0.011715 0.000000 0.000000 0.000000 0.012263 0.000000 0.000000 0.000000 0.022031 0.00000 0.00000 0.00000 Chiu, T.K. Sohn, C. Johnson, R.C. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 85.362 81.543 45.390 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N O N 59 N P N 60 N O N 61 N O N 62 N O N 63 N C N 64 R C N 65 N O N 66 S C N 67 N O N 68 N C N 69 R C Y 70 N N Y 71 N C Y 72 N N Y 73 N C Y 74 N C N 75 N N Y 76 N N Y 77 N C Y 78 N N Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N O N 95 N P N 96 N O N 97 N O N 98 N O N 99 N C N 100 R C N 101 N O N 102 S C N 103 N O N 104 N C N 105 R C N 106 N N N 107 N C N 108 N O N 109 N N N 110 N C N 111 N N N 112 N C N 113 N C N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N O N 129 N P N 130 N O N 131 N O N 132 N O N 133 N C N 134 R C N 135 N O N 136 S C N 137 N O N 138 N C N 139 R C Y 140 N N Y 141 N C Y 142 N N Y 143 N C N 144 N C N 145 N O N 146 N N N 147 N C N 148 N N N 149 N N Y 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N P N 167 N O N 168 N O N 169 N O N 170 N C N 171 R C N 172 N O N 173 S C N 174 N O N 175 N C N 176 R C N 177 N N N 178 N C N 179 N O N 180 N N N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N O N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N O N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 N C N 242 N C N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N N Y 257 N C Y 258 N C Y 259 N N N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N O N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 S C N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N C N 325 N C N 326 N N N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N S N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N C N 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 R C N 422 N O N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N C Y 444 N C N 445 N O N 446 N O N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C N 463 N C N 464 N C N 465 N O N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing Y 78 N sing Y 79 N sing Y 80 N doub N 81 N sing Y 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing N 88 N sing Y 89 N sing Y 90 N doub N 91 N sing Y 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N sing Y 262 N doub Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing Y 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub N 374 N sing Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing Y 438 N doub Y 439 N sing Y 440 N sing N 441 N sing Y 442 N doub N 443 N sing Y 444 N doub N 445 N sing Y 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N doub N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing UK EMBO J. EMJODG 0897 0261-4189 21 801 814 10.1093/emboj/21.4.801 11847127 Testing water-mediated DNA recognition by the Hin recombinase. 