
HOH
243
B
WAT
246
3
HOH
HOH
246
B
CYT
602
n
1
DC
602
C
ADE
603
n
2
DA
603
C
ADE
604
n
3
DA
604
C
CYT
605
n
4
DC
605
C
CYT
606
n
5
DC
606
C
GUA
607
n
6
DG
607
C
ADE
608
n
7
DA
608
C
ADE
609
n
8
DA
609
C
THY
610
n
9
DT
610
C
THY
611
n
10
DT
611
C
CYT
612
n
11
DC
612
C
GUA
613
n
12
DG
613
C
GUA
614
n
13
DG
614
C
THY
615
n
14
DT
615
C
THY
616
n
15
DT
616
C
GUA
617
n
16
DG
617
C
CYT
902
n
1
DC
902
D
ADE
903
n
2
DA
903
D
ADE
904
n
3
DA
904
D
CYT
905
n
4
DC
905
D
CYT
906
n
5
DC
906
D
GUA
907
n
6
DG
907
D
ADE
908
n
7
DA
908
D
ADE
909
n
8
DA
909
D
THY
910
n
9
DT
910
D
THY
911
n
10
DT
911
D
CYT
912
n
11
DC
912
D
GUA
913
n
12
DG
913
D
GUA
914
n
13
DG
914
D
THY
915
n
14
DT
915
D
THY
916
n
15
DT
916
D
GUA
917
n
16
DG
917
D
n
1
283
A
n
2
284
A
n
3
285
A
MET
286
n
4
MET
286
A
THR
287
n
5
THR
287
A
PRO
288
n
6
PRO
288
A
ILE
289
n
7
ILE
289
A
ILE
290
n
8
ILE
290
A
HIS
291
n
9
HIS
291
A
LEU
292
n
10
LEU
292
A
LYS
293
n
11
LYS
293
A
GLY
294
n
12
GLY
294
A
ASP
295
n
13
ASP
295
A
ARG
296
n
14
ARG
296
A
ASN
297
n
15
ASN
297
A
SER
298
n
16
SER
298
A
LEU
299
n
17
LEU
299
A
LYS
300
n
18
LYS
300
A
CYS
301
n
19
CYS
301
A
LEU
302
n
20
LEU
302
A
ARG
303
n
21
ARG
303
A
TYR
304
n
22
TYR
304
A
ARG
305
n
23
ARG
305
A
LEU
306
n
24
LEU
306
A
ARG
307
n
25
ARG
307
A
GLY
308
n
26
LYS
308
A
GLY
309
n
27
HIS
309
A
SER
310
n
28
SER
310
A
GLY
311
n
29
ASP
311
A
HIS
312
n
30
HIS
312
A
TYR
313
n
31
TYR
313
A
ARG
314
n
32
ARG
314
A
ASP
315
n
33
ASP
315
A
ILE
316
n
34
ILE
316
A
SER
317
n
35
SER
317
A
SER
318
n
36
SER
318
A
THR
319
n
37
THR
319
A
TRP
320
n
38
TRP
320
A
HIS
321
n
39
HIS
321
A
TRP
322
n
40
TRP
322
A
THR
323
n
41
THR
323
A
n
42
324
A
n
43
325
A
n
44
326
A
n
45
327
A
n
46
328
A
ALA
329
n
47
LYS
329
A
THR
330
n
48
THR
330
A
GLY
331
n
49
GLY
331
A
ILE
332
n
50
ILE
332
A
LEU
333
n
51
LEU
333
A
THR
334
n
52
THR
334
A
VAL
335
n
53
VAL
335
A
THR
336
n
54
THR
336
A
TYR
337
n
55
TYR
337
A
HIS
338
n
56
HIS
338
A
SER
339
n
57
SER
339
A
GLU
340
n
58
GLU
340
A
THR
341
n
59
THR
341
A
GLN
342
n
60
GLN
342
A
ARG
343
n
61
ARG
343
A
GLY
344
n
62
THR
344
A
LYS
345
n
63
LYS
345
A
PHE
346
n
64
PHE
346
A
LEU
347
n
65
LEU
347
A
ASN
348
n
66
ASN
348
A
THR
349
n
67
THR
349
A
VAL
350
n
68
VAL
350
A
ALA
351
n
69
ALA
351
A
ILE
352
n
70
ILE
352
A
PRO
353
n
71
PRO
353
A
ASP
354
n
72
ASP
354
A
SER
355
n
73
SER
355
A
VAL
356
n
74
VAL
356
A
GLN
357
n
75
GLN
357
A
ILE
358
n
76
ILE
358
A
LEU
359
n
77
LEU
359
A
VAL
360
n
78
VAL
360
A
GLY
361
n
79
GLY
361
A
TYR
362
n
80
TYR
362
A
MET
363
