1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhang, N.
Gorin, A.
Majumdar, A.
Kettani, A.
Chernichenko, N.
Skripkin, E.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
1063
1079
10.1006/jmbi.2001.4916
11531340
V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads.
2001
10.2210/pdb1jjp/pdb
pdb_00001jjp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4431.874
5'-D(*GP*GP*GP*AP*GP*GP*TP*TP*TP*GP*GP*GP*AP*T)-3'
2
syn
polymer
no
no
(DG)(DG)(DG)(DA)(DG)(DG)(DT)(DT)(DT)(DG)(DG)(DG)(DA)(DT)
GGGAGGTTTGGGAT
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-09-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2001-07-09
REL
REL
synthesized on an Applied Biosystems 392 DNA synthesizer
sample
all calculated structures submitted
8
8
2D NOESY
COSY, TOCSY
100mM NaCl, 2mM phosphate
6.6
1
atm
273
K
described in the primary citation
Simulated annealing in torsional angle space
3
lowest energy
100mM Nacl, 2mM phosphate
H2O
A. Brunger
refinement
X-PLOR
3.91
MSI, Inc
data analysis
Felix
2000
600
Varian
UNITY
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
A
4
n
4
DA
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
T
9
n
9
DT
9
A
G
10
n
10
DG
10
A
G
11
n
11
DG
11
A
G
12
n
12
DG
12
A
A
13
n
13
DA
13
A
T
14
n
14
DT
14
A
G
1
n
1
DG
1
B
G
2
n
2
DG
2
B
G
3
n
3
DG
3
B
A
4
n
4
DA
4
B
G
5
n
5
DG
5
B
G
6
n
6
DG
6
B
T
7
n
7
DT
7
B
T
8
n
8
DT
8
B
T
9
n
9
DT
9
B
G
10
n
10
DG
10
B
G
11
n
11
DG
11
B
G
12
n
12
DG
12
B
A
13
n
13
DA
13
B
T
14
n
14
DT
14
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O2
H61
DT
DA
8
13
1.42
1
B
B
O2
H61
DT
DA
8
13
1.42
2
A
A
H3
N1
DT
DA
8
13
1.58
2
B
B
H3
N1
DT
DA
8
13
1.59
3
A
A
O2
H61
DT
DA
8
13
1.46
3
B
B
O2
H61
DT
DA
8
13
1.46
4
B
B
O2
H61
DT
DA
8
13
1.57
4
A
A
O2
H61
DT
DA
8
13
1.57
5
A
A
O2
H61
DT
DA
8
13
1.56
5
B
B
O2
H61
DT
DA
8
13
1.56
7
B
B
O2
H61
DT
DA
8
13
1.54
7
A
A
O2
H61
DT
DA
8
13
1.54
8
B
B
O2
H61
DT
DA
8
13
1.53
8
A
A
O2
H61
DT
DA
8
13
1.53
1
8.09
1.20
115.70
123.79
A
A
A
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
1
-8.41
1.00
110.10
101.69
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
1
-5.21
0.80
105.90
100.69
A
A
A
O4'
C1'
C2'
DG
DG
DG
1
1
1
N
1
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
6.40
0.70
110.30
116.70
A
A
A
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
1
-4.85
0.80
105.90
101.05
A
A
A
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
1
8.81
1.10
109.80
118.61
A
A
A
C5'
C4'
O4'
DG
DG
DG
5
5
5
N
1
-6.36
0.80
105.90
99.54
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
1
-6.80
0.70
119.90
113.10
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
1
-6.98
1.00
110.10
103.12
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
1
-5.16
0.70
108.00
102.84
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
3.81
0.60
119.00
122.81
A
A
A
C4
C5
C7
DT
DT
DT
7
7
7
N
1
-4.39
0.60
122.90
118.51
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
1
9.21
0.30
108.30
117.51
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-3.62
0.60
122.90
119.28
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
1
12.06
1.20
119.70
131.76
A
A
A
C3'
O3'
P
DT
DT
DT
8
8
9
Y
1
-4.92
0.80
102.40
97.48
A
A
A
C3'
C2'
C1'
DT
DT
DT
9
9
9
N
1
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-6.22
0.80
102.40
96.18
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
1
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
8.46
1.20
119.70
128.16
A
A
A
C3'
O3'
P
DG
DG
DG
11
11
12
Y
1
-5.08
0.40
104.50
99.42
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
1
6.82
0.30
108.30
115.12
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
-3.98
0.40
104.50
100.52
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
1
8.07
1.20
115.70
123.77
B
B
B
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
1
-8.38
1.00
110.10
101.72
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
1
-5.20
0.80
105.90
100.70
B
B
B
O4'
C1'
C2'
DG
DG
DG
1
1
1
N
1
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
6.41
0.70
110.30
116.71
B
B
B
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
1
-4.85
0.80
105.90
101.05
B
B
B
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
1
8.75
1.10
109.80
118.55
B
B
B
C5'
C4'
O4'
DG
DG
DG
5
5
5
N
1
-6.36
0.80
105.90
99.54
B
B
B
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
1
-6.81
0.70
119.90
113.09
B
B
B
N3
C2
N2
DG
DG
DG
5
5
5
N
1
-6.92
1.00
110.10
103.18
B
B
B
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
1
-5.18
0.70
108.00
102.82
B
B
B
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
3.91
0.60
119.00
122.91
B
B
B
C4
C5
C7
DT
DT
DT
7
7
7
N
1
-4.44
0.60
122.90
118.46
B
B
B
C6
C5
C7
DT
DT
DT
7
7
7
N
1
9.21
0.30
108.30
117.51
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-3.62
0.60
122.90
119.28
B
B
B
C6
C5
C7
DT
DT
DT
8
8
8
N
1
12.05
1.20
119.70
131.75
B
B
B
C3'
O3'
P
DT
DT
DT
8
8
9
Y
1
-4.95
0.80
102.40
97.45
B
B
B
C3'
C2'
C1'
DT
DT
DT
9
9
9
N
1
2.72
0.30
108.30
111.02
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-6.27
0.80
102.40
96.13
B
B
B
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
