0.011616 0.000000 0.000000 0.000000 0.012091 0.000000 0.000000 0.000000 0.022289 0.00000 0.00000 0.00000 Chiu, T.K. Sohn, C. Johnson, R.C. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 86.087 82.708 44.865 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N O N 59 N P N 60 N O N 61 N O N 62 N O N 63 N C N 64 R C N 65 N O N 66 S C N 67 N O N 68 N C N 69 R C Y 70 N N Y 71 N C Y 72 N N Y 73 N C Y 74 N C N 75 N N Y 76 N N Y 77 N C Y 78 N N Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N O N 95 N P N 96 N O N 97 N O N 98 N O N 99 N C N 100 R C N 101 N O N 102 S C N 103 N O N 104 N C N 105 R C N 106 N N N 107 N C N 108 N O N 109 N N N 110 N C N 111 N N N 112 N C N 113 N C N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N O N 129 N P N 130 N O N 131 N O N 132 N O N 133 N C N 134 R C N 135 N O N 136 S C N 137 N O N 138 N C N 139 R C Y 140 N N Y 141 N C Y 142 N N Y 143 N C N 144 N C N 145 N O N 146 N N N 147 N C N 148 N N N 149 N N Y 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N P N 167 N O N 168 N O N 169 N O N 170 N C N 171 R C N 172 N O N 173 S C N 174 N O N 175 N C N 176 R C N 177 N N N 178 N C N 179 N O N 180 N N N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N O N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N O N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 N C N 242 N C N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N N Y 257 N C Y 258 N C Y 259 N N N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N O N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 S C N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N C N 325 N C N 326 N N N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N S N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N C N 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 R C N 422 N O N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N C N 435 N C N 436 N C N 437 N C N 438 N N N 439 N O N 440 N O N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N N N 455 S C N 456 N C N 457 N O N 458 N C Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C N 465 N O N 466 N O N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N N N 479 S C N 480 N C N 481 N O N 482 N C N 483 N C N 484 N C N 485 N O N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing Y 78 N sing Y 79 N sing Y 80 N doub N 81 N sing Y 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing N 88 N sing Y 89 N sing Y 90 N doub N 91 N sing Y 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N sing Y 262 N doub Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing Y 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub N 374 N sing Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing Y 457 N doub Y 458 N sing Y 459 N sing N 460 N sing Y 461 N doub N 462 N sing Y 463 N doub N 464 N sing Y 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N doub N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing UK EMBO J. EMJODG 0897 0261-4189 21 801 814 10.1093/emboj/21.4.801 11847127 Testing water-mediated DNA recognition by the Hin recombinase. 