0.016388 0.000000 0.000000 0.000000 0.014445 0.000000 0.000000 0.000000 0.011303 0.00000 0.00000 0.00000 Brandstetter, H. Grams, F. Glitz, D. Lang, A. Huber, R. Bode, W. Krell, H.-W. Engh, R.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.0 90.0 90.0 61.02 69.23 88.47 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C17 H21 N3 O4 331.366 2-HYDROXY-5-[4-(2-HYDROXY-ETHYL)-PIPERIDIN-1-YL]-5-PHENYL-1H-PYRIMIDINE-4,6-DIONE non-polymer Ca 2 40.078 CALCIUM ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 N C N 76 N O N 77 N N N 78 N C N 79 N O N 80 R C N 81 N C N 82 N O N 83 N N N 84 N C N 85 N C N 86 N C N 87 N C N 88 N C N 89 N C N 90 N C N 91 N O Y 92 N C Y 93 N C Y 94 N C Y 95 N C Y 96 N C Y 97 N C N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N CA N 120 N N N 121 S C N 122 N C N 123 N O N 124 N C N 125 N C N 126 N C N 127 N O N 128 N N N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N O N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 N C N 161 N C N 162 N O N 163 N O N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C Y 174 N C Y 175 N N Y 176 N C Y 177 N C Y 178 N N N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N O N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 S C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N C N 245 N N N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N N N 263 S C N 264 N C N 265 N O N 266 N C N 267 N C N 268 N S N 269 N C N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N O N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 R C N 341 N O N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N N Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C N 391 N O N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C N 409 N C N 410 N C N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N doub Y 107 N sing Y 108 N sing N 109 N sing Y 110 N doub N 111 N sing Y 112 N doub N 113 N sing Y 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing Y 174 N sing Y 175 N doub Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing Y 282 N doub Y 283 N sing Y 284 N sing N 285 N sing Y 286 N doub N 287 N sing Y 288 N doub N 289 N sing Y 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N doub Y 356 N sing Y 357 N sing N 358 N sing Y 359 N sing Y 360 N doub N 361 N sing Y 362 N doub N 363 N sing Y 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing Y 379 N doub Y 380 N sing Y 381 N sing N 382 N sing Y 383 N doub N 384 N sing Y 385 N doub N 386 N sing Y 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 276 17405 17412 10.1074/jbc.M007475200 11278347 The 1.8-A crystal structure of a matrix metalloproteinase 8-barbiturate inhibitor complex reveals a previously unobserved mechanism for collagenase substrate recognition. 