n
81
MET
363
A
THR
364
n
82
THR
364
A
n
83
365
A
n
1
283
B
n
2
284
B
HIS
285
n
3
HIS
285
B
MET
286
n
4
MET
286
B
THR
287
n
5
THR
287
B
PRO
288
n
6
PRO
288
B
ILE
289
n
7
ILE
289
B
ILE
290
n
8
ILE
290
B
HIS
291
n
9
HIS
291
B
LEU
292
n
10
LEU
292
B
LYS
293
n
11
LYS
293
B
GLY
294
n
12
GLY
294
B
ASP
295
n
13
ASP
295
B
ARG
296
n
14
ARG
296
B
ASN
297
n
15
ASN
297
B
SER
298
n
16
SER
298
B
LEU
299
n
17
LEU
299
B
LYS
300
n
18
LYS
300
B
CYS
301
n
19
CYS
301
B
LEU
302
n
20
LEU
302
B
ARG
303
n
21
ARG
303
B
TYR
304
n
22
TYR
304
B
ARG
305
n
23
ARG
305
B
LEU
306
n
24
LEU
306
B
ARG
307
n
25
ARG
307
B
LYS
308
n
26
LYS
308
B
ALA
309
n
27
HIS
309
B
GLY
310
n
28
SER
310
B
ALA
311
n
29
ASP
311
B
ALA
312
n
30
HIS
312
B
TYR
313
n
31
TYR
313
B
ALA
314
n
32
ARG
314
B
ASP
315
n
33
ASP
315
B
ILE
316
n
34
ILE
316
B
SER
317
n
35
SER
317
B
SER
318
n
36
SER
318
B
THR
319
n
37
THR
319
B
TRP
320
n
38
TRP
320
B
HIS
321
n
39
HIS
321
B
TRP
322
n
40
TRP
322
B
THR
323
n
41
THR
323
B
n
42
324
B
n
43
325
B
n
44
326
B
n
45
327
B
ALA
328
n
46
GLU
328
B
ALA
329
n
47
LYS
329
B
THR
330
n
48
THR
330
B
GLY
331
n
49
GLY
331
B
ILE
332
n
50
ILE
332
B
LEU
333
n
51
LEU
333
B
THR
334
n
52
THR
334
B
VAL
335
n
53
VAL
335
B
THR
336
n
54
THR
336
B
TYR
337
n
55
TYR
337
B
HIS
338
n
56
HIS
338
B
SER
339
n
57
SER
339
B
GLU
340
n
58
GLU
340
B
THR
341
n
59
THR
341
B
GLN
342
n
60
GLN
342
B
ARG
343
n
61
ARG
343
B
THR
344
n
62
THR
344
B
LYS
345
n
63
LYS
345
B
PHE
346
n
64
PHE
346
B
LEU
347
n
65
LEU
347
B
ASN
348
n
66
ASN
348
B
THR
349
n
67
THR
349
B
VAL
350
n
68
VAL
350
B
GLY
351
n
69
ALA
351
B
ILE
352
n
70
ILE
352
B
PRO
353
n
71
PRO
353
B
ASP
354
n
72
ASP
354
B
SER
355
n
73
SER
355
B
VAL
356
n
74
VAL
356
B
GLN
357
n
75
GLN
357
B
ILE
358
n
76
ILE
358
B
LEU
359
n
77
LEU
359
B
VAL
360
n
78
VAL
360
B
GLY
361
n
79
GLY
361
B
TYR
362
n
80
TYR
362
B
MET
363
n
81
MET
363
B
THR
364
n
82
THR
364
B
n
83
365
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASP
315
C
O
ASP
33
A
N
THR
336
C
N
THR
54
A
N
VAL
335
C
N
VAL
53
A
O
ILE
290
C
O
ILE
8
A
N
LYS
293
C
N
LYS
11
A
O
GLN
357
C
O
GLN
75
B
O
ASP
315
D
O
ASP
33
B
N
THR
336
D
N
THR
54
B
N
VAL
335
D
N
VAL
53
B
O
ILE
290
D
O
ILE
8
B
O
LYS
293
D
O
LYS
11
B
N
GLN
357
D
N
GLN
75
1
A
CB
LYS
308
C
CB
LYS
26
1
Y
1
A
CG
LYS
308
C
CG
LYS
26
1
Y
1
A
CD
LYS
308
C
CD
LYS
26
1
Y
1
A
CE
LYS
308
C
CE
LYS
26
1
Y
1
A
NZ
LYS
308
C
NZ
LYS
26
1
Y
1
A
CB
HIS
309
C
CB
HIS
27
1
Y
1
A
CG
HIS
309
C
CG
HIS
27
1
Y
1
A
ND1
HIS
309
C
ND1
HIS
27
1
Y
1
A
CD2
HIS
309
C
CD2
HIS
27
