1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Fletcher, J.I. Swarbrick, J.D. Maksel, D. Gayler, K.R. Gooley, P.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H16 N5 O13 P3 507.181 ADENOSINE-5'-TRIPHOSPHATE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 10 205 213 10.1016/S0969-2126(02)00696-2 11839306 The structure of Ap(4)A hydrolase complexed with ATP-MgF(x) reveals the basis of substrate binding. 2002 UK J.Mol.Biol. JMOBAK 0070 0022-2836 302 1165 1177 10.1006/jmbi.2000.4085 The Three-dimensional Structure of the Nudix Enzyme Diadenosine Tetraphosphate Hydrolase from Lupinus angustifolius L 2000 10.2210/pdb1jkn/pdb pdb_00001jkn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 18834.172 diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase 3.6.1.17 1 man polymer 507.181 ADENOSINE-5'-TRIPHOSPHATE 1 syn non-polymer no no GPLGSMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWL TYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSV FAPHL GPLGSMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWL TYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSV FAPHL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n narrow-leaved blue lupine Lupinus Escherichia Escherichia coli sample 3871 Lupinus angustifolius 469008 Escherichia coli BL21(DE3) BL-21(DE3) Plasmid PGEX-6P-3 database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2002-02-27 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1F3Y contains the same protein in the free form RCSB Y RCSB 2001-07-12 REL REL ATP ADENOSINE-5'-TRIPHOSPHATE Determined using standard heteronuclear techniques structures with favorable non-bond energy, structures with the least restraint violations, target function 100 30 HNHA 3D_15N-separated_NOESY 3D_13C-separated_NOESY 2D_doubly-tuned_13C_15N-filtered_NOESY 13C-edited_13C-filtered_NOESY-HSQC 120 mM 6.5 ambient 298 K The structures are based on a total of 2948 restraints. 2649 are NOE-based distance restraints, 299 are dihedral angle restraints. torsion angle dynamics, simulated annealing 21 lowest energy 1.6 mM U-15N, U-13C Ap4A hydrolase 1.6 mM ATP 20 mM U-100% 2H imidazole 32 mM NaF 20 mM MgCl2 90% H2O/10% D2O 1.6 mM U-15N, U-13C Ap4A hydrolase 1.6 mM ATP 20 mM U-100% 2H imidazole 32 mM NaF 20 mM MgCl2 100% D2O Varian collection VNMR 6.2 Delaglio, et al. processing NMRPipe 1.1 Bartels, et al. data analysis XEASY 1.4 Guentert, et al. refinement DYANA 1.5 Brunger et al. refinement CNS 1.0 600 Varian INOVA ATP 1 2 ATP ATP 166 A GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A LEU 3 n 3 LEU 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A MET 6 n 6 MET 6 A ASP 7 n 7 ASP 7 A SER 8 n 8 SER 8 A PRO 