1
2.45
0.30
108.30
110.75
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
8.56
1.20
119.70
128.26
B
B
B
C3'
O3'
P
DG
DG
DG
11
11
12
Y
1
-5.07
0.40
104.50
99.43
B
B
B
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
1
6.72
0.30
108.30
115.02
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
-3.96
0.40
104.50
100.54
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
2
-4.30
0.40
104.50
100.20
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
2
-10.26
1.00
110.10
99.84
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
2
10.44
0.30
108.30
118.74
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
-4.37
0.70
119.90
115.53
A
A
A
N3
C2
N2
DG
DG
DG
1
1
1
N
2
7.62
1.20
119.70
127.32
A
A
A
C3'
O3'
P
DG
DG
DA
3
3
4
Y
2
5.82
0.70
110.30
116.12
A
A
A
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
2
-6.86
0.70
102.20
95.34
A
A
A
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
2
-6.08
0.70
119.90
113.82
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
2
-5.28
0.80
105.90
100.62
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
2
-6.28
0.70
108.00
101.72
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
2
-5.17
0.70
108.00
102.83
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
9.76
1.10
109.80
119.56
A
A
A
C5'
C4'
O4'
DT
DT
DT
8
8
8
N
2
-14.96
1.90
112.60
97.64
A
A
A
N1
C1'
C2'
DT
DT
DT
8
8
8
N
2
6.97
0.60
119.00
125.97
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
2
-6.38
0.60
122.90
116.52
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
2
-5.81
0.80
105.90
100.09
A
A
A
O4'
C1'
C2'
DT
DT
DT
9
9
9
N
2
4.79
0.30
108.30
113.09
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
2
-6.09
0.80
105.90
99.81
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
2
3.41
0.30
108.30
111.71
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
2
-7.08
0.80
102.40
95.32
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
2
-4.21
0.70
119.90
115.69
A
A
A
N3
C2
N2
DG
DG
DG
11
11
11
N
2
8.66
1.20
119.70
128.36
A
A
A
C3'
O3'
P
DG
DG
DG
11
11
12
Y
2
-4.82
0.80
102.40
97.58
A
A
A
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
2
-2.71
0.40
104.50
101.79
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
2
-4.84
0.40
104.50
99.66
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
2
4.67
0.30
108.30
112.97
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
2
-4.08
0.40
104.50
100.42
B
B
B
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
2
-10.44
1.00
110.10
99.66
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
2
10.16
0.30
108.30
118.46
B
B
B
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
-4.34
0.70
119.90
115.56
B
B
B
N3
C2
N2
DG
DG
DG
1
1
1
N
2
5.81
0.70
110.30
116.11
B
B
B
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
2
-6.85
0.70
102.20
95.35
B
B
B
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
2
5.52
0.90
116.20
121.72
B
B
B
N1
C2
N2
DG
DG
DG
5
5
5
N
2
-6.36
0.70
119.90
113.54
B
B
B
N3
C2
N2
DG
DG
DG
5
5
5
N
2
-5.54
0.80
105.90
100.36
B
B
B
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
2
-6.25
0.70
108.00
101.75
B
B
B
O4'
C1'
N9
DG
DG
DG
6
6
6
N
2
-5.16
0.70
108.00
102.84
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
9.74
1.10
109.80
119.54
B
B
B
C5'
C4'
O4'
DT
DT
DT
8
8
8
N
2
-14.98
1.90
112.60
97.62
B
B
B
N1
C1'
C2'
DT
DT
DT
8
8
8
N
2
6.97
0.60
119.00
125.97
B
B
B
C4
C5
C7
DT
DT
DT
8
8
8
N
2
-6.30
0.60
122.90
116.60
B
B
B
C6
C5
C7
DT
DT
DT
8
8
8
N
2
-5.77
0.80
105.90
100.13
B
B
B
O4'
C1'
C2'
DT
DT
DT
9
9
9
N
2
4.79
0.30
108.30
113.09
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
2
-6.31
0.80
105.90
99.59
B
B
B
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
2
3.16
0.30
108.30
111.46
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
2
-7.25
0.80
102.40
95.15
B
B
B
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
2
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
2
8.36
1.20
119.70
128.06
B
B
B
C3'
O3'
P
DG
DG
DG
11
11
12
Y
2
-4.81
0.80
102.40
97.59
B
B
B
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
2
-2.86
0.40
104.50
101.64
B
B
B
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
2
-4.90
0.40
104.50
99.60
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
2
4.72
0.30
108.30
113.02
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
3
-10.04
1.00
110.10
100.06
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
3
3.82
0.30
108.30
112.12
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
3
8.59
1.20
119.70
128.29
A
A
A
C3'
O3'
P
DG
DG
DG
1
1
2
Y
3
-4.88
0.80
105.90
101.02
A
A
A
O4'
C1'
C2'
DG
DG
DG
3
3
3
N
3
4.26
0.70
110.30
114.56
A
A
A
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
3
-6.88
0.80
105.90
99.02
A
A
A
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
3
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
3
-5.18
0.70
102.20
97.02
A
A
A
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
3
-5.60
0.80
102.40
96.80
A
A
A
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
3
-5.87
0.70
119.90
114.03
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