1
Y
1
A
CE1
HIS
309
C
CE1
HIS
27
1
Y
1
A
NE2
HIS
309
C
NE2
HIS
27
1
Y
1
A
CB
ASP
311
C
CB
ASP
29
1
Y
1
A
CG
ASP
311
C
CG
ASP
29
1
Y
1
A
OD1
ASP
311
C
OD1
ASP
29
1
Y
1
A
OD2
ASP
311
C
OD2
ASP
29
1
Y
1
A
CG
LYS
329
C
CG
LYS
47
1
Y
1
A
CD
LYS
329
C
CD
LYS
47
1
Y
1
A
CE
LYS
329
C
CE
LYS
47
1
Y
1
A
NZ
LYS
329
C
NZ
LYS
47
1
Y
1
A
CB
THR
344
C
CB
THR
62
1
Y
1
A
OG1
THR
344
C
OG1
THR
62
1
Y
1
A
CG2
THR
344
C
CG2
THR
62
1
Y
1
B
CG
HIS
309
D
CG
HIS
27
1
Y
1
B
ND1
HIS
309
D
ND1
HIS
27
1
Y
1
B
CD2
HIS
309
D
CD2
HIS
27
1
Y
1
B
CE1
HIS
309
D
CE1
HIS
27
1
Y
1
B
NE2
HIS
309
D
NE2
HIS
27
1
Y
1
B
CB
SER
310
D
CB
SER
28
1
Y
1
B
OG
SER
310
D
OG
SER
28
1
Y
1
B
CG
ASP
311
D
CG
ASP
29
1
Y
1
B
OD1
ASP
311
D
OD1
ASP
29
1
Y
1
B
OD2
ASP
311
D
OD2
ASP
29
1
Y
1
B
CG
HIS
312
D
CG
HIS
30
1
Y
1
B
ND1
HIS
312
D
ND1
HIS
30
1
Y
1
B
CD2
HIS
312
D
CD2
HIS
30
1
Y
1
B
CE1
HIS
312
D
CE1
HIS
30
1
Y
1
B
NE2
HIS
312
D
NE2
HIS
30
1
Y
1
B
CG
ARG
314
D
CG
ARG
32
1
Y
1
B
CD
ARG
314
D
CD
ARG
32
1
Y
1
B
NE
ARG
314
D
NE
ARG
32
1
Y
1
B
CZ
ARG
314
D
CZ
ARG
32
1
Y
1
B
NH1
ARG
314
D
NH1
ARG
32
1
Y
1
B
NH2
ARG
314
D
NH2
ARG
32
1
Y
1
B
CG
GLU
328
D
CG
GLU
46
1
Y
1
B
CD
GLU
328
D
CD
GLU
46
1
Y
1
B
OE1
GLU
328
D
OE1
GLU
46
1
Y
1
B
OE2
GLU
328
D
OE2
GLU
46
1
Y
1
B
CG
LYS
329
D
CG
LYS
47
1
Y
1
B
CD
LYS
329
D
CD
LYS
47
1
Y
1
B
CE
LYS
329
D
CE
LYS
47
1
Y
1
B
NZ
LYS
329
D
NZ
LYS
47
1
Y
1
B
CB
ALA
351
D
CB
ALA
69
1
Y
1
A
GLY
283
C
GLY
1
1
Y
1
A
SER
284
C
SER
2
1
Y
1
A
HIS
285
C
HIS
3
1
Y
1
A
GLY
324
C
GLY
42
1
Y
1
A
ALA
325
C
ALA
43
1
Y
1
A
GLY
326
C
GLY
44
1
Y
1
A
ASN
327
C
ASN
45
1
Y
1
A
GLU
328
C
GLU
46
1
Y
1
A
MET
365
C
MET
83
1
Y
1
B
GLY
283
D
GLY
1
1
Y
1
B
SER
284
D
SER
2
1
Y
1
B
GLY
324
D
GLY
42
1
Y
1
B
ALA
325
D
ALA
43
1
Y
1
B
GLY
326
D
GLY
44
1
Y
1
B
ASN
327
D
ASN
45
1
Y
1
B
MET
365
D
MET
83
1
Y
1
C
DT
615
0.070
SIDE CHAIN
1
A
SER
310
-68.22
8.77
1
A
THR
349
-133.84
-42.77
1
B
SER
310
-66.72
5.29
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
25.4
7.85
0.00
0.00
3.14
0.00
-10.99
0.2870000
0.009
0.2100000
0.2100000
2.40
25.65
957
9277
10.3
83.3
RANDOM
374703.07
0.000000
1
RESTRAINED
THROUGHOUT
MOLECULAR REPLACEMENT
FLAT MODEL
38.3429
0.310716
0.39
0.27
5.00
0.51
0.37
2.40
25.65
190
2035
0
650
1195
0.005
1.1
21.1
1.05
0.65
1.50
1.20
2.00
0.60
2.00
0.94
2.50
0.3830000
0.029
0.3030000
2.55
171
1313
6
11.5
81.4
20.0
2.3
99
1JJ4
12652
11109
0.0790000
1
9.8
4.27
87.8
0.3790000
2.3
2.38
2.33
1107
89.2
phasing
AMoRE
refinement
CNS
1.0
data reduction
RAXCTRL
V. 6.5
data reduction
