0.015144 0.000000 0.003352 0.000000 0.023331 0.000000 0.000000 0.000000 0.011710 0.00000 0.00000 0.00000 Lee, K.H. Wucherpfennig, K.W. Wiley, D.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 102.48 90.00 66.034 42.862 87.467 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 R C N 251 R C N 252 R C N 253 S C N 254 R C N 255 N C N 256 N C N 257 N C N 258 N N N 259 N O N 260 N O N 261 N O N 262 N O N 263 N O N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N C N 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C N 325 N O N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 R C N 339 N O N 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N N Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C N 389 N O N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C N 407 N C N 408 N C N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing Y 278 N doub Y 279 N sing Y 280 N sing N 281 N sing Y 282 N doub N 283 N sing Y 284 N doub N 285 N sing Y 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing Y 347 N doub Y 348 N sing Y 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N sing Y 356 N doub N 357 N sing Y 358 N doub N 359 N sing Y 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N doub N 380 N sing Y 381 N doub N 382 N sing Y 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing UK Nat.Immunol. 1529-2908 2 501 507 10.1038/88694 11376336 Structure of a human insulin peptide-HLA-DQ8 complex and susceptibility to type 1 diabetes. 2001 10.2210/pdb1jk8/pdb pdb_00001jk8 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 100 1 N CCD 2000-01-01 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 14-BM-C APS 1.0 SYNCHROTRON APS BEAMLINE 14-BM-C 20690.092 MHC class II HLA-DQ8 alpha chain (DQA1*0301) 1 man polymer 22333.100 MHC class II HLA-DQ8 beta chain (DQB1*0302) 1 man polymer 1479.721 insulin B peptide peptide (9-SHLVEALYLVCGERG-23) 1 syn polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 18.015 water 70 nat water MHC class II antigen,MHC class II protein,Major histocompatibility complex,class II,DQ alpha 1 no no VADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNST AATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEI YDCKVEHWGLDEPLLKHWEPE VADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNST AATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEI YDCKVEHWGLDEPLLKHWEPE A polypeptide(L) no no SPEDFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHN YQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLE MTPQRGDVYTCHVEHPSLQNPIIVEWRAQS SPEDFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHN YQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLE MTPQRGDVYTCHVEHPSLQNPIIVEWRAQS B polypeptide(L) no no LVEALYLVCGERGG LVEALYLVCGERGG C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo fall armyworm Spodoptera sample 1 181 