2002 Thesis 145 241 How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase 2001 US Science SCIEAS 0038 0036-8075 263 348 355 Hin Recombinase Bound to DNA: The Origin of Specificity in Major and Minor Groove Interactions 1994 10.2210/pdb1jkr/pdb pdb_00001jkr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 1997-08-01 MOLECULAR REPLACEMENT WITH 1IJW HAVING THE PROPER DNA SUBSTITUTIONS AS THE STARTING MODEL. M x-ray 1 0.908 1.0 A1 CHESS 0.908 SYNCHROTRON CHESS BEAMLINE A1 4309.826 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*CP*AP*AP*GP*A)-3' 1 syn polymer 4247.805 5'-D(*AP*TP*CP*TP*TP*GP*TP*CP*AP*AP*AP*AP*AP*C)-3' 1 syn polymer 6047.051 DNA-INVERTASE HIN RESIDUES 139 TO 190 1 syn polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 18.015 water 2 nat water Hin Recombinase no no (DT)(DG)(DT)(DT)(DT)(DT)(DT)(DG)(DA)(DC)(DA)(DA)(DG)(DA) TGTTTTTGACAAGA A polydeoxyribonucleotide no no (DA)(DT)(DC)(DT)(DT)(DG)(DT)(DC)(DA)(DA)(DA)(DA)(DA)(DC) ATCTTGTCAAAAAC B polydeoxyribonucleotide no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.76 53.78 VAPOR DIFFUSION, HANGING DROP 8.50 HANGING DROP VAPOR DIFFUSION AT 4C, WITH INITIAL CONCENTRATION IN DROP OF 0.10 MM DNA, 0.06 MM HIN, 10 MM TRIS (PH 8.5), 10 MM CACL2, 23 MM NACL, 2.5% V/V PEG400, AND 1.56 MM NA CACODYLATE. RESERVOIR SOLUTION CONTAINS 100 MM TRIS (PH 8.5), 100 MM CACL2, 100 MM NACL, AND 25% PEG400. CONCENTRATION OF PEG400 IN RESERVOIR SOLUTION WAS INCREASED IN 5% INCREMENTS TO 35%., pH 8.50, VAPOR DIFFUSION, HANGING DROP DNA 1 HIN 1 TRIS 1 CaCl2 1 NaCl 1 PEG 400 1 sodium cacodylate 1 Tris 2 CaCl2 2 NaCl 2 PEG 400 2 -22.437 1 19 A 3 B 29 -2.976 A_DG3:DC29_B 1 7.227 0.372 -0.820 0.192 -4.581 1 20 A 4 B 28 -14.995 A_DT4:DA28_B 2 -9.404 0.951 -0.338 -0.224 -1.157 1 20 A 5 B 27 0.373 A_DT5:DA27_B 3 -27.297 -0.079 -0.485 -0.133 -2.067 1 20 A 6 B 26 -3.281 A_DT6:DA26_B 4 -32.019 -0.005 -0.979 0.036 -2.925 1 20 A 7 B 25 -6.631 A_DT7:DA25_B 5 -17.969 -1.231 -0.355 -0.275 2.269 1 20 A 8 B 24 -0.251 A_DT8:DA24_B 6 -14.495 -0.555 -0.150 0.171 4.565 1 19 A 9 B 23 1.432 A_DG9:DC23_B 7 -15.734 -0.016 -0.086 -0.212 6.632 1 20 A 10 B 22 -6.971 A_DA10:DT22_B 8 -20.759 0.172 0.173 0.009 2.848 1 19 A 11 B 21 -4.892 A_DC11:DG21_B 9 -26.083 -0.193 0.130 -0.238 2.121 1 20 A 12 B 20 -4.107 A_DA12:DT20_B 10 -17.181 0.431 -0.138 -0.261 17.358 1 20 A 13 B 19 4.084 A_DA13:DT19_B 11 -7.505 0.432 0.400 -0.033 4.677 1 19 A 14 B 18 -4.561 A_DG14:DC18_B 12 -12.558 0.195 -0.073 -0.132 2.936 35.417 A A 3 4 16.090 B B 29 28 3.022 9.655 -1.077 -0.268 AA_DG3DT4:DA28DC29_BB 1 -3.680 6.134 33.922 -1.764 1.266 3.082 26.481 A A 4 5 4.663 B B 28 27 3.102 2.129 0.362 -0.397 AA_DT4DT5:DA27DA28_BB 2 3.220 -7.054 26.203 -1.403 0.019 3.178 37.462 A A 5 6 17.843 B B 27 26 3.176 11.275 -0.311 0.640 AA_DT5DT6:DA26DA27_BB 3 3.788 -5.995 35.588 -0.480 0.980 3.182 34.414 A A 6 7 -4.638 B B 26 25 3.258 -2.741 0.729 0.496 AA_DT6DT7:DA25DA26_BB 4 -1.271 2.151 34.285 1.260 -1.427 3.149 37.578 A A 7 8 -3.295 B B 25 24 3.133 -2.121 -0.158 -0.325 AA_DT7DT8:DA24DA25_BB 5 -1.083 1.683 37.505 -0.238 0.109 3.600 39.405 A A 8 9 4.042 B B 24 23 3.453 2.719 0.811 1.372 AA_DT8DG9:DC23DA24_BB 6 4.098 -6.093 39.109 1.687 -0.679 3.438 36.924 A A 9 10 14.506 B B 23 22 3.352 9.074 -1.002 0.348 AA_DG9DA10:DT22DC23_BB 7 -4.866 7.780 35.508 -0.749 0.885 3.415 33.044 A A 10 11 1.625 B B 22 21 3.448 0.924 0.570 -0.683 AA_DA10DC11:DG21DT22_BB 8 -0.712 1.251 33.024 -1.365 -1.129 3.553 39.070 A A 11 12 3.563 B B 21 20 3.522 2.381 -0.114 0.651 AA_DC11DA12:DT20DG21_BB 9 0.368 -0.550 38.998 0.664 0.218 2.647 29.262 A A 12 13 -0.674 B B 20 19 2.764 -0.340 0.705 -0.173 AA_DA12DA13:DT19DT20_BB 10 -3.970 7.883 28.996 -0.281 -2.109 3.482 35.695 A A 13 14 9.296 B B 19 18 3.647 