0.015077 0.000000 0.000000 0.000000 0.014557 0.000000 0.000000 0.000000 0.016094 0.00000 0.00000 0.00000 Chiu, T.K. Sohn, C. Johnson, R.C. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 66.328 68.693 62.136 C9 H12 I N2 O8 P 434.078 n 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N O N 8 N O N 9 N I N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C N 52 N C N 53 N C N 54 N N N 55 N C N 56 N N N 57 N N N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N N N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N O N 92 N P N 93 N O N 94 N O N 95 N O N 96 N C N 97 R C N 98 N O N 99 S C N 100 N O N 101 N C N 102 R C Y 103 N N Y 104 N C Y 105 N N Y 106 N C Y 107 N C N 108 N N Y 109 N N Y 110 N C Y 111 N N Y 112 N C N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N O N 128 N P N 129 N O N 130 N O N 131 N O N 132 N C N 133 R C N 134 N O N 135 S C N 136 N O N 137 N C N 138 R C N 139 N N N 140 N C N 141 N O N 142 N N N 143 N C N 144 N N N 145 N C N 146 N C N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N O N 162 N P N 163 N O N 164 N O N 165 N O N 166 N C N 167 R C N 168 N O N 169 S C N 170 N O N 171 N C N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N O N 199 N P N 200 N O N 201 N O N 202 N O N 203 N C N 204 R C N 205 N O N 206 S C N 207 N O N 208 N C N 209 R C N 210 N N N 211 N C N 212 N O N 213 N N N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N O N 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N O N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 N C N 275 N C N 276 N O N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C Y 288 N C Y 289 N N Y 290 N C Y 291 N C Y 292 N N N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N O N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 S C N 312 N C N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C N 334 N C N 335 N C N 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N C N 359 N N N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N S N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N C N 425 N C N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N N N 437 S C N 438 N C N 439 N O N 440 N C N 441 N O N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 R C N 455 N O N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N N N 468 S C N 469 N C N 470 N O N 471 N C Y 472 N C Y 473 N C Y 474 N C Y 475 N C Y 476 N C Y 477 N C N 478 N O N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N N N 492 S C N 493 N C N 494 N O N 495 N C N 496 N C N 497 N C N 498 N O N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing Y 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N doub N 121 N sing N 122 N sing Y 123 N sing Y 124 N doub N 125 N sing Y 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N sing Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N doub N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing Y 295 N sing Y 296 N doub Y 297 N doub N 298 N sing Y 299 N sing N 300 N sing Y 