HLA-DQA1, DQA1 9606 Homo sapiens 7108 Spodoptera frugiperda BACULOVIRUS Biological sequence human Homo fall armyworm Spodoptera sample 1 190 HLA-DQB1 9606 Homo sapiens 7108 Spodoptera frugiperda BACULOVIRUS Biological sequence 1 2.71 54.64 VAPOR DIFFUSION, HANGING DROP 3.5 PEG 8000, magnesium acetate, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 18K 291.0 exptl_crystal_grow pdbx_unobs_or_zero_occ_residues chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_ref_seq_dif struct_site struct_site_gen atom_site chem_comp chem_comp_atom chem_comp_bond database_2 diffrn entity entity_name_com entity_poly entity_poly_seq entity_src_gen pdbx_audit_support pdbx_contact_author pdbx_database_status pdbx_entity_src_syn pdbx_entry_details pdbx_initial_refinement_model pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_assembly_prop pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_residues pdbx_validate_rmsd_angle pdbx_validate_rmsd_bond refine refine_ls_restr reflns_shell software struct struct_conf struct_ref struct_ref_seq struct_ref_seq_dif struct_sheet struct_sheet_order struct_sheet_range repository Initial release Carbohydrate remediation repository Remediation Sequence discrepancy replacement of a residue Asp 157 to Ala author Coordinate replacement Version format compliance Non-polymer description Version format compliance Advisory Experimental preparation Data collection Database references Derived calculations Structure summary Advisory Atomic model Author supporting evidence Data collection Database references Derived calculations Other Polymer sequence Refinement description Source and taxonomy Structure summary 1 0 2001-08-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-31 1 4 2020-07-29 2 0 2024-09-18 _exptl_crystal_grow.temp _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn.pdbx_serial_crystal_experiment _entity.formula_weight _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly_seq.mon_id _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.pdbx_seq_type _pdbx_database_status.SG_entry _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_struct_assembly_prop.value _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.sheet_id _refine.pdbx_isotropic_thermal_model _refine.solvent_model_param_bsol _refine.solvent_model_param_ksol _software.classification _software.name _software.version _struct.pdbx_CASP_flag _struct_conf.pdbx_PDB_helix_id _struct_ref.db_code _struct_ref.db_name _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_accession _struct_ref_seq_dif.align_id _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.details _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.seq_num _struct_sheet.id _struct_sheet_order.sheet_id _struct_sheet_range.sheet_id United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) P01 AI39619 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc lkh@gnu.ac.kr 0000-0001-5353-3853 Kon Ho Lee principal investigator/group leader N RCSB Y RCSB 2001-07-11 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS). 