9 n 9 PRO 9 A PRO 10 n 10 PRO 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A TYR 13 n 13 TYR 13 A ARG 14 n 14 ARG 14 A ARG 15 n 15 ARG 15 A ASN 16 n 16 ASN 16 A VAL 17 n 17 VAL 17 A GLY 18 n 18 GLY 18 A ILE 19 n 19 ILE 19 A CYS 20 n 20 CYS 20 A LEU 21 n 21 LEU 21 A MET 22 n 22 MET 22 A ASN 23 n 23 ASN 23 A ASN 24 n 24 ASN 24 A ASP 25 n 25 ASP 25 A LYS 26 n 26 LYS 26 A LYS 27 n 27 LYS 27 A ILE 28 n 28 ILE 28 A PHE 29 n 29 PHE 29 A ALA 30 n 30 ALA 30 A ALA 31 n 31 ALA 31 A SER 32 n 32 SER 32 A ARG 33 n 33 ARG 33 A LEU 34 n 34 LEU 34 A ASP 35 n 35 ASP 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A ASP 38 n 38 ASP 38 A ALA 39 n 39 ALA 39 A TRP 40 n 40 TRP 40 A GLN 41 n 41 GLN 41 A MET 42 n 42 MET 42 A PRO 43 n 43 PRO 43 A GLN 44 n 44 GLN 44 A GLY 45 n 45 GLY 45 A GLY 46 n 46 GLY 46 A ILE 47 n 47 ILE 47 A ASP 48 n 48 ASP 48 A GLU 49 n 49 GLU 49 A GLY 50 n 50 GLY 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A PRO 53 n 53 PRO 53 A ARG 54 n 54 ARG 54 A ASN 55 n 55 ASN 55 A ALA 56 n 56 ALA 56 A ALA 57 n 57 ALA 57 A ILE 58 n 58 ILE 58 A ARG 59 n 59 ARG 59 A GLU 60 n 60 GLU 60 A LEU 61 n 61 LEU 61 A ARG 62 n 62 ARG 62 A GLU 63 n 63 GLU 63 A GLU 64 n 64 GLU 64 A THR 65 n 65 THR 65 A GLY 66 n 66 GLY 66 A VAL 67 n 67 VAL 67 A THR 68 n 68 THR 68 A SER 69 n 69 SER 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A VAL 72 n 72 VAL 72 A ILE 73 n 73 ILE 73 A ALA 74 n 74 ALA 74 A GLU 75 n 75 GLU 75 A VAL 76 n 76 VAL 76 A PRO 77 n 77 PRO 77 A TYR 78 n 78 TYR 78 A TRP 79 n 79 TRP 79 A LEU 80 n 80 LEU 80 A THR 81 n 81 THR 81 A TYR 82 n 82 TYR 82 A ASP 83 n 83 ASP 83 A PHE 84 n 84 PHE 84 A PRO 85 n 85 PRO 85 A PRO 86 n 86 PRO 86 A LYS 87 n 87 LYS 87 A VAL 88 n 88 VAL 88 A ARG 89 n 89 ARG 89 A GLU 90 n 90 GLU 90 A LYS 91 n 91 LYS 91 A LEU 92 n 92 LEU 92 A ASN 93 n 93 ASN 93 A ILE 94 n 94 ILE 94 A GLN 95 n 95 GLN 95 A TRP 96 n 96 TRP 96 A GLY 97 n 97 GLY 97 A SER 98 n 98 SER 98 A ASP 99 n 99 ASP 99 A TRP 100 n 100 TRP 100 A LYS 101 n 101 LYS 101 A GLY 102 n 102 GLY 102 A GLN 103 n 103 GLN 103 A ALA 104 n 104 ALA 104 A GLN 105 n 105 GLN 105 A LYS 106 n 106 LYS 106 A TRP 107 n 107 TRP 107 A PHE 108 n 108 PHE 108 A LEU 109 n 109 LEU 109 A PHE 110 n 110 PHE 110 A LYS 111 n 111 LYS 111 A PHE 112 n 112 PHE 112 A THR 113 n 113 THR 113 A GLY 114 n 114 GLY 114 A GLN 115 n 115 GLN 115 A ASP 116 n 116 ASP 116 A GLN 117 n 117 GLN 117 A GLU 118 n 118 GLU 118 A ILE 119 n 119 ILE 119 A ASN 120 n 120 ASN 120 A LEU 121 n 121 LEU 121 A LEU 122 n 122 LEU 122 A GLY 123 n 123 GLY 123 A ASP 124 n 124 ASP 124 A GLY 125 n 125 GLY 125 A SER 126 n 126 SER 126 A GLU 127 n 127 GLU 127 A LYS 128 n 128 LYS 128 A PRO 129 n 129 PRO 129 A GLU 130 n 130 GLU 130 A PHE 