DENZO
data scaling
SCALEPACK
Human papillomavirus type 18 E2 DNA-binding domain bound to its DNA target
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
the biological assembly is a homodimer
A
ARG
296
C
ARG
14
HELX_P
A
ARG
307
C
ARG
25
1
1
12
A
LYS
308
C
LYS
26
HELX_P
A
TYR
313
C
TYR
31
5
2
6
A
SER
339
C
SER
57
HELX_P
A
ASN
348
C
ASN
66
1
3
10
B
ASP
295
D
ASP
13
HELX_P
B
ARG
307
D
ARG
25
1
4
13
B
LYS
308
D
LYS
26
HELX_P
B
TYR
313
D
TYR
31
5
5
6
B
SER
339
D
SER
57
HELX_P
B
VAL
350
D
VAL
68
1
6
12
hydrog
WATSON-CRICK
C
DC
602
A
N3
DC
1
1_555
D
DG
917
B
N1
DG
16
1_555
hydrog
WATSON-CRICK
C
DC
602
A
N4
DC
1
1_555
D
DG
917
B
O6
DG
16
1_555
hydrog
WATSON-CRICK
C
DC
602
A
O2
DC
1
1_555
D
DG
917
B
N2
DG
16
1_555
hydrog
WATSON-CRICK
C
DA
603
A
N1
DA
2
1_555
D
DT
916
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
C
DA
603
A
N6
DA
2
1_555
D
DT
916
B
O4
DT
15
1_555
hydrog
WATSON-CRICK
C
DA
604
A
N1
DA
3
1_555
D
DT
915
B
N3
DT
14
1_555
hydrog
WATSON-CRICK
C
DA
604
A
N6
DA
3
1_555
D
DT
915
B
O4
DT
14
1_555
hydrog
WATSON-CRICK
C
DC
605
A
N3
DC
4
1_555
D
DG
914
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
605
A
N4
DC
4
1_555
D
DG
914
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
605
A
O2
DC
4
1_555
D
DG
914
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
606
A
N3
DC
5
1_555
D
DG
913
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
C
DC
606
A
N4
DC
5
1_555
D
DG
913
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
C
DC
606
A
O2
DC
5
1_555
D
DG
913
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
C
DG
607
A
N1
DG
6
1_555
D
DC
912
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
607
A
N2
DG
6
1_555
D
DC
912
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
607
A
O6
DG
6
1_555
D
DC
912
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
C
DA
608
A
N1
DA
7
1_555
D
DT
911
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
C
DA
608
A
N6
DA
7
1_555
D
DT
911
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
C
DA
609
A
N1
DA
8
1_555
D
DT
910
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
609
A
N6
DA
8
1_555
D
DT
910
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
C
DT
610
A
N3
DT
9
1_555
D
DA
909
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
C
DT
610
A
O4
DT
9
1_555
D
DA
909
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
C
DT
611
A
N3
DT
10
1_555
D
DA
908
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
C
DT
611
A
O4
DT
10
1_555
D
DA
908