2002 Thesis 145 241 How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase 2001 US Science SCIEAS 0038 0036-8075 263 348 355 Hin Recombinase Bound to DNA: The Origin of Specificity in Major and Minor Groove Interactions 1994 10.2210/pdb1jkp/pdb pdb_00001jkp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE 1997-09-01 MAR scanner 300 mm plate MOLECULAR REPLACEMENT WITH 1IJW HAVING THE PROPER DNA SUBSTITUTIONS AS THE STARTING MODEL. M x-ray 1 1.100 1.0 X25 NSLS 1.100 SYNCHROTRON NSLS BEAMLINE X25 4349.850 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*GP*AP*AP*GP*A)-3' 1 syn polymer 4207.781 5'-D(*AP*TP*CP*TP*TP*CP*TP*CP*AP*AP*AP*AP*AP*C)-3' 1 syn polymer 6047.051 DNA-INVERTASE HIN RESIDUES 139 TO 190 1 syn polymer 18.015 water 4 nat water Hin Recombinase no no (DT)(DG)(DT)(DT)(DT)(DT)(DT)(DG)(DA)(DG)(DA)(DA)(DG)(DA) TGTTTTTGAGAAGA A polydeoxyribonucleotide no no (DA)(DT)(DC)(DT)(DT)(DC)(DT)(DC)(DA)(DA)(DA)(DA)(DA)(DC) ATCTTCTCAAAAAC B polydeoxyribonucleotide no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.72 53.11 VAPOR DIFFUSION, HANGING DROP 8.50 HANGING DROP VAPOR DIFFUSION AT 4C, WITH INITIAL CONCENTRATION IN DROP OF 0.10 MM DNA, 0.06 MM HIN, 10 MM TRIS (PH 8.5), 5 MM CACL2, 23 MM NACL, 2.5% V/V PEG400, AND 1.56 MM NA CACODYLATE. RESERVOIR SOLUTION CONTAINS 100 MM TRIS (PH 8.5), 50 MM CACL2, 100 MM NACL, AND 25% PEG400. CONCENTRATION OF PEG400 IN RESERVOIR SOLUTION WAS INCREASED IN 5% INCREMENTS TO 35%., pH 8.50, VAPOR DIFFUSION, HANGING DROP DNA 1 HIN 1 TRIS 1 CaCl2 1 NaCl 1 PEG 400 1 sodium cacodylate 1 Tris 2 CaCl2 2 NaCl 2 PEG 400 2 -24.888 1 19 A 3 B 29 1.954 A_DG3:DC29_B 1 3.201 -1.004 -1.080 0.126 -2.068 1 20 A 4 B 28 -11.801 A_DT4:DA28_B 2 -1.841 0.135 -0.208 0.325 2.794 1 20 A 5 B 27 5.632 A_DT5:DA27_B 3 -15.904 0.019 -0.427 0.231 1.767 1 20 A 6 B 26 -2.332 A_DT6:DA26_B 4 -25.202 0.044 -0.422 0.209 -3.868 1 20 A 7 B 25 -2.292 A_DT7:DA25_B 5 -3.381 -0.141 -0.072 -0.283 -11.429 1 20 A 8 B 24 -0.134 A_DT8:DA24_B 6 -14.217 -0.684 0.209 -0.044 -2.440 1 19 A 9 B 23 7.605 A_DG9:DC23_B 7 2.025 -1.376 -0.331 -0.372 7.788 1 20 A 10 B 22 0.493 A_DA10:DT22_B 8 -12.190 -0.273 0.332 -0.272 -2.004 1 19 A 11 B 21 0.074 A_DG11:DC21_B 9 -7.363 -0.254 0.058 -0.446 -4.812 1 20 A 12 B 20 -2.061 A_DA12:DT20_B 10 -12.039 -0.142 -0.045 -0.345 6.224 1 20 A 13 B 19 0.022 A_DA13:DT19_B 11 -4.443 0.890 0.362 0.091 0.012 1 19 A 14 B 18 -0.295 A_DG14:DC18_B 12 -1.999 -0.659 0.198 -0.171 3.010 38.600 A A 3 4 10.209 B B 29 28 2.854 6.681 -1.380 -0.013 AA_DG3DT4:DA28DC29_BB 1 -7.086 10.827 37.397 -0.772 1.291 3.122 29.363 A A 4 5 1.126 B B 28 27 3.089 0.568 0.511 -0.400 AA_DT4DT5:DA27DA28_BB 2 5.216 -10.343 28.901 -0.906 0.066 3.175 34.770 A A 5 6 13.363 B B 27 26 3.212 7.904 -0.238 0.392 AA_DT5DT6:DA26DA27_BB 3 3.833 -6.480 33.675 -0.541 0.978 3.322 39.921 A A 6 7 -7.003 B B 26 25 3.371 -4.770 1.233 0.510 AA_DT6DT7:DA25DA26_BB 4 1.094 -1.607 39.632 1.310 -1.676 3.442 29.582 A A 7 8 0.801 B B 25 24 3.461 0.409 -0.415 -0.586 AA_DT7DT8:DA24DA25_BB 5 0.680 -1.331 29.572 -1.239 0.965 3.456 35.772 A A 8 9 3.755 B B 24 23 3.204 2.292 1.228 1.400 AA_DT8DG9:DC23DA24_BB 6 6.801 -11.144 35.067 1.940 -0.992 3.253 42.961 A A 9 10 9.648 B B 23 22 3.001 7.012 -0.975 1.151 AA_DG9DA10:DT22DC23_BB 7 -6.536 8.993 41.928 0.898 0.704 3.666 31.795 A A 10 11 3.975 B B 22 21 3.668 2.176 0.356 0.085 AA_DA10DG11:DC21DT22_BB 8 0.037 -0.067 31.722 -0.292 -0.642 3.310 39.576 A A 11 12 4.123 B B 21 20 3.277 2.786 -0.632 -0.018 