131 n 131 PHE 131 A GLY 132 n 132 GLY 132 A GLU 133 n 133 GLU 133 A TRP 134 n 134 TRP 134 A SER 135 n 135 SER 135 A TRP 136 n 136 TRP 136 A VAL 137 n 137 VAL 137 A THR 138 n 138 THR 138 A PRO 139 n 139 PRO 139 A GLU 140 n 140 GLU 140 A GLN 141 n 141 GLN 141 A LEU 142 n 142 LEU 142 A ILE 143 n 143 ILE 143 A ASP 144 n 144 ASP 144 A LEU 145 n 145 LEU 145 A THR 146 n 146 THR 146 A VAL 147 n 147 VAL 147 A GLU 148 n 148 GLU 148 A PHE 149 n 149 PHE 149 A LYS 150 n 150 LYS 150 A LYS 151 n 151 LYS 151 A PRO 152 n 152 PRO 152 A VAL 153 n 153 VAL 153 A TYR 154 n 154 TYR 154 A LYS 155 n 155 LYS 155 A GLU 156 n 156 GLU 156 A VAL 157 n 157 VAL 157 A LEU 158 n 158 LEU 158 A SER 159 n 159 SER 159 A VAL 160 n 160 VAL 160 A PHE 161 n 161 PHE 161 A ALA 162 n 162 ALA 162 A PRO 163 n 163 PRO 163 A HIS 164 n 164 HIS 164 A LEU 165 n 165 LEU 165 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 74 A O ALA 74 A N LEU 109 A N LEU 109 A N PHE 108 A N PHE 108 A O GLY 18 A O GLY 18 A N VAL 17 A N VAL 17 A O GLY 45 A O GLY 45 A O ALA 74 A O ALA 74 A N LEU 109 A N LEU 109 A N PHE 108 A N PHE 108 A O GLY 18 A O GLY 18 A N ARG 14 A N ARG 14 A O GLY 102 A O GLY 102 A O GLN 105 A O GLN 105 A N LEU 80 A N LEU 80 A O GLN 41 A O GLN 41 A N ALA 31 A N ALA 31 A O SER 32 A O SER 32 A N GLY 132 A N GLY 132 1 A A O H CYS PHE 20 110 1.55 1 A A O H VAL LEU 88 92 1.58 3 A A O H CYS PHE 20 110 1.58 4 A A O H CYS PHE 20 110 1.54 5 A A H O ILE VAL 28 137 1.56 7 A A O H CYS PHE 20 110 1.58 8 A A O H GLU LYS 71 111 1.50 8 A A O H CYS PHE 20 110 1.59 8 A A O H MET TRP 6 79 1.59 9 A A O H CYS PHE 20 110 1.54 10 A A O H GLU LYS 71 111 1.49 10 A A O H CYS PHE 20 110 1.59 10 A A H O LEU GLN 80 105 1.60 11 A A O H GLU LYS 71 111 1.50 11 A A O H VAL LEU 88 92 1.59 13 A A H O LEU GLN 80 105 1.58 14 A A O H CYS PHE 20 110 1.55 15 A A O H CYS PHE 20 110 1.57 16 A A O H CYS PHE 20 110 1.60 18 A A O H GLU LYS 71 111 1.49 18 A A O H CYS PHE 20 110 1.60 19 A A O H CYS PHE 20 110 1.57 20 A A O H CYS PHE 20 110 1.57 21 A A O H GLU LYS 71 111 1.50 22 A A O H GLU LYS 71 111 1.49 22 A A H O ILE VAL 28 137 1.54 22 A A O H CYS PHE 20 110 1.58 24 A A O H GLU LYS 71 111 1.51 24 A A H O ILE VAL 28 137 1.56 26 A A O H CYS PHE 20 110 1.58 27 A A O H CYS PHE 20 110 1.58 30 A A H O ILE VAL 28 137 1.57 30 A A O H CYS PHE 20 110 1.59 1 A MET 6 -174.88 111.97 1 A SER 8 -177.61 137.50 1 A LYS 26 80.99 24.86 1 A PHE 29 -59.75 107.97 1 A ILE 47 51.95 159.63 1 A GLU 49 -55.59 99.28 1 A ASP 99 -112.89 75.45 1 A ASP 124 -92.88 38.74 2 A SER 5 -171.06 121.71 2 A SER 8 174.64 130.73 2 A LYS 26 81.74 24.77 2 A PHE 29 -57.79 109.58 2 A ASP 99 -109.75 64.22 2 A ASP 124 -91.76 38.72 3 A SER 5 -108.08 -155.59 3 A MET 6 -148.07 -40.33 3 A SER 8 171.88 131.70 3 A PHE 29 -53.71 108.61 3 A GLU 49 -55.19 98.07 3 A ASP 116 -48.97 -17.49 3 A ASP 124 -93.92 38.83 3 A SER 126 -102.24 -62.34 3 A PRO 129 -51.69 -176.87 3 A GLU 130 -150.10 -41.97 3 A LYS 150 -145.99 16.28 4 A LEU 3 60.18 -178.53 4 A SER 5 -173.14 124.37 4 A MET 6 -133.04 -38.31 4 A SER 8 174.33 138.98 4 A PHE 29 -56.45 109.58 4 A GLU 49 -53.60 98.09 4 A ASP 99 -109.75 65.23 4 A ASP 116 -49.85 -16.69 4 A ASP 124 -93.75 38.96 4 A SER 126 -121.36 -68.28 4 A PRO 129 -48.44 165.34 4 A GLU 130 -150.05 -45.68 5 A SER 5 -179.57 125.66 5 A MET 6 -150.89 -24.70 5 A ASP 7 77.57 43.31 5 A SER 8 -177.85 121.54 5 A GLU 49 -67.26 98.74 5 A ASP 99 -108.34 73.82 5 A ASP 124 -91.98 38.97 5 A SER 126 -121.15 -69.96 6 A PRO 2 -69.89 -168.73 6 A LEU 3 63.41 124.64 6 A SER 5 -124.13 -156.72 6 A MET 6 -142.66 -33.65 6 A SER 8 178.24 125.64 6 A GLU 49 -49.15 99.63 6 A ASP 124 -89.47 38.70 6 A SER 126 -100.98 -64.12 7 A PRO 2 -69.49 -168.49 7 A LEU 3 60.10 -178.78 7 A SER 8 174.94 121.71 7 A PHE 29 -55.28 107.82 7 A ILE 47 51.26 157.75 7 A GLU 49 -65.71 98.24 7 A ASP 99 -109.63 48.60 7 A ASP 116 -49.93 -16.72 7 A ASP 124 -94.39 38.83 7 A SER 126 -106.00 -64.28 7 A PRO 129 -49.23 179.17 7 A GLU 130 -148.39 -44.74 8 A PRO 2 -70.31 -167.52 8 A LEU 3 61.82 161.14 8 A SER 8 177.62 128.63 8 A GLU 49 -50.09 99.56 8 A ASP 116 -49.84 -16.69 8 A ASP 124 -90.96 38.66 8 A LYS 150 -150.07 13.98 9 A LEU 3 -176.55 145.40 9 A SER 5 -125.89 -154.84 9 A MET 6 -131.20 -44.33 9 A SER 8 170.32 119.23 9 A ASP 38 80.65 2.70 9 A GLU 49 -51.25 98.93 9 A ASP 99 -109.57 63.06 9 A ASP 116 -49.95 -16.47 9 A ASP 124 -91.11 38.97 9 A SER 126 -121.21 -69.64 10 A LEU 3 60.11 -177.76 10 A SER 5 -137.91 -158.75 10 A MET 6 -148.11 -32.94 10 A SER 8 169.39 143.13 10 A PRO 9 -59.63 107.69 10 A PRO 10 -66.18 -155.35 10 A GLU 11 -29.84 -145.67 10 A PHE 29 -58.13 104.40 10 A GLU 49 -51.78 99.01 10 A ASP 99 -116.27 77.57 10 A ASP 116 -49.87 -16.83 10 A ASP 124 -91.81 38.75 11 A PRO 2 -70.08 -167.99 11 A LEU 3 -59.31 -170.49 11 A MET 6 178.94 111.66 11 A SER 8 -176.09 132.45 11 A ASP 38 80.61 0.93 11 A GLU 49 -52.47 99.23 11 A ASP 116 -49.73 -16.80 11 A ASP 124 -93.31 38.82 12 A LEU 3 -57.48 178.43 12 A SER 5 -179.14 125.43 12 A SER 8 176.31 133.91 12 A ASP 99 -118.43 64.28 12 A ASP 116 -49.83 -16.65 12 A ASP 124 -90.00 38.65 13 A PRO 2 -69.86 -167.63 13 A LEU 3 -58.86 88.45 13 A MET 6 -168.24 108.46 13 A ASN 24 -49.08 -19.24 13 A GLU 49 -50.44 98.67 13 A ASP 116 -49.33 -17.13 13 A ASP 124 -90.19 38.72 14 A SER 5 64.08 125.85 14 A SER 8 173.10 119.32 14 A PHE 29 -54.73 108.36 14 A ASP 116 -49.50 -16.92 14 A ASP 124 -90.25 38.75 15 A SER 5 -138.29 -159.82 15 A PRO 10 -65.47 -171.11 15 A PHE 29 -58.52 108.83 15 A ASP 35 -148.07 -7.51 15 A ASP 38 80.89 1.40 15 A ASP 99 -108.36 71.99 15 A ASP 124 -92.29 39.01 15 A SER 126 -121.83 -64.18 15 A GLU 130 -144.21 -44.75 15 A LYS 150 -151.80 14.35 16 A PRO 2 -69.98 -177.93 16 A MET 6 -130.83 -36.94 16 A SER 8 170.51 137.51 16 A ASP 124 -90.64 38.73 16 A SER 126 -107.11 -65.16 16 A PRO 129 -48.17 177.36 16 A GLU 130 -150.07 -44.75 16 A LYS 150 -147.51 17.36 17 A PRO 2 -69.93 -173.16 17 A LEU 3 -112.53 79.80 17 A SER 8 171.30 136.21 17 A PHE 29 -52.25 107.55 17 A GLU 49 -52.63 97.94 17 A ASP 116 -49.61 -16.90 17 A ASP 124 -95.60 39.07 17 A SER 126 -120.88 -70.26 18 A LEU 3 -175.55 94.09 18 A SER 5 -172.49 124.10 18 A MET 6 -132.59 -31.87 18 A SER 8 176.33 140.50 18 A PHE 29 -50.82 107.56 18 A ASP 99 -105.98 69.51 18 A ASP 124 -91.53 38.79 18 A SER 126 -108.85 -66.26 19 A SER 5 -174.24 123.07 19 A MET 6 -134.72 -31.94 19 A SER 8 173.67 133.98 19 A GLU 49 -48.16 99.71 19 A ASP 124 -90.79 38.93 19 A SER 126 -120.62 -70.84 19 A PRO 129 -45.94 160.48 19 A GLU 130 -150.19 -46.05 19 A LYS 150 -149.75 12.91 20 A LEU 3 61.13 155.93 20 A SER 5 -130.96 -155.08 20 A SER 8 170.06 128.22 20 A PHE 29 -58.43 109.62 20 A GLU 49 -52.59 98.82 20 A ASP 116 -49.30 -17.04 20 A ASP 124 -89.79 38.65 20 A SER 126 -109.34 -64.04 20 A PRO 129 -48.84 176.27 20 A GLU 130 -150.14 -44.51 21 A SER 8 170.10 138.07 21 A PHE 29 -58.56 109.73 21 A GLU 49 -50.96 98.67 21 A ASP 116 -49.47 -16.96 21 A ASP 124 -89.64 38.64 21 A SER 126 -107.02 -64.27 21 A PRO 129 -49.34 176.69 21 A GLU 130 -150.13 -45.24 21 A LYS 150 -140.25 11.04 22 A LEU 3 59.97 99.40 22 A SER 5 63.77 125.30 22 A ASP 116 -48.96 -17.45 22 A ASP 124 -89.61 38.84 22 A SER 126 -109.95 -64.32 22 A PRO 129 -49.16 169.17 22 A GLU 130 -150.07 -45.20 23 A SER 5 164.90 139.83 23 A SER 8 167.68 141.73 23 A LYS 26 81.77 24.60 23 A PHE 29 -54.04 107.56 23 A ASP 116 -49.09 -17.35 23 A ILE 119 -69.97 94.91 23 A ASP 124 -89.52 38.77 23 A SER 126 -103.23 -64.63 24 A PRO 2 -55.18 -168.28 24 A LEU 3 -61.57 84.93 24 A SER 8 172.98 130.60 24 A GLU 49 -53.09 99.61 24 A VAL 67 -56.71 108.43 24 A ASP 116 -49.01 -17.47 24 A ASP 124 -93.70 38.80 24 A LYS 150 -152.75 15.24 25 A PRO 2 -68.53 -167.77 25 A SER 8 172.91 130.60 25 A PHE 29 -57.19 109.58 25 A GLU 49 -51.13 98.96 25 A ASP 116 -49.75 -16.67 25 A ASP 124 -92.27 38.84 25 A PRO 129 -50.00 177.91 25 A GLU 130 -150.07 -45.18 26 A SER 5 178.59 127.03 26 A MET 6 -140.32 -27.46 26 A SER 8 178.99 140.99 26 A ASP 99 -118.08 77.89 26 A ASP 124 -90.72 38.74 27 A PRO 2 -69.79 -178.51 27 A LEU 3 -63.75 86.31 27 A SER 5 173.62 128.74 27 A SER 8 173.87 142.40 27 A GLU 49 -50.73 99.25 27 A ASP 99 -109.63 74.12 27 