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
C
DC
612
A
N3
DC
11
1_555
D
DG
907
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
612
A
N4
DC
11
1_555
D
DG
907
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
612
A
O2
DC
11
1_555
D
DG
907
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
C
DG
613
A
N1
DG
12
1_555
D
DC
906
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
613
A
N2
DG
12
1_555
D
DC
906
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
613
A
O6
DG
12
1_555
D
DC
906
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
614
A
N1
DG
13
1_555
D
DC
905
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
614
A
N2
DG
13
1_555
D
DC
905
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
614
A
O6
DG
13
1_555
D
DC
905
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
C
DT
615
A
N3
DT
14
1_555
D
DA
904
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
615
A
O4
DT
14
1_555
D
DA
904
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
616
A
N3
DT
15
1_555
D
DA
903
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
616
A
O4
DT
15
1_555
D
DA
903
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
C
DG
617
A
N1
DG
16
1_555
D
DC
902
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
617
A
N2
DG
16
1_555
D
DC
902
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
617
A
O6
DG
16
1_555
D
DC
902
B
N4
DC
1
1_555
TRANSCRIPTION/DNA
HPV-18, E2, DNA-binding domain, E2-DNA complex, TRANSCRIPTION-DNA COMPLEX
VE2_HPV18
UNP
2
287
P06790
TPIIHLKGDRNSLKCLRYRLRKHSDHYRDISSTWHWTGAGNEKTGILTVTYHSETQRTKFLNTVAIPDSVQILVGYMTM
1JJ4
PDB
1
1JJ4
287
365
1JJ4
287
365
P06790
A
1
5
83
287
365
1JJ4
287
365
P06790
B
1
5
83
602
617
1JJ4
602
617
1JJ4
C
2
1
16
902
917
1JJ4
902
917
1JJ4
D
2
1
16
1
cloning artifact
GLY
283
1JJ4
A
P06790
UNP
1
1
cloning artifact
SER
284
1JJ4
A
P06790
UNP
2
1
cloning artifact
HIS
285
1JJ4
A
P06790
UNP
3
1
cloning artifact
MET
286
1JJ4
A
P06790
UNP
4
2
cloning artifact
GLY
283
1JJ4
B
P06790
UNP
1
2
cloning artifact
SER
284
1JJ4
B
P06790
UNP
2
2
cloning artifact
HIS
285
1JJ4
B
P06790
UNP
3
2
cloning artifact
MET
286
1JJ4
B
P06790
UNP
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
315
C
ASP
33
A
ILE
316
C
ILE
34
A
THR
330
C
THR
48
A
THR
336
C
THR
54
A
THR
287
C
THR
5
A
ASP
295
C
ASP
13
A
GLN
357
C
GLN
75
A
MET
363
C
MET
81
B
ASP
315
D
ASP
33
B
ILE
316
D
ILE
34
B
GLY
331
D
GLY
49
B
THR
336
D
THR
54
B
THR
287
D
THR
5
B
GLY
294
D
GLY
12
B
GLN
357
D
GLN
75
B
MET
363
D
MET
81
20
C 2 2 21