3
-5.69
0.70
102.20
96.51
A
A
A
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
3
-6.93
0.80
105.90
98.97
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
3
-4.86
0.70
102.20
97.34
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
3
-6.04
0.80
105.90
99.86
A
A
A
O4'
C1'
C2'
DT
DT
DT
7
7
7
N
3
7.80
0.30
108.30
116.10
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
5.02
0.60
119.00
124.02
A
A
A
C4
C5
C7
DT
DT
DT
7
7
7
N
3
-4.40
0.60
122.90
118.50
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
3
-6.96
0.40
104.50
97.54
A
A
A
O4'
C4'
C3'
DT
DT
DT
8
8
8
N
3
12.86
0.30
108.30
121.16
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
3
8.04
1.20
119.70
127.74
A
A
A
C3'
O3'
P
DT
DT
DT
8
8
9
Y
3
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
3
-5.24
0.80
102.40
97.16
A
A
A
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
3
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
3
-4.64
0.70
119.90
115.26
A
A
A
N3
C2
N2
DG
DG
DG
10
10
10
N
3
-4.31
0.70
102.20
97.89
A
A
A
C4'
C3'
C2'
DG
DG
DG
11
11
11
N
3
-7.41
0.80
102.40
94.99
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
3
4.80
0.30
108.30
113.10
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
3
-4.60
0.70
119.90
115.30
A
A
A
N3
C2
N2
DG
DG
DG
11
11
11
N
3
-5.17
0.70
119.90
114.73
A
A
A
N3
C2
N2
DG
DG
DG
12
12
12
N
3
4.25
0.60
119.90
124.15
A
A
A
N1
C6
O6
DG
DG
DG
12
12
12
N
3
-4.91
0.60
128.60
123.69
A
A
A
C5
C6
O6
DG
DG
DG
12
12
12
N
3
-5.75
0.80
102.40
96.65
A
A
A
C3'
C2'
C1'
DA
DA
DA
13
13
13
N
3
1.89
0.30
108.30
110.19
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
3
-4.10
0.40
104.50
100.40
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
3
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
3
-10.06
1.00
110.10
100.04
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
3
3.81
0.30
108.30
112.11
B
B
B
O4'
C1'
N9
DG
DG
DG
1
1
1
N
3
8.57
1.20
119.70
128.27
B
B
B
C3'
O3'
P
DG
DG
DG
1
1
2
Y
3
-4.86
0.80
105.90
101.04
B
B
B
O4'
C1'
C2'
DG
DG
DG
3
3
3
N
3
-6.83
0.80
105.90
99.07
B
B
B
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
3
3.14
0.30
108.30
111.44
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
3
-5.29
0.70
102.20
96.91
B
B
B
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
3
-5.65
0.80
102.40
96.75
B
B
B
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
3
-5.90
0.70
119.90
114.00
B
B
B
N3
C2
N2
DG
DG
DG
5
5
5
N
3
-5.62
0.70
102.20
96.58
B
B
B
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
3
-6.88
0.80
105.90
99.02
B
B
B
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
3
-4.90
0.70
102.20
97.30
B
B
B
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
3
-6.11
0.80
105.90
99.79
B
B
B
O4'
C1'
C2'
DT
DT
DT
7
7
7
N
3
7.95
0.30
108.30
116.25
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
5.00
0.60
119.00
124.00
B
B
B
C4
C5
C7
DT
DT
DT
7
7
7
N
3
-4.42
0.60
122.90
118.48
B
B
B
C6
C5
C7
DT
DT
DT
7
7
7
N
3
-7.01
0.40
104.50
97.49
B
B
B
O4'
C4'
C3'
DT
DT
DT
8
8
8
N
3
12.79
0.30
108.30
121.09
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
3
8.05
1.20
119.70
127.75
B
B
B
C3'
O3'
P
DT
DT
DT
8
8
9
Y
3
2.58
0.30
108.30
110.88
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
3
-5.21
0.80
102.40
97.19
B
B
B
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
3
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
3
-4.65
0.70
119.90
115.25
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
3
-4.25
0.70
102.20
97.95
B
B
B
C4'
C3'
C2'
DG
DG
DG
11
11
11
N
3
-7.47
0.80
102.40
94.93
B
B
B
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
3
4.76
0.30
108.30
113.06
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
3
-4.51
0.70
119.90
115.39
B
B
B
N3
C2
N2
DG
DG
DG
11
11
11
N
3
-5.14
0.70
119.90
114.76
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
3
4.28
0.60
119.90
124.18
B
B
B
N1
C6
O6
DG
DG
DG
12
12
12
N
3
-4.87
0.60
128.60
123.73
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
3
-5.69
0.80
102.40
96.71
B
B
B
C3'
C2'
C1'
DA
DA
DA
13
13
13
N
3
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
3
-4.08
0.40
104.50
100.42
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
3
1.96
0.30
108.30
110.26
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
4
8.47
1.20
115.70
124.17
A
A
A
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
4
-8.10
1.00
110.10
102.00
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
4
-4.92
0.80
105.90
100.98
A
A
A
O4'
C1'
C2'
DG
DG
DG
1
1
1
N
4
5.60
0.70
110.30
115.90
A
A
A
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
4
-6.29
0.80
105.90
99.61
A
A
A
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
4
-5.48
0.70
102.20
96.72
A
A
A
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
4
2.10
0.30
108.30
110.40
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
4
6.06
0.90
116.20
122.26
A
A
A
N1
C2
N2
DG
DG
DG
5
5
5
N
4
-7.18
0.70
119.90
112.72
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
4
17.88
1.20
119.70
137.58
A
A
A
C3'
O3'
P
DG
DG
DG
5
5
6
Y
4
4.83
0.30
108.30
113.13