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N doub N 468 N sing N 469 N sing N 470 N sing N 471 N sing Y 472 N doub Y 473 N sing Y 474 N sing N 475 N sing Y 476 N doub N 477 N sing Y 478 N doub N 479 N sing Y 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N doub N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing UK EMBO J. EMJODG 0897 0261-4189 21 801 814 10.1093/emboj/21.4.801 11847127 Testing water-mediated DNA recognition by the Hin recombinase. 2002 Thesis 145 241 How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase. 2001 US Science SCIEAS 0038 0036-8075 263 348 355 8278807 Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions. 1994 10.2210/pdb1jj8/pdb pdb_00001jj8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE 1995-09-01 RIGAKU SINGLE WAVELENGTH M x-ray 1 1.543 1.0 1.543 ROTATING ANODE 4436.707 5'-D(*TP*GP*(5IT)P*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3' 1 syn polymer 4231.806 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3' 1 syn polymer 6047.051 DNA-INVERTASE HIN RESIDUES 139 TO 190 1 syn polymer 18.015 water 12 nat water Hin Recombinase no yes (DT)(DG)(5IU)(DT)(DT)(DT)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA) TGUTTTTGATAAGA A polydeoxyribonucleotide no no (DA)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DA)(DA)(DA)(DA)(DC) ATCTTATCAAAAAC B polydeoxyribonucleotide no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.423 47.27 VAPOR DIFFUSION, HANGING DROP 4.60 0.08 MM DNA, 0.04 MM HIN, 25 MM NA ACETATE (PH 4.6), 25 MM MGCL2, 8 MM NACL, 6.3% V/V PEG400, AND 1.25 MM NA CACODYLATE. RESERVOIR SOLUTION CONTAINS 100 MM NA ACETATE (PH 4.6), 100 MM MGCL2, AND 25% PEG400. CONCENTRATION OF PEG400 IN RESERVOIR SOLUTION WAS INCREASED IN 5% INCREMENTS TO 35%. CONDITIONS FOR NATIVE ARE THE SAME EXCEPT THE CONCENTRATION OF MGCL2 IS 5 TIMES SMALLER., pH 4.60, VAPOR DIFFUSION, HANGING DROP DNA 1 HIN 1 sodium acetate 1 MgCl2 1 NaCl 1 PEG 400 1 sodium cacodylate 1 sodium acetate 2 MgCl2 2 PEG 400 2 -14.683 1 19 A 3 B 29 2.557 A_DG3:DC29_B 1 -9.559 0.297 -0.500 -0.109 -3.727 1 20 A 4 B 28 -6.744 A_5IU4:DA28_B 2 -0.701 0.725 -0.128 0.123 -7.007 1 20 A 5 B 27 1.218 A_DT5:DA27_B 3 -11.966 -0.175 -0.010 -0.278 -2.100 1 20 A 6 B 26 0.544 A_DT6:DA26_B 4 -23.330 -0.062 -0.130 -0.085 -11.183 1 20 A 7 B 25 -9.120 A_DT7:DA25_B 5 -14.275 -0.139 -0.057 -0.298 -7.404 1 20 A 8 B 24 -5.587 A_DT8:DA24_B 6 -17.312 0.217 -0.137 -0.070 -6.581 1 19 A 9 B 23 0.284 A_DG9:DC23_B 7 -5.072 -0.359 -0.486 -0.354 5.705 1 20 A 10 B 22 -2.913 A_DA10:DT22_B 8 -14.048 0.118 -0.050 -0.262 7.273 1 20 A 11 B 21 0.573 A_DT11:DA21_B 9 -11.070 0.238 -0.067 -0.209 -3.703 1 20 A 12 B 20 -2.907 A_DA12:DT20_B 10 -15.375 0.097 -0.223 -0.227 5.019 1 20 A 13 B 19 6.340 A_DA13:DT19_B 11 -12.572 0.018 0.272 0.001 5.209 1 19 A 14 B 18 5.982 A_DG14:DC18_B 12 -19.653 0.122 -0.019 0.271 3.156 35.498 A A 3 4 -2.262 B B 29 28 3.123 -1.379 -0.626 -1.007 AA_DG35IU4:DA28DC29_BB 1 0.186 -0.306 35.471 -1.458 