9606 human Homo sapiens sample 1 14 N 1IAK PDB experimental model 1DHL PDB experimental model NAG 401 4 NAG NAG 401 A HOH 402 5 HOH HOH 402 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 410 5 HOH HOH 410 A HOH 411 5 HOH HOH 411 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 423 5 HOH HOH 423 A HOH 424 5 HOH HOH 424 A HOH 425 5 HOH HOH 425 A HOH 426 5 HOH HOH 426 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 432 5 HOH HOH 432 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 435 5 HOH HOH 435 A HOH 436 5 HOH HOH 436 A HOH 193 5 HOH HOH 193 B HOH 194 5 HOH HOH 194 B HOH 195 5 HOH HOH 195 B HOH 196 5 HOH HOH 196 B HOH 197 5 HOH HOH 197 B HOH 198 5 HOH HOH 198 B HOH 199 5 HOH HOH 199 B HOH 200 5 HOH HOH 200 B HOH 201 5 HOH HOH 201 B HOH 202 5 HOH HOH 202 B HOH 203 5 HOH HOH 203 B HOH 204 5 HOH HOH 204 B HOH 205 5 HOH HOH 205 B HOH 206 5 HOH HOH 206 B HOH 207 5 HOH HOH 207 B HOH 208 5 HOH HOH 208 B HOH 209 5 HOH HOH 209 B HOH 210 5 HOH HOH 210 B HOH 211 5 HOH HOH 211 B HOH 212 5 HOH HOH 212 B HOH 213 5 HOH HOH 213 B HOH 214 5 HOH HOH 214 B HOH 215 5 HOH HOH 215 B HOH 216 5 HOH HOH 216 B HOH 217 5 HOH HOH 217 B HOH 218 5 HOH HOH 218 B HOH 219 5 HOH HOH 219 B HOH 220 5 HOH HOH 220 B HOH 221 5 HOH HOH 221 B HOH 222 5 HOH HOH 222 B HOH 223 5 HOH HOH 223 B HOH 224 5 HOH HOH 224 B HOH 15 5 HOH HOH 15 C HOH 16 5 HOH HOH 16 C HOH 17 5 HOH HOH 17 C VAL 2 n 1 VAL 2 A ALA 3 n 2 ALA 3 A ASP 4 n 3 ASP 4 A HIS 5 n 4 HIS 5 A VAL 6 n 5 VAL 6 A ALA 7 n 6 ALA 7 A SER 8 n 7 SER 8 A TYR 9 n 8 TYR 9 A GLY 9 n 9 A GLY 9 A VAL 10 n 10 VAL 10 A ASN 11 n 11 ASN 11 A LEU 12 n 12 LEU 12 A TYR 13 n 13 TYR 13 A GLN 14 n 14 GLN 14 A SER 15 n 15 SER 15 A TYR 16 n 16 TYR 16 A GLY 17 n 17 GLY 17 A PRO 18 n 18 PRO 18 A SER 19 n 19 SER 19 A GLY 20 n 20 GLY 20 A GLN 21 n 21 GLN 21 A TYR 22 n 22 TYR 22 A SER 23 n 23 SER 23 A HIS 24 n 24 HIS 24 A GLU 25 n 25 GLU 25 A PHE 26 n 26 PHE 26 A ASP 27 n 27 ASP 27 A GLY 28 n 28 GLY 28 A ASP 29 n 29 ASP 29 A GLU 30 n 30 GLU 30 A GLU 31 n 31 GLU 31 A PHE 32 n 32 PHE 32 A TYR 33 n 33 TYR 33 A VAL 34 n 34 VAL 34 A ASP 35 n 35 ASP 35 A LEU 36 n 36 LEU 36 A GLU 37 n 37 GLU 37 A ARG 38 n 38 ARG 38 A LYS 39 n 39 LYS 39 A GLU 40 n 40 GLU 40 A THR 41 n 41 THR 41 A VAL 42 n 42 VAL 42 A TRP 43 n 43 TRP 43 A GLN 44 n 44 GLN 44 A LEU 45 n 45 LEU 45 A PRO 46 n 46 PRO 46 A LEU 47 n 47 LEU 47 A PHE 48 n 48 PHE 48 A ARG 49 n 49 ARG 49 A ARG 50 n 50 ARG 50 A PHE 51 n 51 PHE 51 A ARG 52 n 52 ARG 52 A ARG 53 n 53 ARG 53 A PHE 54 n 54 PHE 54 A ASP 55 n 55 ASP 55 A PRO 56 n 56 PRO 56 A GLN 57 n 57 GLN 57 A PHE 58 n 58 PHE 58 A ALA 59 n 59 ALA 59 A LEU 60 n 60 LEU 60 A THR 61 n 61 THR 61 A ASN 62 n 62 