AA_DG11DA12:DT20DC21_BB 9 -3.473 5.140 39.334 -0.356 0.522 2.834 37.122 A A 12 13 -4.164 B B 20 19 2.860 -2.646 0.081 0.018 AA_DA12DA13:DT19DT20_BB 10 -3.311 5.212 36.887 0.336 -0.513 3.088 27.042 A A 13 14 14.615 B B 19 18 3.457 6.759 -0.348 -1.134 AA_DA13DG14:DC18DT19_BB 11 -1.838 3.974 26.135 -4.174 0.268 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 2002-02-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession Native wild-type Hin recombinase DNA-binding domain bound to underivatized hixL half-site. FORM1 BR18 DERIVATIVE FORM1 I5 DERIVATIVE FORM2 I4 DERIVATIVE FORM1 A10G MUTANT FORM1 G9T MUTANT FORM1 T11C MUTANT RCSB Y RCSB 2001-07-13 REL REL HOH water SYNTHETIC PEPTIDE sample 1IJW PDB experimental model HOH 201 4 HOH HOH 201 A HOH 202 4 HOH HOH 202 B HOH 203 4 HOH HOH 203 B HOH 204 4 HOH HOH 204 B T 2 n 1 DT 2 A G 3 n 2 DG 3 A T 4 n 3 DT 4 A T 5 n 4 DT 5 A T 6 n 5 DT 6 A T 7 n 6 DT 7 A T 8 n 7 DT 8 A G 9 n 8 DG 9 A A 10 n 9 DA 10 A G 11 n 10 DG 11 A A 12 n 11 DA 12 A A 13 n 12 DA 13 A G 14 n 13 DG 14 A A 15 n 14 DA 15 A A 16 n 1 DA 16 B T 17 n 2 DT 17 B C 18 n 3 DC 18 B T 19 n 4 DT 19 B T 20 n 5 DT 20 B C 21 n 6 DC 21 B T 22 n 7 DT 22 B C 23 n 8 DC 23 B A 24 n 9 DA 24 B A 25 n 10 DA 25 B A 26 n 11 DA 26 B A 27 n 12 DA 27 B A 28 n 13 DA 28 B C 29 n 14 DC 29 B GLY 139 n 1 GLY 139 C ARG 140 n 2 ARG 140 C PRO 141 n 3 PRO 141 C ARG 142 n 4 ARG 142 C ALA 143 n 5 ALA 143 C ILE 144 n 6 ILE 144 C ASN 145 n 7 ASN 145 C LYS 146 n 8 LYS 146 C HIS 147 n 9 HIS 147 C GLU 148 n 10 GLU 148 C GLN 149 n 11 GLN 149 C GLU 150 n 12 GLU 150 C GLN 151 n 13 GLN 151 C ILE 152 n 14 ILE 152 C SER 153 n 15 SER 153 C ARG 154 n 16 ARG 154 C LEU 155 n 17 LEU 155 C LEU 156 n 18 LEU 156 C GLU 157 n 19 GLU 157 C LYS 158 n 20 LYS 158 C GLY 159 n 21 GLY 159 C HIS 160 n 22 HIS 160 C PRO 161 n 23 PRO 161 C ARG 162 n 24 ARG 162 C GLN 163 n 25 GLN 163 C GLN 164 n 26 GLN 164 C LEU 165 n 27 LEU 165 C ALA 166 n 28 ALA 166 C ILE 167 n 29 ILE 167 C ILE 168 n 30 ILE 168 C PHE 169 n 31 PHE 169 C GLY 170 n 32 GLY 170 C ILE 171 n 33 ILE 171 C GLY 172 n 34 GLY 172 C VAL 173 n 35 VAL 173 C SER 174 n 36 SER 174 C THR 175 n 37 THR 175 C LEU 176 n 38 LEU 176 C TYR 177 n 39 TYR 177 C ARG 178 n 40 ARG 178 C TYR 179 n 41 TYR 179 C PHE 180 n 42 PHE 180 C PRO 181 n 43 PRO 181 C ALA 182 n 44 ALA 182 C SER 183 n 45 SER 183 C SER 184 n 46 SER 184 C ILE 185 n 47 ILE 185 C n 48 186 C n 49 187 C n 50 188 C n 51 189 C n 52 190 C author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 C CG GLU 157 C CG GLU 19 1 Y 1 C CD GLU 157 C CD GLU 19 1 Y 1 C OE1 GLU 157 C OE1 GLU 19 1 Y 1 C OE2 GLU 157 C OE2 GLU 19 1 Y 1 C CG GLN 164 C CG GLN 26 1 Y 1 C CD GLN 164 C CD GLN 26 1 Y 1 C OE1 GLN 164 C OE1 GLN 26 1 Y 1 C NE2 GLN 164 C NE2 GLN 26 1 Y 1 C LYS 186 C LYS 48 1 Y 1 C LYS 187 C LYS 49 1 Y 1 C ARG 188 C ARG 50 1 Y 1 C MET 189 C MET 51 1 Y 1 C ASN 190 C ASN 52 1 Y 1 A DA 15 0.090 SIDE CHAIN 1 B DA 28 0.093 SIDE CHAIN 1 11.79 1.20 115.70 127.49 B B B C5' C4' C3' DA DA DA 16 16 16 A N 1 -17.17 2.00 110.40 93.23 C C C CB CA C ARG ARG ARG 178 178 178 B N 1 C PHE 169 -68.33 9.66 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP 54.10 12.54 0.00000 0.00000 