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
4
-5.14
0.80
105.90
100.76
A
A
A
O4'
C1'
C2'
DT
DT
DT
7
7
7
N
4
-5.33
0.70
108.00
102.67
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
3.78
0.60
119.00
122.78
A
A
A
C4
C5
C7
DT
DT
DT
7
7
7
N
4
-4.22
0.60
122.90
118.68
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
4
-5.18
0.70
102.20
97.02
A
A
A
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
4
7.41
0.30
108.30
115.71
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
4
10.96
1.20
119.70
130.66
A
A
A
C3'
O3'
P
DT
DT
DT
8
8
9
Y
4
9.20
1.20
119.70
128.90
A
A
A
C3'
O3'
P
DT
DT
DG
9
9
10
Y
4
-5.70
0.80
105.90
100.20
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
4
8.75
1.40
114.30
123.05
A
A
A
N9
C1'
C2'
DG
DG
DG
10
10
10
N
4
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
4
8.75
1.20
119.70
128.45
A
A
A
C3'
O3'
P
DG
DG
DG
10
10
11
Y
4
-5.85
0.70
119.90
114.05
A
A
A
N3
C2
N2
DG
DG
DG
12
12
12
N
4
-4.51
0.40
104.50
99.99
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
4
-4.88
0.70
102.20
97.32
A
A
A
C4'
C3'
C2'
DA
DA
DA
13
13
13
N
4
5.95
0.30
108.30
114.25
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
4
-3.41
0.40
104.50
101.09
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
4
5.55
0.30
108.30
113.85
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
4
8.47
1.20
115.70
124.17
B
B
B
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
4
-8.09
1.00
110.10
102.01
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
4
-5.00
0.80
105.90
100.90
B
B
B
O4'
C1'
C2'
DG
DG
DG
1
1
1
N
4
5.60
0.70
110.30
115.90
B
B
B
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
4
-6.25
0.80
105.90
99.65
B
B
B
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
4
-5.44
0.70
102.20
96.76
B
B
B
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
4
2.02
0.30
108.30
110.32
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
4
6.04
0.90
116.20
122.24
B
B
B
N1
C2
N2
DG
DG
DG
5
5
5
N
4
-7.21
0.70
119.90
112.69
B
B
B
N3
C2
N2
DG
DG
DG
5
5
5
N
4
17.83
1.20
119.70
137.53
B
B
B
C3'
O3'
P
DG
DG
DG
5
5
6
Y
4
4.92
0.30
108.30
113.22
B
B
B
O4'
C1'
N9
DG
DG
DG
6
6
6
N
4
-5.17
0.80
105.90
100.73
B
B
B
O4'
C1'
C2'
DT
DT
DT
7
7
7
N
4
-5.37
0.70
108.00
102.63
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
3.76
0.60
119.00
122.76
B
B
B
C4
C5
C7
DT
DT
DT
7
7
7
N
4
-4.23
0.60
122.90
118.67
B
B
B
C6
C5
C7
DT
DT
DT
7
7
7
N
4
-5.18
0.70
102.20
97.02
B
B
B
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
4
7.38
0.30
108.30
115.68
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
4
10.94
1.20
119.70
130.64
B
B
B
C3'
O3'
P
DT
DT
DT
8
8
9
Y
4
9.20
1.20
119.70
128.90
B
B
B
C3'
O3'
P
DT
DT
DG
9
9
10
Y
4
-5.61
0.80
105.90
100.29
B
B
B
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
4
8.65
1.40
114.30
122.95
B
B
B
N9
C1'
C2'
DG
DG
DG
10
10
10
N
4
2.67
0.30
108.30
110.97
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
4
8.78
1.20
119.70
128.48
B
B
B
C3'
O3'
P
DG
DG
DG
10
10
11
Y
4
-5.88
0.70
119.90
114.02
B
B
B
N3
C2
N2
DG
DG
DG
12
12
12
N
4
-4.54
0.40
104.50
99.96
B
B
B
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
4
-4.91
0.70
102.20
97.29
B
B
B
C4'
C3'
C2'
DA
DA
DA
13
13
13
N
4
6.00
0.30
108.30
114.30
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
4
-3.39
0.40
104.50
101.11
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
4
5.51
0.30
108.30
113.81
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
5
-7.94
1.00
110.10
102.16
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
5
7.56
1.20
119.70
127.26
A
A
A
C3'
O3'
P
DG
DG
DG
1
1
2
Y
5
-2.53
0.40
104.50
101.97
A
A
A
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
5
7.53
1.20
115.70
123.23
A
A
A
C5'
C4'
C3'
DA
DA
DA
4
4
4
N
5
6.44
0.30
108.30
114.74
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
5
9.48
1.20
119.70
129.18
A
A
A
C3'
O3'
P
DA
DA
DG
4
4
5
Y
5
-5.25
0.80
102.40
97.15
A
A
A
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
5
-5.44
0.70
119.90
114.46
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
5
-5.04
0.80
105.90
100.86
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
5
-9.10
0.70
108.00
98.90
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
5
6.93
1.10
109.80
116.73
A
A
A
C5'
C4'
O4'
DT
DT
DT
8
8
8
N
5
7.62
0.60
119.00
126.62
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
5
-8.01
0.60
122.90
114.89
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
5
7.46
1.10
109.80
117.26
A
A
A
C5'
C4'
O4'
DT
DT
DT
9
9
9
N
5
-4.83
0.80
102.40
97.57
A
A
A
C3'
C2'
C1'
DT
DT
DT
9
9
9
N
5
-6.44
0.80
105.90
99.46
A
A
A
O4'
C1'
C2'
DT
DT
DT
9
9
9
N
5
3.93
0.30
108.30
112.23
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
5
-3.73
0.60
122.90
119.17
A
A
A
C6
C5
C7
DT
DT
DT
9
9
9
N
5
-6.74
0.80
105.90
99.16
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
5
-5.81
0.80
102.40
96.59
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
5
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
5
-4.29
0.70
119.90
115.61
A
A
A
N3
C2
N2
DG
DG
DG
11
11
11
N
5
-3.60
0.60
128.60
125.00
A
A
A
C5
C6
O6
DG