ASN 62 A ILE 63 n 63 ILE 63 A ALA 64 n 64 ALA 64 A VAL 65 n 65 VAL 65 A LEU 66 n 66 LEU 66 A LYS 67 n 67 LYS 67 A HIS 68 n 68 HIS 68 A ASN 69 n 69 ASN 69 A LEU 70 n 70 LEU 70 A ASN 71 n 71 ASN 71 A ILE 72 n 72 ILE 72 A VAL 73 n 73 VAL 73 A ILE 74 n 74 ILE 74 A LYS 75 n 75 LYS 75 A ARG 76 n 76 ARG 76 A SER 77 n 77 SER 77 A ASN 78 n 78 ASN 78 A SER 79 n 79 SER 79 A THR 80 n 80 THR 80 A ALA 81 n 81 ALA 81 A ALA 82 n 82 ALA 82 A THR 83 n 83 THR 83 A ASN 84 n 84 ASN 84 A GLU 85 n 85 GLU 85 A VAL 86 n 86 VAL 86 A PRO 87 n 87 PRO 87 A GLU 88 n 88 GLU 88 A VAL 89 n 89 VAL 89 A THR 90 n 90 THR 90 A VAL 91 n 91 VAL 91 A PHE 92 n 92 PHE 92 A SER 93 n 93 SER 93 A LYS 94 n 94 LYS 94 A SER 95 n 95 SER 95 A PRO 96 n 96 PRO 96 A VAL 97 n 97 VAL 97 A THR 98 n 98 THR 98 A LEU 99 n 99 LEU 99 A GLY 100 n 100 GLY 100 A GLN 101 n 101 GLN 101 A PRO 102 n 102 PRO 102 A ASN 103 n 103 ASN 103 A THR 104 n 104 THR 104 A LEU 105 n 105 LEU 105 A ILE 106 n 106 ILE 106 A CYS 107 n 107 CYS 107 A LEU 108 n 108 LEU 108 A VAL 109 n 109 VAL 109 A ASP 110 n 110 ASP 110 A ASN 111 n 111 ASN 111 A ILE 112 n 112 ILE 112 A PHE 113 n 113 PHE 113 A PRO 114 n 114 PRO 114 A PRO 115 n 115 PRO 115 A VAL 116 n 116 VAL 116 A VAL 117 n 117 VAL 117 A ASN 118 n 118 ASN 118 A ILE 119 n 119 ILE 119 A THR 120 n 120 THR 120 A TRP 121 n 121 TRP 121 A LEU 122 n 122 LEU 122 A SER 123 n 123 SER 123 A ASN 124 n 124 ASN 124 A GLY 125 n 125 GLY 125 A HIS 126 n 126 HIS 126 A SER 127 n 127 SER 127 A VAL 128 n 128 VAL 128 A THR 129 n 129 THR 129 A GLU 130 n 130 GLU 130 A GLY 131 n 131 GLY 131 A VAL 132 n 132 VAL 132 A SER 133 n 133 SER 133 A GLU 134 n 134 GLU 134 A THR 135 n 135 THR 135 A SER 136 n 136 SER 136 A PHE 137 n 137 PHE 137 A LEU 138 n 138 LEU 138 A SER 139 n 139 SER 139 A LYS 140 n 140 LYS 140 A SER 141 n 141 SER 141 A ASP 142 n 142 ASP 142 A HIS 143 n 143 HIS 143 A SER 144 n 144 SER 144 A PHE 145 n 145 PHE 145 A PHE 146 n 146 PHE 146 A LYS 147 n 147 LYS 147 A ILE 148 n 148 ILE 148 A SER 149 n 149 SER 149 A TYR 150 n 150 TYR 150 A LEU 151 n 151 LEU 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A LEU 154 n 154 LEU 154 A PRO 155 n 155 PRO 155 A SER 156 n 156 SER 156 A ALA 157 n 157 ALA 157 A ASP 158 n 158 ASP 158 A GLU 159 n 159 GLU 159 A ILE 160 n 160 ILE 160 A TYR 161 n 161 TYR 161 A ASP 162 n 162 ASP 162 A CYS 163 n 163 CYS 163 A LYS 164 n 164 LYS 164 A VAL 165 n 165 VAL 165 A GLU 166 n 166 GLU 166 A HIS 167 n 167 HIS 167 A TRP 168 n 168 TRP 168 A GLY 169 n 169 GLY 169 A LEU 170 n 170 LEU 170 A ASP 171 n 171 ASP 171 A GLU 172 n 172 GLU 172 A PRO 173 n 173 PRO 173 A LEU 174 n 174 LEU 174 A LEU 175 n 175 LEU 175 A LYS 176 n 176 LYS 176 A HIS 177 n 177 HIS 177 A TRP 178 n 178 TRP 178 A GLU 179 n 179 GLU 179 A PRO 180 n 180 PRO 180 A GLU 181 n 181 GLU 181 A SER 3 n 1 SER 3 B PRO 4 n 2 PRO 4 B GLU 5 n 3 GLU 5 B ASP 6 n 4 ASP 6 B PHE 7 n 5 PHE 7 B