2001 10.2210/pdb1jj9/pdb pdb_00001jj9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 275 1 monochromator AREA DETECTOR 1996-06-27 XENTRONICS graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 18111.744 Matrix Metalloproteinase 8 3.4.24.34 catalytic domain 1 man polymer 40.078 CALCIUM ION 2 syn non-polymer 65.409 ZINC ION 2 syn non-polymer 331.366 2-HYDROXY-5-[4-(2-HYDROXY-ETHYL)-PIPERIDIN-1-YL]-5-PHENYL-1H-PYRIMIDINE-4,6-DIONE 1 syn non-polymer 18.015 water 185 nat water NEUTROPHIL COLLAGENASE no no MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGI LAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQA IYG MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGI LAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQA IYG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample 9606 Homo sapiens 511693 Escherichia coli BL21 BL21 PLASMID pET 1 2.58 52.29 VAPOR DIFFUSION 6.0 PEG6000, 10mM CaCl2, 100mM NaCl, Cacodylate pH6.0, VAPOR DIFFUSION, temperature 291K 291 pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues struct_conn struct_site repository Initial release Version format compliance Version format compliance Advisory Refinement description Advisory Data collection Database references Derived calculations 1 0 2001-08-01 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-03-13 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2001-07-04 REL REL CA CALCIUM ION ZN ZINC ION BBT 2-HYDROXY-5-[4-(2-HYDROXY-ETHYL)-PIPERIDIN-1-YL]-5-PHENYL-1H-PYRIMIDINE-4,6-DIONE HOH water KAL 996 2 CA CA 996 A KAL 997 2 CA CA 997 A ZNC 998 3 ZN ZN 998 A ZNC 999 3 ZN ZN 999 A BAR 1 4 BBT BBT 1000 A H2O 500 5 HOH HOH 500 A H2O 501 5 HOH HOH 501 A H2O 502 5 HOH HOH 502 A H2O 503 5 HOH HOH 503 A H2O 504 5 HOH HOH 504 A H2O 505 5 HOH HOH 505 A H2O 506 5 HOH HOH 506 A H2O 507 5 HOH HOH 507 A H2O 508 5 HOH HOH 508 A H2O 509 5 HOH HOH 509 A H2O 510 5 HOH HOH 510 A H2O 511 5 HOH HOH 511 A H2O 512 5 HOH HOH 512 A H2O 513 5 HOH HOH 513 A H2O 514 5 HOH HOH 514 A H2O 515 5 HOH HOH 515 A H2O 516 5 HOH HOH 516 A H2O 517 5 HOH HOH 517 A H2O 518 5 HOH HOH 518 A H2O 519 5 HOH HOH 519 A H2O 520 5 HOH HOH 520 A H2O 521 5 HOH HOH 521 A H2O 522 5 HOH HOH 522 A H2O 523 5 HOH HOH 523 A H2O 524 5 HOH HOH 524 A H2O 525 5 HOH HOH 525 A H2O 526 5 HOH HOH 526 A H2O 527 5 HOH HOH 527 A H2O 528 5 HOH HOH 528 A H2O 529 5 HOH HOH 529 A H2O 530 5 HOH HOH 530 A H2O 531 5 HOH HOH 531 A H2O 532 5 HOH HOH 532 A H2O 533 5 HOH HOH 533 A H2O 534 5 HOH HOH 534 A H2O 535 5 HOH HOH 535 A H2O 536 5 HOH HOH 536 A H2O 537 5 HOH HOH 537 A H2O 538 5 HOH HOH 538 A H2O 539 5 HOH HOH 539 A H2O 540 5 HOH HOH 540 A H2O 541 5 HOH HOH 541 A H2O 542 5 HOH HOH 542 A H2O 543 5 HOH HOH 543 A H2O 544 5 HOH HOH 544 A H2O 545 5 HOH HOH 545 A H2O 546 5 HOH HOH 546 A H2O 547 5 HOH HOH 547 A H2O 548 5 HOH HOH 548 A H2O 549 5 HOH HOH 549 A H2O 550 5 HOH HOH 550 A H2O 551 5 HOH HOH 551 A H2O 552 5 HOH HOH 552 A H2O 553 