0.011743 0.000000 0.000000 0.000000 0.012098 0.000000 0.000000 0.000000 0.022161 0.00000 0.00000 0.00000 Chiu, T.K. Sohn, C. Johnson, R.C. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 85.158 82.656 45.124 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N O N 59 N P N 60 N O N 61 N O N 62 N O N 63 N C N 64 R C N 65 N O N 66 S C N 67 N O N 68 N C N 69 R C Y 70 N N Y 71 N C Y 72 N N Y 73 N C Y 74 N C N 75 N N Y 76 N N Y 77 N C Y 78 N N Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N O N 95 N P N 96 N O N 97 N O N 98 N O N 99 N C N 100 R C N 101 N O N 102 S C N 103 N O N 104 N C N 105 R C N 106 N N N 107 N C N 108 N O N 109 N N N 110 N C N 111 N N N 112 N C N 113 N C N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N O N 129 N P N 130 N O N 131 N O N 132 N O N 133 N C N 134 R C N 135 N O N 136 S C N 137 N O N 138 N C N 139 R C Y 140 N N Y 141 N C Y 142 N N Y 143 N C N 144 N C N 145 N O N 146 N N N 147 N C N 148 N N N 149 N N Y 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N P N 167 N O N 168 N O N 169 N O N 170 N C N 171 R C N 172 N O N 173 S C N 174 N O N 175 N C N 176 R C N 177 N N N 178 N C N 179 N O N 180 N N N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N O N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N O N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 N C N 242 N C N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N N Y 257 N C Y 258 N C Y 259 N N N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 S C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N C N 322 N C N 323 N N N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N C N 346 N S N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C N 405 N O N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 R C N 419 N O N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C N 460 N C N 461 N C N 462 N O N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing Y 78 N sing Y 79 N sing Y 80 N doub N 81 N sing Y 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing N 88 N sing Y 89 N sing Y 90 N doub N 91 N sing Y 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N sing Y 262 N doub Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing Y 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N doub N 372 N sing Y 373 N doub N 374 N sing Y 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing Y 436 N doub Y 437 N sing Y 438 N sing N 439 N sing Y 440 N doub N 441 N sing Y 442 N doub N 443 N sing Y 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing UK EMBO J. EMJODG 0897 0261-4189 21 801 814 10.1093/emboj/21.4.801 11847127 Testing water-mediated DNA recognition by the Hin recombinase. 2002 Thesis 145 241 How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase 2001 US Science SCIEAS 0038 0036-8075 263 348 355 Hin Recombinase Bound to DNA: The Origin of Specificity in Major and Minor Groove Interactions 1994 10.2210/pdb1jkq/pdb pdb_00001jkq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE 1997-09-01 MAR scanner 300 mm plate MOLECULAR REPLACEMENT WITH 1IJW HAVING THE PROPER DNA SUBSTITUTIONS AS THE STARTING MODEL. M x-ray 1 1.100 1.0 X25 NSLS 1.100 SYNCHROTRON NSLS BEAMLINE X25 4299.824 5'-D(*TP*GP*TP*TP*TP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3' 1 syn