DG
DG
11
11
11
N
5
-6.28
0.70
102.20
95.92
A
A
A
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
5
-7.01
0.40
104.50
97.49
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
5
4.01
0.30
108.30
112.31
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
5
-4.51
0.40
104.50
99.99
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
5
-6.02
1.00
110.10
104.08
A
A
A
C1'
O4'
C4'
DT
DT
DT
14
14
14
N
5
7.35
0.30
108.30
115.65
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
5
-7.96
1.00
110.10
102.14
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
5
7.59
1.20
119.70
127.29
B
B
B
C3'
O3'
P
DG
DG
DG
1
1
2
Y
5
-2.56
0.40
104.50
101.94
B
B
B
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
5
7.57
1.20
115.70
123.27
B
B
B
C5'
C4'
C3'
DA
DA
DA
4
4
4
N
5
6.49
0.30
108.30
114.79
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
5
9.53
1.20
119.70
129.23
B
B
B
C3'
O3'
P
DA
DA
DG
4
4
5
Y
5
-5.27
0.80
102.40
97.13
B
B
B
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
5
-5.34
0.70
119.90
114.56
B
B
B
N3
C2
N2
DG
DG
DG
5
5
5
N
5
-5.00
0.80
105.90
100.90
B
B
B
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
5
-9.14
0.70
108.00
98.86
B
B
B
O4'
C1'
N9
DG
DG
DG
6
6
6
N
5
6.90
1.10
109.80
116.70
B
B
B
C5'
C4'
O4'
DT
DT
DT
8
8
8
N
5
7.57
0.60
119.00
126.57
B
B
B
C4
C5
C7
DT
DT
DT
8
8
8
N
5
-7.95
0.60
122.90
114.95
B
B
B
C6
C5
C7
DT
DT
DT
8
8
8
N
5
7.41
1.10
109.80
117.21
B
B
B
C5'
C4'
O4'
DT
DT
DT
9
9
9
N
5
-4.80
0.80
102.40
97.60
B
B
B
C3'
C2'
C1'
DT
DT
DT
9
9
9
N
5
-6.45
0.80
105.90
99.45
B
B
B
O4'
C1'
C2'
DT
DT
DT
9
9
9
N
5
3.95
0.30
108.30
112.25
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
5
-3.69
0.60
122.90
119.21
B
B
B
C6
C5
C7
DT
DT
DT
9
9
9
N
5
-6.68
0.80
105.90
99.22
B
B
B
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
5
-5.80
0.80
102.40
96.60
B
B
B
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
5
3.13
0.30
108.30
111.43
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
5
-3.65
0.60
128.60
124.95
B
B
B
C5
C6
O6
DG
DG
DG
11
11
11
N
5
-6.26
0.70
102.20
95.94
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
5
-6.98
0.40
104.50
97.52
B
B
B
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
5
4.00
0.30
108.30
112.30
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
5
-4.62
0.40
104.50
99.88
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
5
7.36
0.30
108.30
115.66
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
6
8.39
1.20
115.70
124.09
A
A
A
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
6
-7.98
1.00
110.10
102.12
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
6
-4.88
0.70
119.90
115.02
A
A
A
N3
C2
N2
DG
DG
DG
3
3
3
N
6
-2.97
0.40
104.50
101.53
A
A
A
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
6
10.18
1.20
115.70
125.88
A
A
A
C5'
C4'
C3'
DA
DA
DA
4
4
4
N
6
9.13
0.30
108.30
117.43
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
6
11.15
1.20
119.70
130.85
A
A
A
C3'
O3'
P
DA
DA
DG
4
4
5
Y
6
-5.22
0.70
102.20
96.98
A
A
A
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
6
1.99
0.30
108.30
110.29
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
6
-6.87
0.70
119.90
113.03
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
6
-5.28
0.40
104.50
99.22
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
6
9.07
1.20
119.70
128.77
A
A
A
C3'
O3'
P
DG
DG
DT
6
6
7
Y
6
6.27
0.60
119.00
125.27
A
A
A
C4
C5
C7
DT
DT
DT
7
7
7
N
6
-6.07
0.60
122.90
116.83
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
6
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
6
6.88
0.60
119.00
125.88
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
6
-7.61
0.60
122.90
115.29
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
6
4.36
0.60
119.00
123.36
A
A
A
C4
C5
C7
DT
DT
DT
9
9
9
N
6
-4.95
0.60
122.90
117.95
A
A
A
C6
C5
C7
DT
DT
DT
9
9
9
N
6
-7.40
0.80
105.90
98.50
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
6
8.79
1.40
114.30
123.09
A
A
A
N9
C1'
C2'
DG
DG
DG
10
10
10
N
6
-7.40
0.80
102.40
95.00
A
A
A
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
6
2.35
0.30
108.30
110.65
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
6
7.65
1.20
119.70
127.35
A
A
A
C3'
O3'
P
DG
DG
DG
11
11
12
Y
6
-3.73
0.60
128.60
124.87
A
A
A
C5
C6
O6
DG
DG
DG
12
12
12
N
6
-6.89
1.00
110.10
103.21
A
A
A
C1'
O4'
C4'
DA
DA
DA
13
13
13
N
6
-6.09
0.80
105.90
99.81
A
A
A
O4'
C1'
C2'
DA
DA
DA
13
13
13
N
6
-3.82
0.40
104.50
100.68
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
6
5.15
0.30
108.30
113.45
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
6
8.39
1.20
115.70
124.09
B
B
B
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
6
-8.10
1.00
110.10
102.00
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
6
-4.77
0.70
119.90
115.13
B
B
B
N3
C2
N2
DG
DG
DG
3
3
3
N
6
-2.93
0.40
104.50
101.57
B
B
B
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
6
10.27
1.20
115.70
125.97
B
B
B
C5'
C4'
C3'
DA
DA
DA
4
4
4
N
6
9.12
0.30
108.30
117.42
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
6
11.17
1.20
119.70
130.87
B
B
B
C3'
O3'
P
DA
DA
