1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Almeida, M.S.
Cabral, K.M.S.
Kurtenbach, E.
Almeida, F.C.L.
Valente, A.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
315
749
757
10.1006/jmbi.2001.5252
11812144
Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action.
2002
To be Published
0353
cDNA CLONING AND HETEROLOGOUS EXPRESSION OF FUNCTIONAL CYS-RICH ANTIFUNGAL PROTEIN PSD1 IN THE YEAST PICHIA PASTORIS
US
Arch.Biochem.Biophys.
ABBIA4
0158
0003-9861
378
278
286
10.1006/abbi.2000.1824
Characterization of two novel defense peptides from pea (Pisum sativum) seeds
2000
10.2210/pdb1jkz/pdb
pdb_00001jkz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
5217.923
DEFENSE-RELATED PEPTIDE 1
1
nat
polymer
PSD1
no
no
KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNWKCFCTQNC
KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNWKCFCTQNC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pea
ISOLATED FROM PEA SEEDS
Pisum
sample
3888
Pisum sativum
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-02-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
SEQUENCE
An appropriate sequence database reference was not
available at the time of processing.
RCSB
Y
RCSB
2001-07-13
REL
REL
structures with the lowest energy
100
20
2D NOESY
2D TOCSY
1H/15N HMQC
1H/13C HMQC
10 mM sodium phosphate
4
AMBIENT
300
K
THE STRUCTURE WAS CALCULATED USING TORSIONAL SIMULATED ANNEALING
AND THEN MINIMIZED
18
lowest energy
1.8 mM PSD1
10 mM SODIUM PHOSPHATE BUFFER pH 4
BRUKER
collection
XwinNMR
2.5
BRUCE A. JOHNSON
data analysis
NMRView
5.2
AXEL BRUNGER
structure solution
CNS_SOLVE
1.0
AXEL BRUNGER
refinement
CNS_SOLVE
1.0
600
Bruker
DRX
400
Bruker
DRX
LYS
1
n
1
LYS
1
A
THR
2
n
2
THR
2
A
CYS
3
n
3
CYS
3
A
GLU
4
n
4
GLU
4
A
HIS
5
n
5
HIS
5
A
LEU
6
n
6
LEU
6
A
ALA
7
n
7
ALA
7
A
ASP
8
n
8
ASP
8
A
THR
9
n
9
THR
9
A
TYR
10
n
10
TYR
10
A
ARG
11
n
11
ARG
11
A
GLY
12
n
12
GLY
12
A
VAL
13
n
13
VAL
13
A
CYS
14
n
14
CYS
14
A
PHE
15
n
15
PHE
15
A
THR
16
n
16
THR
16
A
ASN
17
n
17
ASN
17
A
ALA
18
n
18
ALA
18
A
SER
19
n
19
SER
19
A
CYS
20
n
20
CYS
20
A
ASP
21
n
21
ASP
21
A
ASP
22
n
22
ASP
22
A
HIS
23
n
23
HIS
23
A
CYS
24
n
24
CYS
24
A
LYS
25
n
25
LYS
25
A
ASN
26
n
26
ASN
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
HIS
29
n
29
HIS
29
A
LEU
30
n
30
LEU
30
A
ILE
31
n
31
ILE
31
A
SER
32
n
32
SER
32
A
GLY
33
n
33
GLY
33
A
THR
34
n
34
THR
34
A
CYS
35
n
35
CYS
35
A
HIS
36
n
36
HIS
36
A
ASN
37
n
37
ASN
37
A
TRP
38
n
38
TRP
38
A
LYS
39
n
39
LYS
39
A
CYS
40
n
40
CYS
40
A
PHE
41
n
41
PHE
41
A
CYS
42
n
42
CYS
42
A
THR
43
n
43
THR
43
A
GLN
44
n
44
GLN
44
A
ASN
45
n
45
ASN
45
A
CYS
46
n
46
CYS
46
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
5
A
O
HIS
5
A
N
CYS
42
A
N
CYS
42
A
N
PHE
41
A
N
PHE
41
A
O
THR
34
A
O
THR
34
1
A
A
OD2
HZ2
ASP
LYS
21
25
1.43
1
A
A
O
H
CYS
CYS
20
24
1.50
1
A
A
O
H
HIS
LYS