5 HOH HOH 553 A H2O 554 5 HOH HOH 554 A H2O 555 5 HOH HOH 555 A H2O 556 5 HOH HOH 556 A H2O 557 5 HOH HOH 557 A H2O 558 5 HOH HOH 558 A H2O 559 5 HOH HOH 559 A H2O 560 5 HOH HOH 560 A H2O 561 5 HOH HOH 561 A H2O 562 5 HOH HOH 562 A H2O 563 5 HOH HOH 563 A H2O 564 5 HOH HOH 564 A H2O 565 5 HOH HOH 565 A H2O 566 5 HOH HOH 566 A H2O 567 5 HOH HOH 567 A H2O 568 5 HOH HOH 568 A H2O 569 5 HOH HOH 569 A H2O 570 5 HOH HOH 570 A H2O 571 5 HOH HOH 571 A H2O 572 5 HOH HOH 572 A H2O 573 5 HOH HOH 573 A H2O 574 5 HOH HOH 574 A H2O 575 5 HOH HOH 575 A H2O 576 5 HOH HOH 576 A H2O 577 5 HOH HOH 577 A H2O 578 5 HOH HOH 578 A H2O 579 5 HOH HOH 579 A H2O 580 5 HOH HOH 580 A H2O 581 5 HOH HOH 581 A H2O 582 5 HOH HOH 582 A H2O 583 5 HOH HOH 583 A H2O 584 5 HOH HOH 584 A H2O 585 5 HOH HOH 585 A H2O 586 5 HOH HOH 586 A H2O 587 5 HOH HOH 587 A H2O 588 5 HOH HOH 588 A H2O 589 5 HOH HOH 589 A H2O 590 5 HOH HOH 590 A H2O 591 5 HOH HOH 591 A H2O 592 5 HOH HOH 592 A H2O 593 5 HOH HOH 593 A H2O 594 5 HOH HOH 594 A H2O 595 5 HOH HOH 595 A H2O 596 5 HOH HOH 596 A H2O 597 5 HOH HOH 597 A H2O 598 5 HOH HOH 598 A H2O 599 5 HOH HOH 599 A H2O 600 5 HOH HOH 600 A H2O 601 5 HOH HOH 601 A H2O 602 5 HOH HOH 602 A H2O 603 5 HOH HOH 603 A H2O 604 5 HOH HOH 604 A H2O 605 5 HOH HOH 605 A H2O 606 5 HOH HOH 606 A H2O 607 5 HOH HOH 607 A H2O 608 5 HOH HOH 608 A H2O 609 5 HOH HOH 609 A H2O 610 5 HOH HOH 610 A H2O 611 5 HOH HOH 611 A H2O 612 5 HOH HOH 612 A H2O 613 5 HOH HOH 613 A H2O 614 5 HOH HOH 614 A H2O 615 5 HOH HOH 615 A H2O 616 5 HOH HOH 616 A H2O 617 5 HOH HOH 617 A H2O 618 5 HOH HOH 618 A H2O 619 5 HOH HOH 619 A H2O 620 5 HOH HOH 620 A H2O 621 5 HOH HOH 621 A H2O 622 5 HOH HOH 622 A H2O 623 5 HOH HOH 623 A H2O 624 5 HOH HOH 624 A H2O 625 5 HOH HOH 625 A H2O 626 5 HOH HOH 626 A H2O 627 5 HOH HOH 627 A H2O 628 5 HOH HOH 628 A H2O 629 5 HOH HOH 629 A H2O 630 5 HOH HOH 630 A H2O 631 5 HOH HOH 631 A H2O 632 5 HOH HOH 632 A H2O 633 5 HOH HOH 633 A H2O 634 5 HOH HOH 634 A H2O 635 5 HOH HOH 635 A H2O 636 5 HOH HOH 636 A H2O 637 5 HOH HOH 637 A H2O 638 5 HOH HOH 638 A H2O 639 5 HOH HOH 639 A H2O 640 5 HOH HOH 640 A H2O 641 5 HOH HOH 641 A H2O 642 5 HOH HOH 642 A H2O 643 5 HOH HOH 643 A H2O 644 5 HOH HOH 644 A H2O 645 5 HOH HOH 645 A H2O 646 5 HOH HOH 646 A H2O 647 5 HOH HOH 647 A H2O 648 5 HOH HOH 648 A H2O 649 5 HOH HOH 649 A H2O 650 5 HOH HOH 650 A H2O 651 5 HOH HOH 651 A H2O 652 5 HOH HOH 652 A H2O 653 5 HOH HOH 653 A H2O 654 5 HOH HOH 654 A H2O 655 5 HOH HOH 655 A H2O 656 5 HOH HOH 656 A H2O 657 5 HOH HOH 657 A H2O 658 5 HOH HOH 658 A H2O 659 5 HOH HOH 659 A H2O 660 5 HOH HOH 660 A H2O 661 5 HOH HOH 661 A H2O 662 5 HOH HOH 662 A H2O 663 5 HOH HOH 663 A H2O 664 5 HOH HOH 664 A H2O 665 5 HOH HOH 665 A H2O 666 5 HOH HOH 666 A H2O 667 5 HOH HOH 667 A H2O 668 5 HOH HOH 668 A H2O 669 5 HOH HOH 669 A H2O 670 5 HOH HOH 670 A H2O 671 5 HOH