DG
4
4
5
Y
6
-5.27
0.70
102.20
96.93
B
B
B
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
6
2.02
0.30
108.30
110.32
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
6
-6.93
0.70
119.90
112.97
B
B
B
N3
C2
N2
DG
DG
DG
5
5
5
N
6
-5.34
0.40
104.50
99.16
B
B
B
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
6
9.07
1.20
119.70
128.77
B
B
B
C3'
O3'
P
DG
DG
DT
6
6
7
Y
6
6.28
0.60
119.00
125.28
B
B
B
C4
C5
C7
DT
DT
DT
7
7
7
N
6
-6.07
0.60
122.90
116.83
B
B
B
C6
C5
C7
DT
DT
DT
7
7
7
N
6
1.83
0.30
108.30
110.13
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
6
6.87
0.60
119.00
125.87
B
B
B
C4
C5
C7
DT
DT
DT
8
8
8
N
6
-7.63
0.60
122.90
115.27
B
B
B
C6
C5
C7
DT
DT
DT
8
8
8
N
6
4.30
0.60
119.00
123.30
B
B
B
C4
C5
C7
DT
DT
DT
9
9
9
N
6
-4.92
0.60
122.90
117.98
B
B
B
C6
C5
C7
DT
DT
DT
9
9
9
N
6
-7.36
0.80
105.90
98.54
B
B
B
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
6
8.82
1.40
114.30
123.12
B
B
B
N9
C1'
C2'
DG
DG
DG
10
10
10
N
6
-7.35
0.80
102.40
95.05
B
B
B
C3'
C2'
C1'
DG
DG
DG
11
11
11
N
6
2.34
0.30
108.30
110.64
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
6
7.71
1.20
119.70
127.41
B
B
B
C3'
O3'
P
DG
DG
DG
11
11
12
Y
6
-3.78
0.60
128.60
124.82
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
6
-6.99
1.00
110.10
103.11
B
B
B
C1'
O4'
C4'
DA
DA
DA
13
13
13
N
6
-6.15
0.80
105.90
99.75
B
B
B
O4'
C1'
C2'
DA
DA
DA
13
13
13
N
6
-3.91
0.40
104.50
100.59
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
6
5.17
0.30
108.30
113.47
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
7
-3.30
0.40
104.50
101.20
A
A
A
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
7
14.57
1.20
115.70
130.27
A
A
A
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
7
-9.70
1.00
110.10
100.40
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
7
-4.88
0.80
105.90
101.02
A
A
A
O4'
C1'
C2'
DG
DG
DG
1
1
1
N
7
4.57
0.30
108.30
112.87
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
-4.84
0.80
105.90
101.06
A
A
A
O4'
C1'
C2'
DG
DG
DG
3
3
3
N
7
-3.97
0.60
128.60
124.63
A
A
A
C5
C6
O6
DG
DG
DG
3
3
3
N
7
10.41
1.20
119.70
130.11
A
A
A
C3'
O3'
P
DG
DG
DA
3
3
4
Y
7
-6.62
0.40
104.50
97.88
A
A
A
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
7
9.28
1.20
115.70
124.98
A
A
A
C5'
C4'
C3'
DA
DA
DA
4
4
4
N
7
-12.40
0.80
105.90
93.50
A
A
A
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
7
7.69
0.30
108.30
115.99
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
7
-5.20
0.80
102.40
97.20
A
A
A
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
7
-6.53
0.70
119.90
113.37
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
7
-5.25
0.80
102.40
97.15
A
A
A
C3'
C2'
C1'
DG
DG
DG
6
6
6
N
7
-7.48
0.70
108.00
100.52
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
7
4.26
0.60
119.00
123.26
A
A
A
C4
C5
C7
DT
DT
DT
7
7
7
N
7
-4.31
0.60
122.90
118.59
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
7
8.02
0.30
108.30
116.32
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
7
4.12
0.60
119.00
123.12
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
7
-4.66
0.60
122.90
118.24
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
7
8.50
1.20
119.70
128.20
A
A
A
C3'
O3'
P
DT
DT
DT
8
8
9
Y
7
-6.44
0.80
105.90
99.46
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
7
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
7
8.36
1.20
119.70
128.06
A
A
A
C3'
O3'
P
DG
DG
DG
10
10
11
Y
7
-5.13
0.80
102.40
97.27
A
A
A
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
7
-4.67
0.40
104.50
99.83
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
7
-3.36
0.40
104.50
101.14
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
7
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
7
-3.31
0.40
104.50
101.19
B
B
B
O4'
C4'
C3'
DG
DG
DG
1
1
1
N
7
14.51
1.20
115.70
130.21
B
B
B
C5'
C4'
C3'
DG
DG
DG
1
1
1
N
7
-9.70
1.00
110.10
100.40
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
7
4.57
0.30
108.30
112.87
B
B
B
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
-4.84
0.80
105.90
101.06
B
B
B
O4'
C1'
C2'
DG
DG
DG
3
3
3
N
7
-3.91
0.60
128.60
124.69
B
B
B
C5
C6
O6
DG
DG
DG
3
3
3
N
7
10.41
1.20
119.70
130.11
B
B
B
C3'
O3'
P
DG
DG
DA
3
3
4
Y
7
-6.67
0.40
104.50
97.83
B
B
B
O4'
C4'
C3'
DA
DA
DA
4
4
4
N
7
9.25
1.20
115.70
124.95
B
B
B
C5'
C4'
C3'
DA
DA
DA
4
4
4
N
7
-12.38
0.80
105.90
93.52
B
B
B
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
7
7.74
0.30
108.30
116.04
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
7
-5.20
0.80
102.40
97.20
B
B
B
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
7
-6.59
0.70
119.90
113.31
B
B
B
N3
C2
N2
DG
DG
DG
5
5
5
N
7
-5.24
0.80
102.40
97.16
B
B
B
C3'
C2'
C1'
DG
DG
DG
6
6
6
N
7
-7.57
0.70
108.00
100.43
B
B
B
O4'
C1'
N9
DG
DG
DG
6
6
6
N
7
4.34
0.60
119.00
123.34
B
B
B
C4
C5
C7
DT
DT
DT
7
7
7
N
7
-4.32
0.60
122.90
118.58
B
B
B
C6
C5
C7
DT
DT
DT
7
7
7
N
7
8.03
0.30
108.30
116.33
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
7
4.14
0.60
119.00
123.14
B
B
B
C4
C5
C7
DT
DT
DT
8
8
8
N
7
-4.66
0.60
122.90
118.24
B
B
B
C6
C5
C7
DT
DT
DT
8
8
8
N
7
8.49
1.20