VAL 8 n 6 VAL 8 B TYR 9 n 7 TYR 9 B GLN 10 n 8 GLN 10 B PHE 11 n 9 PHE 11 B LYS 12 n 10 LYS 12 B GLY 13 n 11 GLY 13 B MET 14 n 12 MET 14 B CYS 15 n 13 CYS 15 B TYR 16 n 14 TYR 16 B PHE 17 n 15 PHE 17 B THR 18 n 16 THR 18 B ASN 19 n 17 ASN 19 B GLY 20 n 18 GLY 20 B THR 21 n 19 THR 21 B GLU 22 n 20 GLU 22 B ARG 23 n 21 ARG 23 B VAL 24 n 22 VAL 24 B ARG 25 n 23 ARG 25 B LEU 26 n 24 LEU 26 B VAL 27 n 25 VAL 27 B THR 28 n 26 THR 28 B ARG 29 n 27 ARG 29 B TYR 30 n 28 TYR 30 B ILE 31 n 29 ILE 31 B TYR 32 n 30 TYR 32 B ASN 33 n 31 ASN 33 B ARG 34 n 32 ARG 34 B GLU 35 n 33 GLU 35 B GLU 36 n 34 GLU 36 B TYR 37 n 35 TYR 37 B ALA 38 n 36 ALA 38 B ARG 39 n 37 ARG 39 B PHE 40 n 38 PHE 40 B ASP 41 n 39 ASP 41 B SER 42 n 40 SER 42 B ASP 43 n 41 ASP 43 B VAL 44 n 42 VAL 44 B GLY 45 n 43 GLY 45 B VAL 46 n 44 VAL 46 B TYR 47 n 45 TYR 47 B ARG 48 n 46 ARG 48 B ALA 49 n 47 ALA 49 B VAL 50 n 48 VAL 50 B THR 51 n 49 THR 51 B PRO 52 n 50 PRO 52 B LEU 53 n 51 LEU 53 B GLY 54 n 52 GLY 54 B PRO 55 n 53 PRO 55 B PRO 56 n 54 PRO 56 B ALA 57 n 55 ALA 57 B ALA 58 n 56 ALA 58 B GLU 59 n 57 GLU 59 B TYR 60 n 58 TYR 60 B TRP 61 n 59 TRP 61 B ASN 62 n 60 ASN 62 B SER 63 n 61 SER 63 B GLN 64 n 62 GLN 64 B LYS 65 n 63 LYS 65 B GLU 66 n 64 GLU 66 B VAL 67 n 65 VAL 67 B LEU 68 n 66 LEU 68 B GLU 69 n 67 GLU 69 B ARG 70 n 68 ARG 70 B THR 71 n 69 THR 71 B ARG 72 n 70 ARG 72 B ALA 73 n 71 ALA 73 B GLU 74 n 72 GLU 74 B LEU 75 n 73 LEU 75 B ASP 76 n 74 ASP 76 B THR 77 n 75 THR 77 B VAL 78 n 76 VAL 78 B CYS 79 n 77 CYS 79 B ARG 80 n 78 ARG 80 B HIS 81 n 79 HIS 81 B ASN 82 n 80 ASN 82 B TYR 83 n 81 TYR 83 B GLN 84 n 82 GLN 84 B LEU 85 n 83 LEU 85 B GLU 86 n 84 GLU 86 B LEU 87 n 85 LEU 87 B ARG 88 n 86 ARG 88 B THR 89 n 87 THR 89 B THR 90 n 88 THR 90 B LEU 91 n 89 LEU 91 B GLN 92 n 90 GLN 92 B ARG 93 n 91 ARG 93 B ARG 94 n 92 ARG 94 B VAL 95 n 93 VAL 95 B GLU 96 n 94 GLU 96 B PRO 97 n 95 PRO 97 B THR 98 n 96 THR 98 B VAL 99 n 97 VAL 99 B THR 100 n 98 THR 100 B ILE 101 n 99 ILE 101 B SER 102 n 100 SER 102 B PRO 103 n 101 PRO 103 B SER 104 n 102 SER 104 B ARG 105 n 103 ARG 105 B THR 106 n 104 THR 106 B GLU 107 n 105 GLU 107 B ALA 108 n 106 ALA 108 B LEU 109 n 107 LEU 109 B ASN 110 n 108 ASN 110 B HIS 111 n 109 HIS 111 B HIS 112 n 110 HIS 112 B ASN 113 n 111 ASN 113 B LEU 114 n 112 LEU 114 B LEU 115 n 113 LEU 115 B VAL 116 n 114 VAL 116 B CYS 117 n 115 CYS 117 B SER 118 n 116 SER 118 B VAL 119 n 117 VAL 119 B THR 120 n 118 THR 120 B ASP 121 n 119 ASP 121 B PHE 122 n 120 PHE 122 B TYR 123 n 121 TYR 123 B PRO 124 n 122 PRO 124 B ALA 125 n 123 ALA 125 B GLN 126 n 124 GLN 126 B ILE 127 n 125 ILE 127 B LYS 128 n 126 LYS 128 B VAL 129 n 127 VAL 129 B ARG 130 n 128 ARG 130 B TRP 131 n 129 TRP 131 B PHE 132 n 130 PHE 132 B ARG 133 n 131 ARG 133 B ASN 134 n 132 ASN 134 B ASP 135 n 133 ASP 135 B GLN 136 n 134 GLN 136 B GLU 137 n 135 GLU 137 B GLU 138 n 136 