HOH 671 A H2O 672 5 HOH HOH 672 A H2O 673 5 HOH HOH 673 A H2O 674 5 HOH HOH 674 A H2O 675 5 HOH HOH 675 A H2O 676 5 HOH HOH 676 A H2O 677 5 HOH HOH 677 A H2O 678 5 HOH HOH 678 A H2O 679 5 HOH HOH 679 A H2O 680 5 HOH HOH 680 A H2O 681 5 HOH HOH 681 A H2O 682 5 HOH HOH 682 A H2O 683 5 HOH HOH 683 A H2O 684 5 HOH HOH 684 A n 1 80 A n 2 81 A n 3 82 A n 4 83 A n 5 84 A ASN 85 n 6 ASN 85 A PRO 86 n 7 PRO 86 A LYS 87 n 8 LYS 87 A TRP 88 n 9 TRP 88 A GLU 89 n 10 GLU 89 A ARG 90 n 11 ARG 90 A THR 91 n 12 THR 91 A ASN 92 n 13 ASN 92 A LEU 93 n 14 LEU 93 A THR 94 n 15 THR 94 A TYR 95 n 16 TYR 95 A ARG 96 n 17 ARG 96 A ILE 97 n 18 ILE 97 A ARG 98 n 19 ARG 98 A ASN 99 n 20 ASN 99 A TYR 100 n 21 TYR 100 A THR 101 n 22 THR 101 A PRO 102 n 23 PRO 102 A GLN 103 n 24 GLN 103 A LEU 104 n 25 LEU 104 A SER 105 n 26 SER 105 A GLU 106 n 27 GLU 106 A ALA 107 n 28 ALA 107 A GLU 108 n 29 GLU 108 A VAL 109 n 30 VAL 109 A GLU 110 n 31 GLU 110 A ARG 111 n 32 ARG 111 A ALA 112 n 33 ALA 112 A ILE 113 n 34 ILE 113 A LYS 114 n 35 LYS 114 A ASP 115 n 36 ASP 115 A ALA 116 n 37 ALA 116 A PHE 117 n 38 PHE 117 A GLU 118 n 39 GLU 118 A LEU 119 n 40 LEU 119 A TRP 120 n 41 TRP 120 A SER 121 n 42 SER 121 A VAL 122 n 43 VAL 122 A ALA 123 n 44 ALA 123 A SER 124 n 45 SER 124 A PRO 125 n 46 PRO 125 A LEU 126 n 47 LEU 126 A ILE 127 n 48 ILE 127 A PHE 128 n 49 PHE 128 A THR 129 n 50 THR 129 A ARG 130 n 51 ARG 130 A ILE 131 n 52 ILE 131 A SER 132 n 53 SER 132 A GLN 133 n 54 GLN 133 A GLY 134 n 55 GLY 134 A GLU 135 n 56 GLU 135 A ALA 136 n 57 ALA 136 A ASP 137 n 58 ASP 137 A ILE 138 n 59 ILE 138 A ASN 139 n 60 ASN 139 A ILE 140 n 61 ILE 140 A ALA 141 n 62 ALA 141 A PHE 142 n 63 PHE 142 A TYR 143 n 64 TYR 143 A GLN 144 n 65 GLN 144 A ARG 145 n 66 ARG 145 A ASP 146 n 67 ASP 146 A HIS 147 n 68 HIS 147 A GLY 148 n 69 GLY 148 A ASP 149 n 70 ASP 149 A ASN 150 n 71 ASN 150 A SER 151 n 72 SER 151 A PRO 152 n 73 PRO 152 A PHE 153 n 74 PHE 153 A ASP 154 n 75 ASP 154 A GLY 155 n 76 GLY 155 A PRO 156 n 77 PRO 156 A ASN 157 n 78 ASN 157 A GLY 158 n 79 GLY 158 A ILE 159 n 80 ILE 159 A LEU 160 n 81 LEU 160 A ALA 161 n 82 ALA 161 A HIS 162 n 83 HIS 162 A ALA 163 n 84 ALA 163 A PHE 164 n 85 PHE 164 A GLN 165 n 86 GLN 165 A PRO 166 n 87 PRO 166 A GLY 167 n 88 GLY 167 A GLN 168 n 89 GLN 168 A GLY 169 n 90 GLY 169 A ILE 170 n 91 ILE 170 A GLY 171 n 92 GLY 171 A GLY 172 n 93 GLY 172 A ASP 173 n 94 ASP 173 A ALA 174 n 95 ALA 174 A HIS 175 n 96 HIS 175 A PHE 176 n 97 PHE 176 A ASP 177 n 98 ASP 177 A ALA 178 n 99 ALA 178 A GLU 179 n 100 GLU 179 A GLU 180 n 101 GLU 180 A THR 181 n 102 THR 181 A TRP 182 n 103 TRP 182 A THR 183 n 104 THR 183 A ASN 184 n 105 ASN 184 A THR 185 n 106 THR 185 A SER 186 n 107 SER 186 A ALA 187 n 108 ALA 187 A ASN 188 n 109 ASN 188 A TYR 189 n 110 TYR 189 A ASN 190 n 111 ASN 190 A LEU 191 n 112 LEU 191 A PHE 192 n 113 PHE 192 A LEU 