12.184 0.00000 -24.724 0.3277000 0.2477000 0.2477000 2.80 42.70 402 3774 9.72 91.23 RANDOM 1 ANISOTROPIC_FIXED_ISOTROPIC 0.000 MOLECULAR REPLACEMENT 1IJW MLF 50.00 0.20 0.60 0.42 5.00 0.71 0.62 2.80 42.70 4 959 0 576 379 0.009 1.364 19.085 1.600 6.93 4.000 10.27 6.000 10.70 6.000 15.19 7.000 0.5012000 0.4163000 2.93 53 338 8 10.35 76.37 43.00 2.80 42.70 1JKP 3774 0.000 0.0770000 1 16.90 13.00 91.23 2.80 2.93 4.06 0.2180000 3.00 76.37 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 1 N N 2 N N 3 N N 4 N N 4 N N C ASN 145 C ASN 7 HELX_P C LYS 158 C LYS 20 1 1 14 C PRO 161 C PRO 23 HELX_P C PHE 169 C PHE 31 1 2 9 C GLY 172 C GLY 34 HELX_P C PHE 180 C PHE 42 1 3 9 hydrog WATSON-CRICK A DG 3 A N1 DG 2 1_555 B DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 2 1_555 B DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 2 1_555 B DC 29 B N4 DC 14 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 3 1_555 B DA 28 B N1 DA 13 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 3 1_555 B DA 28 B N6 DA 13 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 4 1_555 B DA 27 B N1 DA 12 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 4 1_555 B DA 27 B N6 DA 12 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 5 1_555 B DA 26 B N1 DA 11 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 5 1_555 B DA 26 B N6 DA 11 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 6 1_555 B DA 25 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 6 1_555 B DA 25 B N6 DA 10 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 7 1_555 B DA 24 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 7 1_555 B DA 24 B N6 DA 9 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 8 1_555 B DC 23 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 8 1_555 B DC 23 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 8 1_555 B DC 23 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 9 1_555 B DT 22 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 9 1_555 B DT 22 B O4 DT 7 1_555 hydrog WATSON-CRICK A DG 11 A N1 DG 10 1_555 B DC 21 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 11 A N2 DG 10 1_555 B DC 21 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 11 A O6 DG 10 1_555 B DC 21 B N4 DC 6 1_555 hydrog WATSON-CRICK A DA 12 A N1 DA 11 1_555 B DT 20 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 12 A N6 DA 11 1_555 B DT 20 B O4 DT 5 1_555 hydrog WATSON-CRICK A DA 13 A N1 DA 12 1_555 B DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 13 A N6 DA 12 1_555 B DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK A DG 14 A N1 DG 13 1_555 B DC 18 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A N2 DG 13 1_555 B DC 18 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A O6 DG 13 1_555 B DC 18 B N4 DC 3 1_555 DNA BINDING PROTEIN/DNA WATER-MEDIATED RECOGNITION, PROTEIN-DNA COMPLEX, HIN RECOMBINASE, T11G MUTANT, DNA BINDING PROTEIN-DNA COMPLEX HIN_SALTY UNP 3 139 P03013 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN 1JKP PDB 1 1JKP 1JKP PDB 2 1JKP 139 190 1JKP 139 190 P03013 C 1 1 52 2 15 1JKP 2 15 1JKP A 2 1 14 16 29 1JKP 16 29 1JKP B 3 1 14 20 C 2 2 21