GLU 138 B THR 139 n 137 THR 139 B THR 140 n 138 THR 140 B GLY 141 n 139 GLY 141 B VAL 142 n 140 VAL 142 B VAL 143 n 141 VAL 143 B SER 144 n 142 SER 144 B THR 145 n 143 THR 145 B PRO 146 n 144 PRO 146 B LEU 147 n 145 LEU 147 B ILE 148 n 146 ILE 148 B ARG 149 n 147 ARG 149 B ASN 150 n 148 ASN 150 B GLY 151 n 149 GLY 151 B ASP 152 n 150 ASP 152 B TRP 153 n 151 TRP 153 B THR 154 n 152 THR 154 B PHE 155 n 153 PHE 155 B GLN 156 n 154 GLN 156 B ILE 157 n 155 ILE 157 B LEU 158 n 156 LEU 158 B VAL 159 n 157 VAL 159 B MET 160 n 158 MET 160 B LEU 161 n 159 LEU 161 B GLU 162 n 160 GLU 162 B MET 163 n 161 MET 163 B THR 164 n 162 THR 164 B PRO 165 n 163 PRO 165 B GLN 166 n 164 GLN 166 B ARG 167 n 165 ARG 167 B GLY 168 n 166 GLY 168 B ASP 169 n 167 ASP 169 B VAL 170 n 168 VAL 170 B TYR 171 n 169 TYR 171 B THR 172 n 170 THR 172 B CYS 173 n 171 CYS 173 B HIS 174 n 172 HIS 174 B VAL 175 n 173 VAL 175 B GLU 176 n 174 GLU 176 B HIS 177 n 175 HIS 177 B PRO 178 n 176 PRO 178 B SER 179 n 177 SER 179 B LEU 180 n 178 LEU 180 B GLN 181 n 179 GLN 181 B ASN 182 n 180 ASN 182 B PRO 183 n 181 PRO 183 B ILE 184 n 182 ILE 184 B ILE 185 n 183 ILE 185 B VAL 186 n 184 VAL 186 B GLU 187 n 185 GLU 187 B TRP 188 n 186 TRP 188 B ARG 189 n 187 ARG 189 B ALA 190 n 188 ALA 190 B GLN 191 n 189 GLN 191 B SER 192 n 190 SER 192 B LEU 1 n 1 LEU 1 C VAL 2 n 2 VAL 2 C GLU 3 n 3 GLU 3 C ALA 4 n 4 ALA 4 C LEU 5 n 5 LEU 5 C TYR 6 n 6 TYR 6 C LEU 7 n 7 LEU 7 C VAL 8 n 8 VAL 8 C CYS 9 n 9 CYS 9 C GLY 10 n 10 GLY 10 C GLU 11 n 11 GLU 11 C ARG 12 n 12 ARG 12 C GLY 13 n 13 GLY 13 C GLY 14 n 14 GLY 14 C author_and_software_defined_assembly PISA 3 trimeric 7380 -34 18680 A ASN 78 GLYCOSYLATION SITE A ASN 78 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 42 A O VAL 42 A N TYR 33 A N TYR 33 A O GLU 31 A O GLU 31 A N HIS 24 A N HIS 24 A O SER 19 A O SER 19 A N GLN 14 A N GLN 14 A N ASN 11 A N ASN 11 B O PHE 11 B O PHE 9 B N GLN 10 B N GLN 8 B O ILE 31 B O ILE 29 B N TYR 30 B N TYR 28 B O ALA 38 B O ALA 36 B N ARG 39 B N ARG 37 B O ARG 48 B O ARG 46 A N GLU 88 A N GLU 88 A O ASP 110 A O ASP 110 A N ILE 112 A N ILE 112 A O PHE 145 A O PHE 145 A O TYR 150 A O TYR 150 A N SER 133 A N SER 133 A N GLU 88 A N GLU 88 A O ASP 110 A O ASP 110 A N ILE 112 A N ILE 112 A O PHE 145 A O PHE 145 A O PHE 146 A O PHE 146 A N LEU 138 A N LEU 138 A O HIS 126 A O HIS 126 A N SER 123 A N SER 123 A N THR 120 A N THR 120 A O LYS 164 A O LYS 164 A N TYR 161 A N TYR 161 A O TRP 178 A O TRP 178 B N THR 100 B N THR 98 B O SER 118 B O SER 116 B N PHE 122 B N PHE 120 B O PHE 155 B O PHE 153 B O MET 160 B O MET 158 B N VAL 143 B N VAL 141 B N THR 100 B N THR 98 B O SER 118 B O SER 116 B N PHE 122 B N PHE 120 B O PHE 155 B O PHE 153 B O GLN 156 B O GLN 154 B N ILE 148 B N ILE 146 B O GLU 138 B O GLU 136 B N TRP 131 B N TRP 129 B N LYS 128 B N LYS 126 B O GLU 176 B O GLU 174 B N TYR 