5.675 -0.550 -0.661 AA_DA13DG14:DC18DT19_BB 11 1.159 -1.898 35.237 -1.979 1.080 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-02-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Native wild-type Hin recombinase DNA-binding domain bound to underivatized hixL half-site. FORM1 BR18 DERIVATIVE FORM1 I5 DERIVATIVE FORM2 I4 DERIVATIVE FORM1 A10G MUTANT FORM1 T11G MUTANT FORM1 G9T MUTANT RCSB Y RCSB 2001-07-13 REL REL TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HOH water SYNTHETIC PEPTIDE sample 1IJW PDB experimental model TRS 204 4 TRS TRS 204 A HOH 202 5 HOH HOH 202 B HOH 203 5 HOH HOH 203 C T 2 n 1 DT 2 A G 3 n 2 DG 3 A T 4 n 3 DT 4 A T 5 n 4 DT 5 A T 6 n 5 DT 6 A T 7 n 6 DT 7 A T 8 n 7 DT 8 A G 9 n 8 DG 9 A A 10 n 9 DA 10 A C 11 n 10 DC 11 A A 12 n 11 DA 12 A A 13 n 12 DA 13 A G 14 n 13 DG 14 A A 15 n 14 DA 15 A A 16 n 1 DA 16 B T 17 n 2 DT 17 B C 18 n 3 DC 18 B T 19 n 4 DT 19 B T 20 n 5 DT 20 B G 21 n 6 DG 21 B T 22 n 7 DT 22 B C 23 n 8 DC 23 B A 24 n 9 DA 24 B A 25 n 10 DA 25 B A 26 n 11 DA 26 B A 27 n 12 DA 27 B A 28 n 13 DA 28 B C 29 n 14 DC 29 B GLY 139 n 1 GLY 139 C ARG 140 n 2 ARG 140 C PRO 141 n 3 PRO 141 C ARG 142 n 4 ARG 142 C ALA 143 n 5 ALA 143 C ILE 144 n 6 ILE 144 C ASN 145 n 7 ASN 145 C LYS 146 n 8 LYS 146 C HIS 147 n 9 HIS 147 C GLU 148 n 10 GLU 148 C GLN 149 n 11 GLN 149 C GLU 150 n 12 GLU 150 C GLN 151 n 13 GLN 151 C ILE 152 n 14 ILE 152 C SER 153 n 15 SER 153 C ARG 154 n 16 ARG 154 C LEU 155 n 17 LEU 155 C LEU 156 n 18 LEU 156 C GLU 157 n 19 GLU 157 C LYS 158 n 20 LYS 158 C GLY 159 n 21 GLY 159 C HIS 160 n 22 HIS 160 C PRO 161 n 23 PRO 161 C ARG 162 n 24 ARG 162 C GLN 163 n 25 GLN 163 C GLN 164 n 26 GLN 164 C LEU 165 n 27 LEU 165 C ALA 166 n 28 ALA 166 C ILE 167 n 29 ILE 167 C ILE 168 n 30 ILE 168 C PHE 169 n 31 PHE 169 C GLY 170 n 32 GLY 170 C ILE 171 n 33 ILE 171 C GLY 172 n 34 GLY 172 C VAL 173 n 35 VAL 173 C SER 174 n 36 SER 174 C THR 175 n 37 THR 175 C LEU 176 n 38 LEU 176 C TYR 177 n 39 TYR 177 C ARG 178 n 40 ARG 178 C TYR 179 n 41 TYR 179 C PHE 180 n 42 PHE 180 C PRO 181 n 43 PRO 181 C ALA 182 n 44 ALA 182 C SER 183 n 45 SER 183 C SER 184 n 46 SER 184 C n 47 185 C n 48 186 C n 49 187 C n 50 188 C n 51 189 C n 52 190 C author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 C CE LYS 146 C CE LYS 8 1 Y 1 C NZ LYS 146 C NZ LYS 8 1 Y 1 C CG HIS 147 C CG HIS 9 1 Y 1 C ND1 HIS 147 C ND1 HIS 9 1 Y 1 C CD2 HIS 147 C CD2 HIS 9 1 Y 1 C CE1 HIS 147 C CE1 HIS 9 1 Y 1 C NE2 HIS 147 C NE2 HIS 9 1 Y 1 C CG GLU 150 C CG GLU 12 1 Y 1 C CD GLU 150 C CD GLU 12 1 Y 1 C OE1 GLU 150 C OE1 GLU 12 1 Y 1 C OE2 GLU 150 C OE2 GLU 12 1 Y 1 C CG GLU 157 C CG GLU 19 1 Y 1 C CD GLU 157 C CD GLU 19 1 Y 1 C OE1 GLU 157 C OE1 GLU 19 1 Y 1 C OE2 GLU 157 C OE2 GLU 19 1 Y 1 C CG LYS 158 C CG LYS 20 1 Y 1 C CD LYS 158 C CD LYS 20 1 Y 1 C CE LYS 158 C CE LYS 20 1 Y 1 C NZ LYS 158 C NZ LYS 20 1 Y 1 C ILE 185 C ILE 47 1 Y 1 C LYS 186 C LYS 48 1 Y 1 C LYS 187 C LYS 49 1 Y 1 C ARG 188 C ARG 50 1 Y 1 C MET 189 C MET 51 1 Y 1 C ASN 190 C ASN 52 1 Y 1 A DT 7 0.094 SIDE CHAIN 1 A DC 11 0.079 SIDE CHAIN 1 A DA 15 0.088 SIDE CHAIN 1 B DT 20 0.067 SIDE CHAIN 1 B DA 28 0.095 SIDE CHAIN 1 C TYR 179 0.069 SIDE CHAIN 1 8.59 1.20 110.70 119.29 A A A O5' P OP2 DT DT DT 8 8 8 N 1 10.79 1.20 115.70 126.49 B B B C5' C4' C3' DA DA DA 16 16 16 A N 1 7.64 1.20 115.70 123.34 B B B C5' C4' C3' DT DT DT 17 17 17 A A N 1 2.95 0.30 108.30 111.25 B B B