1.053 3.167 30.280 A A 4 5 2.528 B B 28 27 3.231 1.318 -0.258 -0.567 AA_5IU4DT5:DA27DA28_BB 2 2.811 -5.390 30.124 -1.346 1.051 3.126 34.351 A A 5 6 6.759 B B 27 26 3.159 3.979 -0.054 0.010 AA_DT5DT6:DA26DA27_BB 3 2.762 -4.692 34.018 -0.585 0.509 3.518 37.419 A A 6 7 -1.093 B B 26 25 3.515 -0.701 0.177 -0.015 AA_DT6DT7:DA25DA26_BB 4 0.643 -1.002 37.408 0.076 -0.185 3.145 34.828 A A 7 8 0.698 B B 25 24 3.127 0.418 -0.686 -0.484 AA_DT7DT8:DA24DA25_BB 5 -1.362 2.276 34.800 -0.870 0.948 3.563 34.235 A A 8 9 6.156 B B 24 23 3.391 3.613 0.976 1.173 AA_DT8DG9:DC23DA24_BB 6 2.954 -5.034 33.925 1.386 -1.161 3.270 39.144 A A 9 10 1.196 B B 23 22 3.089 0.796 -1.116 0.992 AA_DG9DA10:DT22DC23_BB 7 -8.281 12.448 38.284 1.387 0.689 3.202 29.793 A A 10 11 5.503 B B 22 21 3.277 2.824 0.254 -0.752 AA_DA10DT11:DA21DT22_BB 8 1.619 -3.155 29.619 -2.049 -0.159 3.742 39.654 A A 11 12 7.382 B B 21 20 3.654 4.993 -0.564 0.763 AA_DT11DA12:DT20DA21_BB 9 -1.928 2.850 39.305 0.463 0.576 2.909 34.883 A A 12 13 -3.885 B B 20 19 2.936 -2.326 0.371 -0.062 AA_DA12DA13:DT19DT20_BB 10 -1.957 3.269 34.754 0.212 -0.884 3.210 34.194 A A 13 14 11.455 B B 19 18 3.346 6.691 -0.117 -0.332 AA_DA13DG14:DC18DT19_BB 11 1.887 -3.231 33.501 -1.635 0.500 chem_comp_atom chem_comp_bond database_2 struct_conn pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Other Data collection Database references Derived calculations Refinement description 1 0 2002-02-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2015-02-04 1 4 2024-02-07 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag Native wild-type Hin recombinase DNA-binding domain bound to underivatized hixL half-site. FORM1 BR18 DERIVATIVE FORM1 I5 DERIVATIVE FORM1 A10G MUTANT FORM1 T11G MUTANT FORM1 G9T MUTANT FORM1 T11C MUTANT RCSB Y RCSB 2001-07-03 REL REL HOH water SYNTHETIC PEPTIDE sample SIRAS PHASES Other experimental model HOH 205 4 HOH HOH 205 A HOH 206 4 HOH HOH 206 A HOH 204 4 HOH HOH 204 B HOH 207 4 HOH HOH 207 B HOH 208 4 HOH HOH 208 B HOH 210 4 HOH HOH 210 B HOH 211 4 HOH HOH 211 B HOH 212 4 HOH HOH 212 B HOH 201 4 HOH HOH 201 C HOH 202 4 HOH HOH 202 C HOH 203 4 HOH HOH 203 C HOH 209 4 HOH HOH 209 C T 2 n 1 DT 2 A G 3 n 2 DG 3 A U 4 n 3 5IU 4 A T 5 n 4 DT 5 A T 6 n 5 DT 6 A T 7 n 6 DT 7 A T 8 n 7 DT 8 A G 9 n 8 DG 9 A A 10 n 9 DA 10 A T 11 n 10 DT 11 A A 12 n 11 DA 12 A A 13 n 12 DA 13 A G 14 n 13 DG 14 A A 15 n 14 DA 15 A A 16 n 1 DA 16 B T 17 n 2 DT 17 B C 18 n 3 DC 18 B T 19 n 4 DT 19 B T 20 n 5 DT 20 B A 21 n 6 DA 21 B T 22 n 7 DT 22 B C 23 n 8 DC 23 B A 24 n 9 DA 24 B A 25 n 10 DA 25 B A 26 n 11 DA 26 B A 27 n 12 DA 27 B A 28 n 13 DA 28 B C 29 n 14 DC 29 B GLY 139 n 1 GLY 139 C ARG 140 n 2 ARG 140 C PRO 141 n 3 PRO 141 C ARG 142 n 4 ARG 142 C ALA 143 n 5 ALA 143 C ILE 144 n 6 ILE 144 C ASN 145 n 7 ASN 145 C LYS 146 n 8 LYS 146 C HIS 147 n 9 HIS 147 C GLU 148 n 10 GLU 148 C GLN 149 n 11 GLN 149 C GLU 150 n 12 GLU 150 C GLN 151 n 13 GLN 151 C ILE 152 n 14 ILE 152 C SER 153 n 15 SER 153 C ARG 