171 B N TYR 169 B O TRP 188 B O TRP 186 1 B CG ARG 105 B CG ARG 103 1 Y 1 B CD ARG 105 B CD ARG 103 1 Y 1 B NE ARG 105 B NE ARG 103 1 Y 1 B CZ ARG 105 B CZ ARG 103 1 Y 1 B NH1 ARG 105 B NH1 ARG 103 1 Y 1 B NH2 ARG 105 B NH2 ARG 103 1 Y 1 B OG1 THR 106 B OG1 THR 104 1 Y 1 B CG2 THR 106 B CG2 THR 104 1 Y 1 B CG GLU 107 B CG GLU 105 1 Y 1 B CD GLU 107 B CD GLU 105 1 Y 1 B OE1 GLU 107 B OE1 GLU 105 1 Y 1 B OE2 GLU 107 B OE2 GLU 105 1 Y 1 B CG LEU 109 B CG LEU 107 1 Y 1 B CD1 LEU 109 B CD1 LEU 107 1 Y 1 B CD2 LEU 109 B CD2 LEU 107 1 Y 1 B CG ASN 110 B CG ASN 108 1 Y 1 B OD1 ASN 110 B OD1 ASN 108 1 Y 1 B ND2 ASN 110 B ND2 ASN 108 1 Y 1 B CG HIS 111 B CG HIS 109 1 Y 1 B ND1 HIS 111 B ND1 HIS 109 1 Y 1 B CD2 HIS 111 B CD2 HIS 109 1 Y 1 B CE1 HIS 111 B CE1 HIS 109 1 Y 1 B NE2 HIS 111 B NE2 HIS 109 1 Y 1 B CG HIS 112 B CG HIS 110 1 Y 1 B ND1 HIS 112 B ND1 HIS 110 1 Y 1 B CD2 HIS 112 B CD2 HIS 110 1 Y 1 B CE1 HIS 112 B CE1 HIS 110 1 Y 1 B NE2 HIS 112 B NE2 HIS 110 1 Y 1 B ARG 105 B ARG 103 0 Y 1 B THR 106 B THR 104 0 Y 1 B GLU 107 B GLU 105 0 Y 1 B ALA 108 B ALA 106 0 Y 1 B LEU 109 B LEU 107 0 Y 1 B ASN 110 B ASN 108 0 Y 1 B HIS 111 B HIS 109 0 Y 1 B HIS 112 B HIS 110 0 Y 1 B SER 104 17.44 1 A ASP 171 0.109 SIDE CHAIN 1 A A C N PRO GLU 180 181 1.12 1 -20.26 2.70 114.20 93.94 A A A CB CG CD GLU GLU GLU 88 88 88 N 1 -29.02 1.90 123.30 94.28 A A A OD1 CG OD2 ASP ASP ASP 171 171 171 N 1 -6.29 0.90 118.30 112.01 A A A CB CG OD1 ASP ASP ASP 171 171 171 N 1 24.66 0.90 118.30 142.96 A A A CB CG OD2 ASP ASP ASP 171 171 171 N 1 -10.17 1.60 122.70 112.53 A A A O C N PRO PRO GLU 180 180 181 Y 1 -18.54 1.60 122.70 104.16 B B B O C N SER SER ARG 104 104 105 Y 1 16.40 2.50 121.70 138.10 B B B C N CA SER ARG ARG 104 105 105 Y 1 A A CG CD GLU GLU 37 37 -0.342 0.015 1.515 1.173 N 1 A A CG CD GLU GLU 88 88 0.252 0.015 1.515 1.767 N 1 A A CG CD GLN GLN 101 101 -0.140 0.023 1.506 1.366 N 1 A A CG OD1 ASP ASP 171 171 0.455 0.023 1.249 1.704 N 1 A A C N PRO GLU 180 181 -0.217 0.023 1.336 1.119 Y 1 A PHE 113 -178.08 128.46 1 A HIS 143 80.21 9.17 1 A PRO 180 -51.64 78.10 1 B ASN 19 59.65 73.21 1 B ASN 33 68.23 -99.58 1 B PRO 52 -67.32 2.26 1 B CYS 79 -53.73 -70.56 1 B THR 89 -128.77 -94.97 1 B ARG 105 104.67 -83.86 1 B THR 106 -162.80 -146.27 1 B ALA 108 64.98 116.62 1 B ASN 110 101.03 55.51 1 B HIS 111 58.29 4.90 1 B ASN 113 -33.90 167.24 1 B TYR 123 -170.07 138.27 1 B PRO 124 -67.34 -175.03 1 B ASN 134 62.06 -112.75 1 B GLN 191 70.24 72.66 23.00 0.47000 0.00000 4.06000 4.63000 0.00000 -5.10000 0.258 0.006 0.224 0.224 2.40 29.16 1765 17854 9.900 93.5 RANDOM 1016975.090 0.0000 1 THROUGHOUT 2.000 MOLECULAR REPLACEMENT FLAT MODEL 24.65 0.34 0.36 0.30 5.00 0.39 0.32 2.40 29.16 70 3201 14 0 3117 0.007 1.400 26.50 0.800 2.370 1.500 3.840 2.000 3.320 2.000 4.530 2.500 0.3440 0.021 0.3000 2.55 257 2396 6 9.70 83.70 10.9 2.4 30 1JK8 18183 