193 n 114 LEU 193 A VAL 194 n 115 VAL 194 A ALA 195 n 116 ALA 195 A ALA 196 n 117 ALA 196 A HIS 197 n 118 HIS 197 A GLU 198 n 119 GLU 198 A PHE 199 n 120 PHE 199 A GLY 200 n 121 GLY 200 A HIS 201 n 122 HIS 201 A SER 202 n 123 SER 202 A LEU 203 n 124 LEU 203 A GLY 204 n 125 GLY 204 A LEU 205 n 126 LEU 205 A ALA 206 n 127 ALA 206 A HIS 207 n 128 HIS 207 A SER 208 n 129 SER 208 A SER 209 n 130 SER 209 A ASP 210 n 131 ASP 210 A PRO 211 n 132 PRO 211 A GLY 212 n 133 GLY 212 A ALA 213 n 134 ALA 213 A LEU 214 n 135 LEU 214 A MET 215 n 136 MET 215 A TYR 216 n 137 TYR 216 A PRO 217 n 138 PRO 217 A ASN 218 n 139 ASN 218 A TYR 219 n 140 TYR 219 A ALA 220 n 141 ALA 220 A PHE 221 n 142 PHE 221 A ARG 222 n 143 ARG 222 A GLU 223 n 144 GLU 223 A THR 224 n 145 THR 224 A SER 225 n 146 SER 225 A ASN 226 n 147 ASN 226 A TYR 227 n 148 TYR 227 A SER 228 n 149 SER 228 A LEU 229 n 150 LEU 229 A PRO 230 n 151 PRO 230 A GLN 231 n 152 GLN 231 A ASP 232 n 153 ASP 232 A ASP 233 n 154 ASP 233 A ILE 234 n 155 ILE 234 A ASP 235 n 156 ASP 235 A GLY 236 n 157 GLY 236 A ILE 237 n 158 ILE 237 A GLN 238 n 159 GLN 238 A ALA 239 n 160 ALA 239 A ILE 240 n 161 ILE 240 A TYR 241 n 162 TYR 241 A GLY 242 n 163 GLY 242 A author_defined_assembly 1 monomeric A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A GLY 169 A O GLY 90 1_555 166.1 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A GLY 171 A O GLY 92 1_555 99.1 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 A GLY 171 A O GLY 92 1_555 92.9 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A ASP 173 A OD2 ASP 94 1_555 89.0 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 A ASP 173 A OD2 ASP 94 1_555 99.0 A GLY 171 A O GLY 92 1_555 A CA 996 B CA CA 1_555 A ASP 173 A OD2 ASP 94 1_555 85.5 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 A HOH 511 G O HOH 1_555 79.0 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 A HOH 511 G O HOH 1_555 87.3 A GLY 171 A O GLY 92 1_555 A CA 996 B CA CA 1_555 A HOH 511 G O HOH 1_555 159.2 A ASP 173 A OD2 ASP 94 1_555 A CA 996 B CA CA 1_555 A HOH 511 G O HOH 1_555 115.1 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 A ASP 149 A OD2 ASP 70 1_555 109.5 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 A HIS 162 A NE2 HIS 83 1_555 108.6 A ASP 149 A OD2 ASP 70 1_555 A ZN 998 D ZN ZN 1_555 A HIS 162 A NE2 HIS 83 1_555 111.2 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 A HIS 175 A ND1 HIS 96 1_555 110.9 A ASP 149 A OD2 ASP 70 1_555 A ZN 998 D ZN ZN 1_555 A HIS 175 A ND1 HIS 96 1_555 99.6 A HIS 162 A NE2 HIS 83 1_555 A ZN 998 D ZN ZN 1_555 A HIS 175 A ND1 HIS 96 1_555 116.6 A ASP 154 A OD2 ASP 75 1_555 A CA 997 C CA CA 1_555 A GLY 155 A O GLY 76 1_555 88.9 A ASP 154 A OD2 ASP 75 1_555 A CA 997 C CA CA 1_555 A ASN 157 A O ASN 78 1_555 90.0 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A ASN 157 A O