119.70
128.19
B
B
B
C3'
O3'
P
DT
DT
DT
8
8
9
Y
7
-6.42
0.80
105.90
99.48
B
B
B
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
7
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
7
8.36
1.20
119.70
128.06
B
B
B
C3'
O3'
P
DG
DG
DG
10
10
11
Y
7
-4.23
0.70
102.20
97.97
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
7
-5.08
0.80
102.40
97.32
B
B
B
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
7
-4.72
0.40
104.50
99.78
B
B
B
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
7
-3.42
0.40
104.50
101.08
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
7
2.96
0.30
108.30
111.26
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
8
-8.49
1.00
110.10
101.61
A
A
A
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
8
-4.44
0.70
119.90
115.46
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
8
-4.96
0.80
102.40
97.44
A
A
A
C3'
C2'
C1'
DG
DG
DG
3
3
3
N
8
5.10
0.60
119.90
125.00
A
A
A
N1
C6
O6
DG
DG
DG
3
3
3
N
8
-5.39
0.60
128.60
123.21
A
A
A
C5
C6
O6
DG
DG
DG
3
3
3
N
8
5.50
0.70
110.30
115.80
A
A
A
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
8
-7.24
0.80
105.90
98.66
A
A
A
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
8
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
8
-5.89
0.80
102.40
96.51
A
A
A
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
8
-5.09
0.70
102.20
97.11
A
A
A
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
8
4.80
0.60
119.00
123.80
A
A
A
C4
C5
C7
DT
DT
DT
7
7
7
N
8
-4.87
0.60
122.90
118.03
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
8
13.88
1.60
120.90
134.78
A
A
A
P
O5'
C5'
DT
DT
DT
8
8
8
N
8
-2.68
0.40
104.50
101.82
A
A
A
O4'
C4'
C3'
DT
DT
DT
8
8
8
N
8
6.15
0.90
103.10
109.25
A
A
A
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
8
3.65
0.60
119.00
122.65
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
8
-6.05
0.60
122.90
116.85
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
8
9.15
1.20
119.70
128.85
A
A
A
C3'
O3'
P
DT
DT
DT
8
8
9
Y
8
-5.55
0.80
105.90
100.35
A
A
A
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
8
-4.28
0.70
102.20
97.92
A
A
A
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
8
-3.40
0.40
104.50
101.10
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
8
4.94
0.80
123.70
128.64
A
A
A
C5
C6
N6
DA
DA
DA
13
13
13
N
8
-3.22
0.40
104.50
101.28
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
8
8.54
0.30
108.30
116.84
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
8
-8.42
1.00
110.10
101.68
B
B
B
C1'
O4'
C4'
DG
DG
DG
1
1
1
N
8
-4.41
0.70
119.90
115.49
B
B
B
N3
C2
N2
DG
DG
DG
2
2
2
N
8
-5.05
0.80
102.40
97.35
B
B
B
C3'
C2'
C1'
DG
DG
DG
3
3
3
N
8
5.24
0.60
119.90
125.14
B
B
B
N1
C6
O6
DG
DG
DG
3
3
3
N
8
-5.43
0.60
128.60
123.17
B
B
B
C5
C6
O6
DG
DG
DG
3
3
3
N
8
5.44
0.70
110.30
115.74
B
B
B
C1'
O4'
C4'
DA
DA
DA
4
4
4
N
8
-7.16
0.80
105.90
98.74
B
B
B
O4'
C1'
C2'
DA
DA
DA
4
4
4
N
8
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
8
-5.90
0.80
102.40
96.50
B
B
B
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
8
-5.09
0.70
102.20
97.11
B
B
B
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
8
4.78
0.60
119.00
123.78
B
B
B
C4
C5
C7
DT
DT
DT
7
7
7
N
8
-4.90
0.60
122.90
118.00
B
B
B
C6
C5
C7
DT
DT
DT
7
7
7
N
8
13.81
1.60
120.90
134.71
B
B
B
P
O5'
C5'
DT
DT
DT
8
8
8
N
8
-2.66
0.40
104.50
101.84
B
B
B
O4'
C4'
C3'
DT
DT
DT
8
8
8
N
8
6.18
0.90
103.10
109.28
B
B
B
C4'
C3'
C2'
DT
DT
DT
8
8
8
N
8
-6.06
0.60
122.90
116.84
B
B
B
C6
C5
C7
DT
DT
DT
8
8
8
N
8
9.10
1.20
119.70
128.80
B
B
B
C3'
O3'
P
DT
DT
DT
8
8
9
Y
8
-4.82
0.80
102.40
97.58
B
B
B
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
8
-5.54
0.80
105.90
100.36
B
B
B
O4'
C1'
C2'
DG
DG
DG
10
10
10
N
8
-4.23
0.70
102.20
97.97
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
8
-3.42
0.40
104.50
101.08
B
B
B
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
8
5.00
0.80
123.70
128.70
B
B
B
C5
C6
N6
DA
DA
DA
13
13
13
N
8
-3.18
0.40
104.50
101.32
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
8
8.48
0.30
108.30
116.78
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
A
A
C3'
C2'
DG
DG
1
1
0.085
0.012
1.518
1.603
N
1
A
A
C3'
C2'
DT
DT
8
8
-0.074
0.008
1.516
1.442
N
1
A
A
C5
C7
DT
DT
14
14
0.061
0.006
1.496
1.557
N
1
B
B
C3'
C2'
DG
DG
1
1
0.086
0.012
1.518
1.604
N
1
B
B
C3'
C2'
DT
DT
8
8
-0.074
0.008
1.516
1.442
N
1
B
B
C5
C7
DT
DT
14
14
0.060
0.006
1.496
1.556
N
2
A
A
C3'
C2'
DG
DG
1
1
0.089
0.012
1.518
1.607
N
2
A
A
C3'
C2'
DT
DT
8
8
-0.049
0.008
1.516
1.467
N
2
A
A
C5
C7
DT
DT
14
14
0.041
0.006
1.496
1.537
N
2
B
B
C3'
C2'
DG
DG
1
1
0.089
0.012
1.518
1.607
N
2
B
B
C3'
C2'
DT
DT
8
8
-0.048
0.008
1.516
1.468
N
2
B
B
C5
C7
DT
DT
14
14
0.040
0.006
1.496
1.536
N
3
A
A
C3'
C2'
DG
DG
1
1
0.094
0.012
1.518
1.612
N
3
A
A
C5
C7
DT
DT
7
7
0.049
0.006
1.496
1.545
N
3
B
B
C3'
C2'
DG
DG
1
1
0.093
0.012
1.518
1.611
N
3
B
B
C5
C7
DT
DT
7
7
0.050
0.006
1.496
1.546
N
4
A
A
C3'
C2'
DG
DG
1
1
0.089
0.012
1.518
1.607
N
4
A
A
C3'
C2'
DT
DT
8
8
-0.050
0.008
1.516
1.466
N
4
A
A
C5
C7
DT
DT
14
14
0.036
0.006
1.496
1.532
N
4
B
B
C3'
C2'
DG
DG
1
1