O4' C1' N9 DA DA DA 28 28 28 N 1 C ASN 145 -65.63 -135.49 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 60.20 15.107 0.00000 0.00000 2.251 0.00000 -17.359 0.3245000 0.2687000 0.2687000 2.28 24.80 707 7102 9.28 93.23 RANDOM 1 ANISOTROPIC_FIXED_ISOTROPIC 0.000 MOLECULAR REPLACEMENT 1IJW MLF 100.00 0.25 0.55 0.47 5.00 0.66 0.80 2.28 24.80 2 939 8 576 353 0.013 1.720 19.440 1.882 8.51 4.000 11.44 6.000 11.62 6.000 15.66 7.000 0.4437000 0.4536000 2.38 66 610 8 7.04 72.14 69.00 2.28 24.8 1JKR 7102 0.000 0.8900000 1 15.68 17.0 93.23 2.28 2.38 2.49 0.2520000 2.60 72.14 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N C LYS 146 C LYS 8 HELX_P C LYS 158 C LYS 20 1 1 13 C PRO 161 C PRO 23 HELX_P C PHE 169 C PHE 31 1 2 9 C GLY 172 C GLY 34 HELX_P C PHE 180 C PHE 42 1 3 9 hydrog WATSON-CRICK A DG 3 A N1 DG 2 1_555 B DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 2 1_555 B DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 2 1_555 B DC 29 B N4 DC 14 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 3 1_555 B DA 28 B N1 DA 13 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 3 1_555 B DA 28 B N6 DA 13 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 4 1_555 B DA 27 B N1 DA 12 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 4 1_555 B DA 27 B N6 DA 12 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 5 1_555 B DA 26 B N1 DA 11 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 5 1_555 B DA 26 B N6 DA 11 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 6 1_555 B DA 25 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 6 1_555 B DA 25 B N6 DA 10 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 7 1_555 B DA 24 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 7 1_555 B DA 24 B N6 DA 9 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 8 1_555 B DC 23 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 8 1_555 B DC 23 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 8 1_555 B DC 23 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 9 1_555 B DT 22 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 9 1_555 B DT 22 B O4 DT 7 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 10 1_555 B DG 21 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 10 1_555 B DG 21 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 10 1_555 B DG 21 B N2 DG 6 1_555 hydrog WATSON-CRICK A DA 12 A N1 DA 11 1_555 B DT 20 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 12 A N6 DA 11 1_555 B DT 20 B O4 DT 5 1_555 hydrog WATSON-CRICK A DA 13 A N1 DA 12 1_555 B DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 13 A N6 DA 12 1_555 B DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK A DG 14 A N1 DG 13 1_555 B DC 18 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A N2 DG 13 1_555 B DC 18 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 14 A O6 DG 13 1_555 B DC 18 B N4 DC 3 1_555 DNA BINDING PROTEIN/DNA WATER-MEDIATED RECOGNITION, PROTEIN-DNA COMPLEX, HIN RECOMBINASE, T11C MUTANT, DNA BINDING PROTEIN-DNA COMPLEX HIN_SALTY UNP 3 139 P03013 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN 1JKR PDB 1 1JKR 1JKR PDB 2 1JKR 139 190 1JKR 139 190 P03013 C 1 1 52 2 15 1JKR 2 15 1JKR A 2 1 14 16 29 1JKR 16 29 1JKR B 3 1 14 BINDING SITE FOR RESIDUE TRS A 204 A TRS 204 Software 4 A DG 9 A DG 8 4 1_555 A DA 10 A DA 9 4 1_555 B DT 22 B DT 7 4 6_554 B DA 25 B DA 10 4 1_555 20 C 2 2 21