ASN 78 1_555 92.8 A ASP 154 A OD2 ASP 75 1_555 A CA 997 C CA CA 1_555 A ILE 159 A O ILE 80 1_555 88.2 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A ILE 159 A O ILE 80 1_555 176.0 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 A ILE 159 A O ILE 80 1_555 89.9 A ASP 154 A OD2 ASP 75 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD1 ASP 98 1_555 90.5 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD1 ASP 98 1_555 79.4 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD1 ASP 98 1_555 172.2 A ILE 159 A O ILE 80 1_555 A CA 997 C CA CA 1_555 A ASP 177 A OD1 ASP 98 1_555 98.0 A ASP 154 A OD2 ASP 75 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE1 GLU 101 1_555 176.7 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE1 GLU 101 1_555 94.4 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE1 GLU 101 1_555 89.3 A ILE 159 A O ILE 80 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE1 GLU 101 1_555 88.6 A ASP 177 A OD1 ASP 98 1_555 A CA 997 C CA CA 1_555 A GLU 180 A OE1 GLU 101 1_555 90.6 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 A HIS 201 A NE2 HIS 122 1_555 100.3 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 A HIS 207 A NE2 HIS 128 1_555 119.7 A HIS 201 A NE2 HIS 122 1_555 A ZN 999 E ZN ZN 1_555 A HIS 207 A NE2 HIS 128 1_555 102.4 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 A BBT 1000 F N1 BBT 1_555 95.5 A HIS 201 A NE2 HIS 122 1_555 A ZN 999 E ZN ZN 1_555 A BBT 1000 F N1 BBT 1_555 125.6 A HIS 207 A NE2 HIS 128 1_555 A ZN 999 E ZN ZN 1_555 A BBT 1000 F N1 BBT 1_555 113.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 127 A O ILE 48 A N LEU 93 A N LEU 14 A O THR 94 A O THR 15 A N ILE 138 A N ILE 59 A O ASN 139 A O ASN 60 A N ALA 174 A N ALA 95 A N HIS 175 A N HIS 96 A O HIS 162 A O HIS 83 1 A CG GLN 168 A CG GLN 89 0 Y 1 A CD GLN 168 A CD GLN 89 0 Y 1 A OE1 GLN 168 A OE1 GLN 89 0 Y 1 A NE2 GLN 168 A NE2 GLN 89 0 Y 1 A MET 80 A MET 1 1 Y 1 A LEU 81 A LEU 2 1 Y 1 A THR 82 A THR 3 1 Y 1 A PRO 83 A PRO 4 1 Y 1 A GLY 84 A GLY 5 1 Y 1 A ASN 85 A ASN 6 0 Y 1 A ASN 226 A ASN 147 0 Y 1 A ARG 145 27.57 -123.84 1 A HIS 147 -141.15 33.58 1 A ASN 150 73.68 -4.78 1 A ASN 157 63.83 -159.34 1 A PRO 217 -66.65 51.49 0.2960000 0.2110000 2.0 8.0 521 11862 10862 4.8 random 1 2 MOLECULAR REPLACEMENT Engh & Huber 2.0 8.0 185 1462 28 0 1249 0.011 1.6 0.2960000 0.2110000 8.0 521 11713 1.8 20.0 1JJ9 16907 14371 2 3 1 85 1.8 20.0 1 85.0 phasing AMoRE refinement X-PLOR 3.1 data reduction X-GEN data scaling CCP4 (TRUNCATE) Crystal Structure of MMP8-Barbiturate Complex Reveals Mechanism for Collagen Substrate Recognition 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 5 N N A SER 105 A SER 26 HELX_P A VAL 122 A VAL 43 1 1 18 A ASN 190 A ASN 111 HELX_P A GLY 204 A GLY 125 1 2 15 A PRO 230 A PRO 151 HELX_P A GLY 242 A GLY 163 1 3 13 metalc 2.341 