154 n 16 ARG 154 C LEU 155 n 17 LEU 155 C LEU 156 n 18 LEU 156 C GLU 157 n 19 GLU 157 C LYS 158 n 20 LYS 158 C GLY 159 n 21 GLY 159 C HIS 160 n 22 HIS 160 C PRO 161 n 23 PRO 161 C ARG 162 n 24 ARG 162 C GLN 163 n 25 GLN 163 C GLN 164 n 26 GLN 164 C LEU 165 n 27 LEU 165 C ALA 166 n 28 ALA 166 C ILE 167 n 29 ILE 167 C ILE 168 n 30 ILE 168 C PHE 169 n 31 PHE 169 C GLY 170 n 32 GLY 170 C ILE 171 n 33 ILE 171 C GLY 172 n 34 GLY 172 C VAL 173 n 35 VAL 173 C SER 174 n 36 SER 174 C THR 175 n 37 THR 175 C LEU 176 n 38 LEU 176 C TYR 177 n 39 TYR 177 C ARG 178 n 40 ARG 178 C TYR 179 n 41 TYR 179 C PHE 180 n 42 PHE 180 C PRO 181 n 43 PRO 181 C ALA 182 n 44 ALA 182 C SER 183 n 45 SER 183 C SER 184 n 46 SER 184 C ILE 185 n 47 ILE 185 C LYS 186 n 48 LYS 186 C LYS 187 n 49 LYS 187 C n 50 188 C n 51 189 C n 52 190 C author_defined_assembly 3 trimeric A 5IU 4 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE A 5IU 3 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B HOH 212 E HOH 1 A C4' DA 15 A C4' DA 14 1 Y 1 A O4' DA 15 A O4' DA 14 1 Y 1 A C3' DA 15 A C3' DA 14 1 Y 1 A O3' DA 15 A O3' DA 14 1 Y 1 A C2' DA 15 A C2' DA 14 1 Y 1 A C1' DA 15 A C1' DA 14 1 Y 1 A N9 DA 15 A N9 DA 14 1 Y 1 A C8 DA 15 A C8 DA 14 1 Y 1 A N7 DA 15 A N7 DA 14 1 Y 1 A C5 DA 15 A C5 DA 14 1 Y 1 A C6 DA 15 A C6 DA 14 1 Y 1 A N6 DA 15 A N6 DA 14 1 Y 1 A N1 DA 15 A N1 DA 14 1 Y 1 A C2 DA 15 A C2 DA 14 1 Y 1 A N3 DA 15 A N3 DA 14 1 Y 1 A C4 DA 15 A C4 DA 14 1 Y 1 C CB LYS 146 C CB LYS 8 1 Y 1 C CG LYS 146 C CG LYS 8 1 Y 1 C CD LYS 146 C CD LYS 8 1 Y 1 C CE LYS 146 C CE LYS 8 1 Y 1 C NZ LYS 146 C NZ LYS 8 1 Y 1 C CG GLU 150 C CG GLU 12 1 Y 1 C CD GLU 150 C CD GLU 12 1 Y 1 C OE1 GLU 150 C OE1 GLU 12 1 Y 1 C OE2 GLU 150 C OE2 GLU 12 1 Y 1 C CD ARG 154 C CD ARG 16 1 Y 1 C NE ARG 154 C NE ARG 16 1 Y 1 C CZ ARG 154 C CZ ARG 16 1 Y 1 C NH1 ARG 154 C NH1 ARG 16 1 Y 1 C NH2 ARG 154 C NH2 ARG 16 1 Y 1 C CG LYS 158 C CG LYS 20 1 Y 1 C CD LYS 158 C CD LYS 20 1 Y 1 C CE LYS 158 C CE LYS 20 1 Y 1 C NZ LYS 158 C NZ LYS 20 1 Y 1 C CB LYS 187 C CB LYS 49 1 Y 1 C CG LYS 187 C CG LYS 49 1 Y 1 C CD LYS 187 C CD LYS 49 1 Y 1 C CE LYS 187 C CE LYS 49 1 Y 1 C NZ LYS 187 C NZ LYS 49 1 Y 1 C ARG 188 C ARG 50 1 Y 1 C MET 189 C MET 51 1 Y 1 C ASN 190 C ASN 52 1 Y 1 B DA 25 0.064 SIDE CHAIN 1 B DA 28 0.075 SIDE CHAIN 1 A A O3' P 5IU DT 4 5 1.81 1 -12.67 1.90 104.00 91.33 A A A O3' P O5' 5IU DT DT 4 5 5 Y 1 9.57 1.20 110.70 120.27 A A A O5' P OP2 DT DT DT 5 5 5 N 1 1.86 0.30 108.30 110.16 B B B O4' C1' N9 DA DA DA 28 28 28 N 1 A A O3' P 5IU DT 4 5 0.202 0.012 1.607 1.809 Y 1 C GLU 157 -103.47 63.58 1 C LYS 158 -169.06 -1.92 1 C LYS 186 -53.33 -5.15 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP 45.00 9.450 0.00000 0.00000 -5.107 0.00000 -4.343 0.2771 0.2134 0.2134 2.75 25.00 369 3765 9.46 96.49 RANDOM 10000.00 1 ANISOTROPIC_FIXED_ISOTROPIC 0.000 SIRAS SIRAS PHASES MLF 18.88 0.28 0.46 0.36 5.00 0.60 0.53 2.75 25.00 12 939 0 552 375 0.009 1.30 19.41 1.45 1.49 1.50 2.45 2.00 2.32 2.00 