0.103 1 95 1 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing AMoRE N Crystal structure of a human insulin peptide-HLA-DQ8 complex 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A LEU 45 A LEU 45 HELX_P A ARG 52 A ARG 52 1 AA1 8 A ASP 55 A ASP 55 HELX_P A SER 77 A SER 77 1 AA2 23 B GLY 54 B GLY 52 HELX_P B SER 63 B SER 61 1 AA3 10 B GLN 64 B GLN 62 HELX_P B VAL 78 B VAL 76 1 AA4 15 B VAL 78 B VAL 76 HELX_P B ARG 88 B ARG 86 1 AA5 11 B THR 89 B THR 87 HELX_P B ARG 93 B ARG 91 5 AA6 5 disulf 2.030 A CYS 107 A SG CYS 107 1_555 A CYS 163 A SG CYS 163 1_555 disulf 2.034 B CYS 15 B SG CYS 13 1_555 B CYS 79 B SG CYS 77 1_555 disulf 2.027 B CYS 117 B SG CYS 115 1_555 B CYS 173 B SG CYS 171 1_555 covale 1.447 one N-Glycosylation A ASN 78 A ND2 ASN 78 1_555 A NAG 401 D C1 NAG 1_555 IMMUNE SYSTEM HLA-DQ8, insulin B peptide, type 1 diabetes, autoimmunity, IMMUNE SYSTEM A GLY 17 A GLY 17 1 A PRO 18 A PRO 18 -0.35 A PHE 113 A PHE 113 1 A PRO 114 A PRO 114 -0.03 B TYR 123 B TYR 121 1 B PRO 124 B PRO 122 -0.50 Q5Y7H0_HUMAN UNP 1 27 Q5Y7H0 VADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNST AATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEI YDCKVEHWGLDEPLLKHWEPE O19714_HUMAN UNP 2 24 O19714 SPEDFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHN YQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLE MTPQRGDVYTCHVEHPSLQNPIIVEWRAQS 1JK8 PDB 3 1 1JK8 27 207 1JK8 2 181 Q5Y7H0 A 1 1 181 24 213 1JK8 3 192 O19714 B 2 1 190 1 14 1JK8 1 14 1JK8 C 3 1 14 1 ASP engineered mutation ALA 157 1JK8 A Q5Y7H0 UNP 183 157 8 4 4 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 40 A GLU 40 A TRP 43 A TRP 43 A ASP 29 A ASP 29 A ASP 35 A ASP 35 A SER 19 A SER 19 A PHE 26 A PHE 26 A HIS 5 A HIS 4 A GLN 14 A GLN 14 B VAL 8 B VAL 6 B THR 18 B THR 16 B ARG 23 B ARG 21 B TYR 32 B TYR 30 B GLU 35 B GLU 33 B ASP 41 B ASP 39 B TYR 47 B TYR 45 B ALA 49 B ALA 47 A GLU 88 A GLU 88 A SER 93 A SER 93 A ASN 103 A ASN 103 A ILE 112 A ILE 112 A PHE 145 A PHE 145 A PHE 153 A PHE 153 A VAL 132 A VAL 132 A GLU 134 A GLU 134 A GLU 88 A GLU 88 A SER 93 A SER 93 A ASN 103 A ASN 103 A ILE 112 A ILE 112 A PHE 145 A PHE 145 A PHE 153 A PHE 153 A LEU 138 A LEU 138 A SER 139 A SER 139 A HIS 126 A HIS 126 A VAL 128 A VAL 128 A ASN 118 A ASN 118 A SER 123 A SER 123 A TYR 161 A TYR 161 A GLU 166 A GLU 166 A LEU 174 A LEU 174 A TRP 178 A TRP 178 B THR 98 B THR 96 B PRO 103 B PRO 101 B LEU 114 B LEU 112 B PHE 122 B PHE 120 B PHE 155 B PHE 153 B GLU 162 B GLU 160 B VAL 142 B VAL 140 B SER 144 B SER 142 B THR 98 B THR 96 B PRO 103 B PRO 101 B LEU 114 B LEU 112 B PHE 122 B PHE 120 B PHE 155 B PHE 153 B GLU 162 B GLU 160 B ILE 148 B ILE 146 B ARG 149 B ARG 147 B GLN 136 B GLN 134 B GLU 138 B GLU 136 B LYS 128 B LYS 126 B ARG 133 B ARG 131 B VAL 170 B VAL 168 B GLU 176 B GLU 174 B ILE 184 B ILE 182 B ARG 189 B ARG 187 4 P 1 21 1