polymer 4255.831 5'-D(*AP*TP*CP*TP*TP*AP*TP*AP*AP*AP*AP*AP*AP*C)-3' 1 syn polymer 6047.051 DNA-INVERTASE HIN RESIDUES 139 TO 190 1 syn polymer Hin Recombinase no no (DT)(DG)(DT)(DT)(DT)(DT)(DT)(DT)(DA)(DT)(DA)(DA)(DG)(DA) TGTTTTTTATAAGA A polydeoxyribonucleotide no no (DA)(DT)(DC)(DT)(DT)(DA)(DT)(DA)(DA)(DA)(DA)(DA)(DA)(DC) ATCTTATAAAAAAC B polydeoxyribonucleotide no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.74 53.36 VAPOR DIFFUSION, HANGING DROP 8.50 HANGING DROP VAPOR DIFFUSION AT 4C, WITH INITIAL CONCENTRATION IN DROP OF 0.10 MM DNA, 0.06 MM HIN, 20 MM HEPES (PH 7.5), 20 MM CACL2, 33 MM NACL, 5.0% V/V PEG400, AND 1.56 MM NA CACODYLATE. RESERVOIR SOLUTION CONTAINS 100 MM HEPES (PH 7.5), 100 MM CACL2, 100 MM NACL, AND 25% PEG400. CONCENTRATION OF PEG400 IN RESERVOIR SOLUTION WAS INCREASED IN 5% INCREMENTS TO 35%., pH 8.50, VAPOR DIFFUSION, HANGING DROP DNA 1 HIN 1 HEPES 1 CaCl2 1 NaCl 1 PEG 400 1 sodium cacodylate 1 HEPES 2 CaCl2 2 NaCl 2 PEG 400 2 -16.587 1 19 A 3 B 29 -5.900 A_DG3:DC29_B 1 10.262 0.197 -0.685 -0.183 3.843 1 20 A 4 B 28 1.897 A_DT4:DA28_B 2 -9.287 -0.225 -0.136 -0.271 -2.395 1 20 A 5 B 27 -0.292 A_DT5:DA27_B 3 -15.104 -1.285 -0.100 -0.008 -2.456 1 20 A 6 B 26 -3.330 A_DT6:DA26_B 4 -20.791 0.204 -0.119 -0.257 -2.549 1 20 A 7 B 25 -6.358 A_DT7:DA25_B 5 0.872 -1.658 -0.415 -0.248 -5.122 1 20 A 8 B 24 4.583 A_DT8:DA24_B 6 -8.877 -1.209 -0.128 0.155 -1.754 1 20 A 9 B 23 -0.677 A_DT9:DA23_B 7 -6.321 -0.690 -0.151 -0.062 -1.143 1 20 A 10 B 22 -2.185 A_DA10:DT22_B 8 -9.786 -1.016 0.122 -0.695 -0.966 1 20 A 11 B 21 -11.561 A_DT11:DA21_B 9 -2.438 -0.988 0.007 -0.424 -5.155 1 20 A 12 B 20 -3.085 A_DA12:DT20_B 10 -10.106 0.394 -0.157 -0.296 10.089 1 20 A 13 B 19 1.768 A_DA13:DT19_B 11 -2.744 0.442 0.438 -0.335 5.082 1 19 A 14 B 18 -3.069 A_DG14:DC18_B 12 -3.653 0.231 0.271 -0.334 2.957 27.029 A A 3 4 10.666 B B 29 28 2.966 4.929 -0.456 0.034 AA_DG3DT4:DA28DC29_BB 1 -5.057 10.942 26.107 -1.082 -0.209 3.008 28.128 A A 4 5 8.718 B B 28 27 3.140 4.216 0.139 -0.670 AA_DT4DT5:DA27DA28_BB 2 2.506 -5.181 27.706 -2.314 0.271 3.306 46.120 A A 5 6 4.221 B B 27 26 3.289 3.300 -0.007 0.527 AA_DT5DT6:DA26DA27_BB 3 3.944 -5.044 45.848 0.387 0.350 3.259 27.358 A A 6 7 -2.420 B B 26 25 3.199 -1.141 0.648 -0.087 AA_DT6DT7:DA25DA26_BB 4 3.804 -8.071 27.073 0.096 -0.433 3.442 35.164 A A 7 8 1.000 B B 25 24 3.450 0.604 0.111 -0.469 AA_DT7DT8:DA24DA25_BB 5 0.081 -0.134 35.159 -0.871 -0.171 3.224 37.149 A A 8 9 5.711 B B 24 23 3.191 3.632 0.498 0.355 AA_DT8DT9:DA23DA24_BB 6 1.202 -1.890 36.958 0.081 -0.624 3.231 37.170 A A 9 10 2.284 B B 23 22 3.177 1.454 -0.253 1.226 AA_DT9DA10:DT22DA23_BB 7 -2.862 4.495 37.036 1.733 0.022 3.334 32.458 A A 10 11 1.137 B B 22 21 3.340 0.636 -0.185 -0.484 AA_DA10DT11:DA21DT22_BB 8 -0.895 1.601 32.439 -0.980 0.171 3.681 44.537 A A 11 12 4.559 B B 21 20 3.630 3.452 0.409 0.963 AA_DT11DA12:DT20DA21_BB 9 -1.040 1.373 44.399 0.915 -0.646 2.738 31.390 A A 12 13 -2.191 B B 20 19 2.771 -1.182 0.156 -0.187 AA_DA12DA13:DT19DT20_BB 10 -3.833 7.103 31.139 -0.157 -0.896 3.371 37.180 A A 13 14 4.530 B B 19 18 3.432 2.886 -0.251 -0.716 AA_DA13DG14:DC18DT19_BB 11 -0.399 0.627 37.070 -1.523 0.338 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 2002-02-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession Native wild-type Hin recombinase DNA-binding domain bound to underivatized hixL half-site. FORM1 BR18 DERIVATIVE FORM1 I5 DERIVATIVE FORM2 I4 DERIVATIVE FORM1 A10G MUTANT FORM1 T11G MUTANT FORM1 T11C MUTANT RCSB Y RCSB 2001-07-13 REL REL SYNTHETIC PEPTIDE sample 1IJW PDB experimental model T 2 n 1 DT 2 A G 3 n 2 DG 3 A T 4 n 3 DT 4 A T 5 n 4 DT 5 A T 6 n 5 DT 6 A T 7 n 6 DT 7 A T 8 n 7 DT 8 A T 9 n 8 DT 9 A A 10 n 9 DA 10 A T 11 n 10 DT 11 A A 12 n 11 DA 12 A A 13 n 12 DA 13 A G 14 n 13 DG 14 A A 15 n 14 DA 15 A A 16 n 1 DA 16 B T 17 n 2 DT 17 B C 18 n 3 DC 18 B T 19 n 4 DT 19 B T 20 n 5 DT 20 B A 21 n 6 DA 21 B T 22 n 7 DT 22 B A 23 n 8 DA 23 B A 24 n 9 DA 24 B A 25 n 10 DA 25 B A 26 n 11 DA 26 B A 27 n 12 DA 27 B A 28 n 13 DA 28 B C 29 n 14 DC 29 B n 1 139 C ARG 140 n 2 ARG 140 C PRO 141 n 3 PRO 141 C ARG 142 n 4 ARG 142 C ALA 143 n 5 ALA 143 C ILE 144 n 6 ILE 144 C ASN 145 n 7 ASN 145 C LYS 146 n 8 LYS 146 C HIS 147 n 9 HIS 147 C GLU 148 n 10 GLU 148 C GLN 149 n 11 GLN 149 C GLU 150 n 12 GLU 150 C GLN 151 n 13 GLN 151 C ILE 152 n 14 ILE 152 C SER 153 n 15 SER 153 C ARG 154 n 16 ARG 154 C LEU 155 n 17 LEU 155 C LEU 156 n 18 LEU 156 C GLU 157 n 19 GLU 157 C LYS 158 n 20 LYS 158 C GLY 159 n 21 GLY 159 C HIS 160 n 22 HIS 160 C PRO 161 n 23 PRO 161 C ARG 162 n 24 ARG 162 C GLN 163 n 25 GLN 163 C GLN 164 n 26 GLN 164 C LEU 165 n 27 LEU 165 C ALA 166 n 28 ALA 166 C ILE 167 n 29 ILE 167 C ILE 168 n 30 ILE 168 C PHE 169 n 31 PHE 169 C GLY 170 n 32 GLY 170 C ILE 171 n 33 ILE 171 C GLY 172 n 34 GLY 172 C VAL 173 n 35 VAL 173 C SER 174 n 36 SER 174 C THR 175 n 37 THR 175 C LEU 176 n 38 LEU 176 C TYR 177 n 39 TYR 177 C ARG 178 n 40 ARG 178 C TYR 179 n 41 TYR 179 C PHE 180 n 42 PHE 180 C PRO 181 n 43 PRO 181 C ALA 182 n 44 ALA 182 C SER 183 n 45 SER 183 C SER 184 n 46 SER 184 C ILE 185 n 47 ILE 185 C n 48 186 C n 49 187 C n 50 188 C n 51 189 C n 52 190 C author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 C CG LYS 146 C CG LYS 8 1 Y 1 C CD LYS 146 C CD LYS 8 1 Y 1 C CE LYS 146 C CE LYS 8 1 Y 1 C NZ LYS 146 C NZ LYS 8 1 Y 1 C CB GLU 150 C CB GLU 12 1 Y 1 C CG GLU 150 C CG GLU 12 1 Y 1 C CD GLU 150 C CD GLU 12 1 Y 1 C OE1 GLU 150 C OE1 GLU 12 1 Y 1 C OE2 GLU 150 C OE2 GLU 12 1 Y 1 C CG ARG 154 C CG ARG 16 1 Y 1 C CD ARG 154 C CD ARG 16 1 Y 1 C NE ARG 154 C NE ARG 16 1 Y 1 C CZ ARG 154 C CZ ARG 16 1 Y 1 C NH1 ARG 154 C NH1 ARG 16 1 Y 1 C NH2 ARG 154 C NH2 ARG 16 1 Y 1 C CD LYS 158 C CD LYS 20 1 Y 1 C CE LYS 158 C CE LYS 20 1 Y 1 C NZ LYS 158 C NZ LYS 20 1 Y 1 C CB GLN 164 C CB GLN 26 1 Y 1 C CD GLN 164 C CD GLN 26 1 Y 1 C OE1 GLN 164 C OE1 GLN 26 1 Y 1 C NE2 GLN 164 C NE2 GLN 26 1 Y 1 C GLY 139 C GLY 1 1 Y 1 C LYS 186 C LYS 48 1 Y 1 C LYS 187 C LYS 49 1 Y 1 C ARG 188 C ARG 50 1 Y 1 C MET 189 C MET 51 1 Y 1 C ASN 190 C ASN 52 1 Y 1 C C O OG PRO SER 181 184 2.18 1 A DA 15 0.058 SIDE CHAIN 1 B DA 23 0.058 SIDE CHAIN 1 B DA 28 0.081 SIDE CHAIN 1 B DC 29 0.069 SIDE CHAIN 1 -2.89 0.40 104.50 101.61 B B B O4' C4' C3' DA DA DA 16 16 16 A N 1 12.36 1.20 115.70 128.06 B B B C5' C4' C3' DA DA DA 16 16 16 A N 1 -14.68 1.80 114.10 99.42 B B B C5' C4' C3' DA DA DA 16 16 16 B N 1 10.19 1.10 109.80 119.99 B B B C5' C4' O4' DT DT DT 17 17 17 A A N 1 15.39 2.00 112.30 127.69 B B B C4' C3' O3' DT