3.63 2.05 0.5136 0.3529 2.87 45 394 8 9.39 91.64 44.00 2.75 25.0 1JJ8 3765 1.000 0.081 1 19.6 15.000 96.49 2.75 2.87 4.5 0.267 1 4.2 91.64 phasing SOLVE refinement CNS data reduction DENZO data scaling SCALEPACK Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N C ASN 145 C ASN 7 HELX_P C GLU 157 C GLU 19 1 1 13 C PRO 161 C PRO 23 HELX_P C GLY 170 C GLY 32 1 2 10 C GLY 172 C GLY 34 HELX_P C PHE 180 C PHE 42 1 3 9 C PRO 181 C PRO 43 HELX_P C ILE 185 C ILE 47 5 4 5 covale 1.616 both A DG 3 A O3' DG 2 1_555 A 5IU 4 A P 5IU 3 1_555 covale 1.809 both A 5IU 4 A O3' 5IU 3 1_555 A DT 5 A P DT 4 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 2 1_555 B DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 2 1_555 B DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 2 1_555 B DC 29 B N4 DC 14 1_555 hydrog WATSON-CRICK A 5IU 4 A N3 5IU 3 1_555 B DA 28 B N1 DA 13 1_555 hydrog WATSON-CRICK A 5IU 4 A O4 5IU 3 1_555 B DA 28 B N6 DA 13 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 4 1_555 B DA 27 B N1 DA 12 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 4 1_555 B DA 27 B N6 DA 12 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 5 1_555 B DA 26 B N1 DA 11 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 5 1_555 B DA 26 B N6 DA 11 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 6 1_555 B DA 25 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 6 1_555 B DA 25 B N6 DA 10 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 7 1_555 B DA 24 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 7 1_555 B DA 24 B N6 DA 9 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 8 1_555 B DC 23 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 8 1_555 B DC 23 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 8 1_555 B DC 23 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 9 1_555 B DT 22 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 9 1_555 B DT 22 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 10 1_555 B DA 21 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 10 1_555 B DA 21 B N6 DA 6 1_555 hydrog WATSON-CRICK A DA 12 A N1 DA 11 1_555 B DT 20 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 12 A N6 DA 11 1_555 B DT 20 B O4 DT 5 1_555 hydrog WATSON-CRICK A DA 13 A N1 DA 12 1_555 B DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 13 A N6 DA 12 1_555 B DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK A DG 14 A N1 DG 13 1_555 B DC 18 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A N2 DG 13 1_555 B DC 18 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A O6 DG 13 1_555 B DC 18 B N4 DC 3 1_555 DNA BINDING PROTEIN/DNA WATER-MEDIATED RECOGNITION, PROTEIN-DNA COMPLEX, HIN RECOMBINASE, I4 FORM 2, DNA BINDING PROTEIN-DNA COMPLEX HIN_SALTY UNP 3 139 P03013 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN 1JJ8 PDB 1 1JJ8 1JJ8 PDB 2 1JJ8 139 190 1JJ8 139 190 P03013 C 1 1 52 2 15 1JJ8 2 15 1JJ8 A 2 1 14 16 29 1JJ8 16 29 1JJ8 B 3 1 14 20 C 2 2 21