0.090
0.012
1.518
1.608
N
4
B
B
C3'
C2'
DT
DT
8
8
-0.051
0.008
1.516
1.465
N
4
B
B
C5
C7
DT
DT
14
14
0.037
0.006
1.496
1.533
N
5
A
A
C3'
C2'
DG
DG
1
1
0.104
0.012
1.518
1.622
N
5
A
A
C5'
C4'
DA
DA
4
4
0.046
0.007
1.512
1.558
N
5
A
A
C3'
C2'
DT
DT
8
8
-0.048
0.008
1.516
1.468
N
5
B
B
C3'
C2'
DG
DG
1
1
0.103
0.012
1.518
1.621
N
5
B
B
C5'
C4'
DA
DA
4
4
0.045
0.007
1.512
1.557
N
5
B
B
C3'
C2'
DT
DT
8
8
-0.049
0.008
1.516
1.467
N
6
A
A
C3'
C2'
DG
DG
1
1
0.088
0.012
1.518
1.606
N
6
A
A
C5
C7
DT
DT
14
14
0.042
0.006
1.496
1.538
N
6
B
B
C3'
C2'
DG
DG
1
1
0.088
0.012
1.518
1.606
N
6
B
B
C5
C7
DT
DT
14
14
0.042
0.006
1.496
1.538
N
7
A
A
C3'
C2'
DG
DG
1
1
0.099
0.012
1.518
1.617
N
7
A
A
C3'
C2'
DT
DT
8
8
-0.062
0.008
1.516
1.454
N
7
A
A
C5
C7
DT
DT
14
14
0.057
0.006
1.496
1.553
N
7
B
B
C3'
C2'
DG
DG
1
1
0.098
0.012
1.518
1.616
N
7
B
B
C3'
C2'
DT
DT
8
8
-0.063
0.008
1.516
1.453
N
7
B
B
C5
C7
DT
DT
14
14
0.056
0.006
1.496
1.552
N
8
A
A
C3'
C2'
DG
DG
1
1
0.105
0.012
1.518
1.623
N
8
A
A
C5
C7
DT
DT
9
9
0.037
0.006
1.496
1.533
N
8
A
A
C5
C7
DT
DT
14
14
0.050
0.006
1.496
1.546
N
8
B
B
C3'
C2'
DG
DG
1
1
0.105
0.012
1.518
1.623
N
8
B
B
C5
C7
DT
DT
9
9
0.036
0.006
1.496
1.532
N
8
B
B
C5
C7
DT
DT
14
14
0.048
0.006
1.496
1.544
N
A(GGGG) Pentad-Containing Dimeric DNA Quadruplex Involving Stacked G(anti)G(anti)G(anti)G(syn) Tetrads
1
N
N
1
N
N
hydrog
TYPE_6_PAIR
A
DG
1
A
N7
DG
1
1_555
B
DG
5
B
N2
DG
5
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
O6
DG
1
1_555
B
DG
5
B
N1
DG
5
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N1
DG
1
1_555
B
DG
11
B
O6
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N2
DG
1
1_555
B
DG
11
B
N7
DG
11
1_555
hydrog
TYPE_11_PAIR
A
DG
2
A
N2
DG
2
1_555
A
DA
4
A
N7
DA
4
1_555
hydrog
TYPE_11_PAIR
A
DG
2
A
N3
DG
2
1_555
A
DA
4
A
N6
DA
4
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N1
DG
2
1_555
A
DG
5
A
O6
DG
5
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N2
DG
2
1_555
A
DG
5
A
N7
DG
5
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N7
DG
2
1_555
A
DG
11
A
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
O6
DG
2
1_555
A
DG
11
A
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DG
6
A
O6
DG
6
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DG
6
A
N7
DG
6
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N7
DG
3
1_555
A
DG
12
A
N2
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DG
12
A
N1
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N1
DG
5
1_555
B
DG
1
B
O6
DG
1
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N2
DG
5
1_555
B
DG
1
B
N7
DG
1
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
N1
DG
6
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
N2
DG
6
1_555
A
DG
10
A
N7
DG
10
1_555
hydrog
DT-DG MISPAIR
A
DT
8
A
N3
DT
8
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
REVERSED WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
A
DA
13
A
N1
DA
13
1_555
hydrog
REVERSED WATSON-CRICK
A
DT
8
A
O2
DT
8
1_555
A
DA
13
A
N6
DA
13
1_555
hydrog
DT-DA PAIR
A
DT
9
A
O2
DT
9
1_555
A
DA
13
A
N6
DA
13
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
A
DG
12
A
O6
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
A
DG
12
A
N7
DG
12
1_555
hydrog
DG-DA MISPAIR
A
DG
10
A
O6
DG
10
1_555
A
DA
13
A
N6
DA
13
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N7
DG
11
1_555
B
DG
1
B
N2
DG
1
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
O6
DG
11
1_555
B
DG
1
B
N1
DG
1
1_555
hydrog
TYPE_11_PAIR
B
DG
2
B
N2
DG
2
1_555
B
DA
4
B
N7
DA
4
1_555
hydrog
TYPE_11_PAIR
B
DG
2
B
N3
DG
2
1_555
B
DA
4
B
N6
DA
4
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
N1
DG
2
1_555
B
DG
5
B
O6
DG
5
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
N2
DG
2
1_555
B
DG
5
B
N7
DG
5
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
N7
DG
2
1_555
B
DG
11
B
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
O6
DG
2
1_555
B
DG
11
B
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
B
DG
3
B
N1
DG
3
1_555
B
DG
6
B
O6
DG
6
1_555
hydrog
TYPE_6_PAIR
B
DG
3
B
N2
DG
3
1_555
B
DG
6
B
N7
DG
6
1_555
hydrog
TYPE_6_PAIR
B
DG
3
B
N7
DG
3
1_555
B
DG
12
B
N2
DG
12
1_555
hydrog
TYPE_6_PAIR
B
DG
3
B
O6
DG
3
1_555
B
DG
12
B
N1
DG
12
1_555
hydrog
TYPE_6_PAIR
B
DG
6
B
N1
DG
6
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
B
DG
6
B
N2
DG
6
1_555
B
DG
10
B
N7
DG
10
1_555
hydrog
DT-DG MISPAIR
B
DT
8
B
N3
DT
8
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
REVERSED WATSON-CRICK
B
DT
8
B
N3
DT
8
1_555
B
DA
13
B
N1
DA
13
1_555
hydrog
REVERSED WATSON-CRICK
B
DT
8
B
O2
DT
8
1_555
B
DA
13
B
N6
DA
13
1_555
hydrog
DT-DA PAIR
B
DT
9
B
O2
DT
9
1_555
B
DA
13
B
N6
DA
13
1_555
hydrog
TYPE_6_PAIR
B
DG
10
B
N1
DG
10
1_555
B
DG
12
B
O6
DG
12
1_555
hydrog
TYPE_6_PAIR
B
DG
10
B
N2
DG
10
1_555
B
DG
12
B
N7
DG
12
1_555
hydrog
DG-DA MISPAIR
B
DG
10
B
O6
DG
10
1_555
B
DA
13
B
N6
DA
13
1_555
DNA
A(GGGG) pentad, dimeric quadruplex, double chain reversal loop, G(anti)G(anti)G(anti)G(syn) tetrads, V-shaped loop and scaffold, DNA
1JJP
PDB
1
1JJP
1
14
1JJP
1
14
1JJP
A
1
1
14
1
14
1JJP
1
14
1JJP
B
1
1
14