DT DT 17 17 17 B N 1 C ARG 142 -40.65 156.61 1 C ASN 145 -46.94 159.87 1 C ARG 154 -60.78 -85.72 1 C LEU 155 -23.55 -52.16 1 C HIS 160 3.35 138.70 1 C ARG 162 -49.59 1.52 1 C SER 184 -169.74 39.41 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP 53.10 17.368 0.00000 0.00000 3.275 0.00000 -20.643 0.3281000 0.2556000 0.2556000 2.86 41.30 362 3502 9.27 89.63 RANDOM 1 ANISOTROPIC_FIXED_ISOTROPIC 0.000 MOLECULAR REPLACEMENT 1IJW MLF 100.00 0.35 0.46 0.43 5.00 0.38 0.46 2.86 41.30 0 930 0 576 354 0.009 1.592 20.222 1.842 5.16 4.000 7.51 6.000 7.43 6.000 10.31 7.000 0.3948000 0.3904000 2.99 43 343 8 9.00 80.76 44.00 2.86 41.3 1JKQ 3502 0.000 0.1880000 1 15.26 12.0 89.63 2.86 2.99 3.00 0.1880000 2.04 80.76 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 1 N N 2 N N 3 N N C ASN 145 C ASN 7 HELX_P C GLY 159 C GLY 21 1 1 15 C GLN 163 C GLN 25 HELX_P C PHE 169 C PHE 31 1 2 7 C GLY 172 C GLY 34 HELX_P C PHE 180 C PHE 42 1 3 9 hydrog WATSON-CRICK A DG 3 A N1 DG 2 1_555 B DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 2 1_555 B DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 2 1_555 B DC 29 B N4 DC 14 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 3 1_555 B DA 28 B N1 DA 13 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 3 1_555 B DA 28 B N6 DA 13 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 4 1_555 B DA 27 B N1 DA 12 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 4 1_555 B DA 27 B N6 DA 12 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 5 1_555 B DA 26 B N1 DA 11 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 5 1_555 B DA 26 B N6 DA 11 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 6 1_555 B DA 25 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 6 1_555 B DA 25 B N6 DA 10 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 7 1_555 B DA 24 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 7 1_555 B DA 24 B N6 DA 9 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 8 1_555 B DA 23 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 8 1_555 B DA 23 B N6 DA 8 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 9 1_555 B DT 22 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 9 1_555 B DT 22 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 10 1_555 B DA 21 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 10 1_555 B DA 21 B N6 DA 6 1_555 hydrog WATSON-CRICK A DA 12 A N1 DA 11 1_555 B DT 20 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 12 A N6 DA 11 1_555 B DT 20 B O4 DT 5 1_555 hydrog WATSON-CRICK A DA 13 A N1 DA 12 1_555 B DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 13 A N6 DA 12 1_555 B DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK A DG 14 A N1 DG 13 1_555 B DC 18 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A N2 DG 13 1_555 B DC 18 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A O6 DG 13 1_555 B DC 18 B N4 DC 3 1_555 DNA BINDING PROTEIN/DNA WATER-MEDIATED RECOGNITION, PROTEIN-DNA COMPLEX, HIN RECOMBINASE, G9T MUTANT, DNA BINDING PROTEIN-DNA COMPLEX HIN_SALTY UNP 3 139 P03013 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN 1JKQ PDB 1 1JKQ 1JKQ PDB 2 1JKQ 139 190 1JKQ 139 190 P03013 C 1 1 52 2 15 1JKQ 2 15 1JKQ A 2 1 14 16 29 1JKQ 16 29 1JKQ B 3 1 14 20 C 2 2 21