A ASP 137 A O ASP 58 1_555 A CA 996 B CA CA 1_555 metalc 2.056 A HIS 147 A NE2 HIS 68 1_555 A ZN 998 D ZN ZN 1_555 metalc 1.967 A ASP 149 A OD2 ASP 70 1_555 A ZN 998 D ZN ZN 1_555 metalc 2.285 A ASP 154 A OD2 ASP 75 1_555 A CA 997 C CA CA 1_555 metalc 2.167 A GLY 155 A O GLY 76 1_555 A CA 997 C CA CA 1_555 metalc 2.118 A ASN 157 A O ASN 78 1_555 A CA 997 C CA CA 1_555 metalc 2.309 A ILE 159 A O ILE 80 1_555 A CA 997 C CA CA 1_555 metalc 2.032 A HIS 162 A NE2 HIS 83 1_555 A ZN 998 D ZN ZN 1_555 metalc 2.206 A GLY 169 A O GLY 90 1_555 A CA 996 B CA CA 1_555 metalc 2.233 A GLY 171 A O GLY 92 1_555 A CA 996 B CA CA 1_555 metalc 2.370 A ASP 173 A OD2 ASP 94 1_555 A CA 996 B CA CA 1_555 metalc 1.952 A HIS 175 A ND1 HIS 96 1_555 A ZN 998 D ZN ZN 1_555 metalc 2.476 A ASP 177 A OD1 ASP 98 1_555 A CA 997 C CA CA 1_555 metalc 2.103 A GLU 180 A OE1 GLU 101 1_555 A CA 997 C CA CA 1_555 metalc 2.026 A HIS 197 A NE2 HIS 118 1_555 A ZN 999 E ZN ZN 1_555 metalc 1.953 A HIS 201 A NE2 HIS 122 1_555 A ZN 999 E ZN ZN 1_555 metalc 1.996 A HIS 207 A NE2 HIS 128 1_555 A ZN 999 E ZN ZN 1_555 metalc 1.624 A HOH 511 G O HOH 1_555 A CA 996 B CA CA 1_555 metalc 2.090 A ZN 999 E ZN ZN 1_555 A BBT 1000 F N1 BBT 1_555 HYDROLASE MMP-8, substrate recognition, cis-peptide bond, conformational transition, HYDROLASE A ASN 188 A ASN 109 1 A TYR 189 A TYR 110 0.02 MMP8_HUMAN UNP 1 100 P22894 MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGI LAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQA IYG 100 262 1JJ9 80 242 P22894 A 1 1 163 5 parallel parallel parallel anti-parallel A ILE 127 A ILE 48 A ARG 130 A ARG 51 A ASN 92 A ASN 13 A ILE 97 A ILE 18 A ILE 138 A ILE 59 A TYR 143 A TYR 64 A ALA 174 A ALA 95 A ASP 177 A ASP 98 A ALA 161 A ALA 82 A ALA 163 A ALA 84 BINDING SITE FOR RESIDUE CA A 996 A CA 996 Software 5 BINDING SITE FOR RESIDUE CA A 997 A CA 997 Software 6 BINDING SITE FOR RESIDUE ZN A 998 A ZN 998 Software 4 BINDING SITE FOR RESIDUE ZN A 999 A ZN 999 Software 4 BINDING SITE FOR RESIDUE BBT A 1000 A BBT 1000 Software 10 A ASP 137 A ASP 58 5 1_555 A GLY 169 A GLY 90 5 1_555 A GLY 171 A GLY 92 5 1_555 A ASP 173 A ASP 94 5 1_555 A HOH 511 G HOH 5 1_555 A ASP 154 A ASP 75 6 1_555 A GLY 155 A GLY 76 6 1_555 A ASN 157 A ASN 78 6 1_555 A ILE 159 A ILE 80 6 1_555 A ASP 177 A ASP 98 6 1_555 A GLU 180 A GLU 101 6 1_555 A HIS 147 A HIS 68 4 1_555 A ASP 149 A ASP 70 4 1_555 A HIS 162 A HIS 83 4 1_555 A HIS 175 A HIS 96 4 1_555 A HIS 197 A HIS 118 4 1_555 A HIS 201 A HIS 122 4 1_555 A HIS 207 A HIS 128 4 1_555 A BBT 1000 F BBT 4 1_555 A LEU 160 A LEU 81 10 1_555 A ALA 161 A ALA 82 10 1_555 A HIS 197 A HIS 118 10 1_555 A GLU 198 A GLU 119 10 1_555 A HIS 201 A HIS 122 10 1_555 A HIS 207 A HIS 128 10 1_555 A PRO 217 A PRO 138 10 1_555 A ASN 218 A ASN 139 10 1_555 A HOH 558 G HOH 10 1_555 A ZN 999 E ZN 10 1_555 23 I 2 2 2