A ASP 124 -92.44 38.79 27 A PRO 129 -48.42 176.36 27 A GLU 130 -150.04 -44.85 28 A LEU 3 -175.63 87.54 28 A SER 5 171.79 129.21 28 A SER 8 172.86 132.97 28 A PHE 29 -56.06 109.40 28 A GLU 49 -51.44 98.65 28 A ASP 124 -93.44 38.86 28 A PRO 129 -46.18 162.52 28 A GLU 130 -149.95 -44.40 28 A LYS 150 -143.93 -26.11 29 A LEU 3 61.66 114.59 29 A SER 5 171.52 129.95 29 A MET 6 -130.43 -35.52 29 A SER 8 168.62 139.77 29 A ASP 38 80.06 1.78 29 A GLU 49 -51.69 98.59 29 A ASP 99 -110.56 72.34 29 A ASP 116 -49.82 -16.68 29 A ASP 124 -92.53 39.01 29 A PRO 129 -47.13 162.10 29 A GLU 130 -150.05 -46.68 30 A PRO 2 -69.66 -168.78 30 A LEU 3 -161.46 42.42 30 A SER 8 174.45 136.87 30 A PRO 43 -39.55 132.88 30 A GLU 49 -49.22 96.98 30 A ASP 99 -114.52 77.03 30 A ASP 116 -49.47 -16.92 30 A ASP 124 -90.71 38.85 30 A SER 126 -121.78 -71.89 Solution Structure of the Nudix Enzyme Diadenosine Tetraphosphate Hydrolase from Lupinus angustifolius Complexed with ATP 1 N N 2 N N A ASP 52 A ASP 52 HELX_P A THR 65 A THR 65 1 1 14 A PRO 85 A PRO 85 HELX_P A TRP 96 A TRP 96 1 2 12 A GLU 140 A GLU 140 HELX_P A THR 146 A THR 146 1 3 7 A VAL 147 A VAL 147 HELX_P A PHE 149 A PHE 149 5 4 3 A LYS 150 A LYS 150 HELX_P A PHE 161 A PHE 161 1 5 12 A ALA 162 A ALA 162 HELX_P A LEU 165 A LEU 165 5 6 4 HYDROLASE alpha-beta-alpha sandwich, enzyme-substrate complex, HYDROLASE O04841_LUPAN UNP 1 40 O04841 MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFP PKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 40 199 1JKN 6 165 O04841 A 1 6 165 1 cloning artifact GLY 1 1JKN A O04841 UNP 1 1 cloning artifact PRO 2 1JKN A O04841 UNP 2 1 cloning artifact LEU 3 1JKN A O04841 UNP 3 1 cloning artifact GLY 4 1JKN A O04841 UNP 4 1 cloning artifact SER 5 1JKN A O04841 UNP 5 4 5 3 anti-parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel A ALA 70 A ALA 70 A GLU 75 A GLU 75 A PHE 108 A PHE 108 A PHE 112 A PHE 112 A TYR 13 A TYR 13 A MET 22 A MET 22 A GLN 44 A GLN 44 A GLY 45 A GLY 45 A ALA 70 A ALA 70 A GLU 75 A GLU 75 A PHE 108 A PHE 108 A PHE 112 A PHE 112 A TYR 13 A TYR 13 A MET 22 A MET 22 A GLY 102 A GLY 102 A GLN 105 A GLN 105 A LEU 80 A LEU 80 A ASP 83 A ASP 83 A TRP 40 A TRP 40 A GLN 41 A GLN 41 A ILE 28 A ILE 28 A ARG 33 A ARG 33 A PHE 131 A PHE 131 A VAL 137 A VAL 137 BINDING SITE FOR RESIDUE ATP A 166 A ATP 166 Software 13 A ASN 16 A ASN 16 13 1_555 A ARG 33 A ARG 33 13 1_555 A GLN 41 A GLN 41 13 1_555 A GLN 44 A GLN 44 13 1_555 A TYR 82 A TYR 82 13 1_555 A PHE 84 A PHE 84 13 1_555 A VAL 88 A VAL 88 13 1_555 A LYS 91 A LYS 91 13 1_555 A TRP 96 A TRP 96 13 1_555 A GLN 103 A GLN 103 13 1_555 A VAL 147 A VAL 147 13 1_555 A PHE 149 A PHE 149 13 1_555 A LYS 150 A LYS 150 13 1_555