23
27
1.56
1
A
A
H
O
HIS
LYS
36
39
1.59
2
A
A
HZ3
O
LYS
ILE
25
31
1.38
2
A
A
O
H
CYS
CYS
20
24
1.50
2
A
A
O
H
HIS
LYS
23
27
1.55
2
A
A
OH
HG
TYR
SER
10
19
1.58
3
A
A
O
H
CYS
CYS
20
24
1.51
3
A
A
O
H
HIS
LYS
23
27
1.59
4
A
A
HH21
OG
ARG
SER
11
19
1.35
4
A
A
HZ2
O
LYS
ILE
25
31
1.44
4
A
A
OH
HG
TYR
SER
10
19
1.45
4
A
A
O
H
CYS
CYS
20
24
1.49
4
A
A
O
H
HIS
LYS
23
27
1.59
5
A
A
O
HG1
SER
THR
32
43
1.51
5
A
A
O
H
HIS
LYS
23
27
1.59
5
A
A
O
H
CYS
CYS
20
24
1.60
6
A
A
OD2
HZ2
ASP
LYS
21
25
1.47
6
A
A
O
HZ1
THR
LYS
9
27
1.51
6
A
A
O
H
HIS
LYS
23
27
1.52
6
A
A
H
O
HIS
LYS
36
39
1.53
7
A
A
O
H
CYS
CYS
20
24
1.49
7
A
A
H
O
CYS
GLN
3
44
1.55
7
A
A
O
H
HIS
CYS
5
42
1.56
7
A
A
O
H
HIS
LYS
23
27
1.59
8
A
A
O
H
CYS
CYS
20
24
1.49
8
A
A
O
H
HIS
CYS
5
42
1.52
8
A
A
O
H
HIS
LYS
23
27
1.52
8
A
A
OH
HG
TYR
SER
10
19
1.56
9
A
A
O
H
CYS
CYS
20
24
1.52
10
A
A
O
H
CYS
CYS
20
24
1.52
10
A
A
O
H
HIS
LYS
23
27
1.59
11
A
A
O
H
HIS
LYS
23
27
1.49
11
A
A
O
H
CYS
CYS
20
24
1.53
12
A
A
HZ3
O
LYS
ILE
25
31
1.35
12
A
A
O
HZ3
THR
LYS
9
27
1.44
12
A
A
O
HG
THR
SER
16
19
1.51
12
A
A
O
H
CYS
CYS
20
24
1.53
12
A
A
O
H
HIS
LYS
23
27
1.56
13
A
A
HZ1
O
LYS
ILE
25
31
1.52
13
A
A
O
H
CYS
CYS
20
24
1.55
13
A
A
O
H
HIS
LYS
23
27
1.58
13
A
A
H
O
CYS
GLN
3
44
1.59
14
A
A
OD1
HZ3
ASP
LYS
21
25
1.47
14
A
A
OE1
HE2
GLU
HIS
4
36
1.57
15
A
A
OD2
HZ3
ASP
LYS
21
25
1.45
15
A
A
H
O
HIS
LYS
36
39
1.51
15
A
A
O
H
HIS
LYS
23
27
1.52
15
A
A
O
HZ3
THR
LYS
9
27
1.53
16
A
A
O
H
CYS
CYS
20
24
1.55
16
A
A
O
H
HIS
LYS
23
27
1.60
17
A
A
O
HG
THR
SER
16
19
1.39
17
A
A
HZ1
O
LYS
ILE
25
31
1.41
17
A
A
O
H
CYS
CYS
20
24
1.51
17
A
A
H
O
HIS
CYS
5
42
1.54
17
A
A
O
H
HIS
LYS
23
27
1.58
18
A
A
HZ2
O
LYS
ILE
25
31
1.35
18
A
A
O
H
CYS
CYS
20
24
1.46
19
A
A
O
HG
THR
SER
16
19
1.42
19
A
A
O
H
HIS
LYS
23
27
1.54
19
A
A
O
H
CYS
CYS
20
24
1.55
20
A
A
OD2
HZ2
ASP
LYS
21
25
1.47
20
A
A
O
H
CYS
CYS
20
24
1.50
1
A
THR
9
-107.41
63.34
1
A
TYR
10
-107.20
-169.05
1
A
HIS
29
-38.63
72.03
2
A
THR
9
-105.95
60.41
2
A
TYR
10
-106.22
-164.66
2
A
ARG
11
-108.35
-150.29
2
A
HIS
29
-27.35
75.74
3
A
THR
9
-105.62
56.79
3
A
HIS
29
-27.51
74.02
3
A
ASN
37
62.63
-76.11
3
A
TRP
38
-152.85
20.73
4
A
THR
9
-106.32
58.44
4
A
TYR
10
-107.98
-168.05
4
A
HIS
29
-28.24
76.60
4
A
ASN
37
62.22
-76.26
4
A
TRP
38
-148.83
13.18
5
A
ASP
8
-82.62
33.83
5
A
HIS
29
-38.03
70.38
5
A
LEU
30
-109.28
-167.31
5
A
HIS
36
-110.04
76.36
5
A
ASN
37
75.03
-76.46
6
A
THR
9
-107.14
54.26
6
A
TYR
10
-106.36
-163.74
6
A
ARG
11
-107.56
-149.70
6
A
HIS
29
-29.41
75.18
7
A
THR
9
-105.70
70.96
7
A
TYR
10
-107.83
-169.40
7
A
PHE
15
73.31
-59.03
7
A
HIS
29
-25.86
73.11
8
A
THR
9
-105.60
56.39
8
A
HIS
29
-29.45
76.00
8
A
ASN
37
60.50
-74.87
8
A
TRP
38
-145.35
10.59
9
A
THR
9
-108.07
57.80
9
A
ASP
21
-45.42
-72.49
9
A
HIS
29
-28.12
76.48
9
A
ASN
37
63.28
-75.34
10
A
THR
9
-107.87
48.27
10
A
TYR
10
-107.08
-168.36
10
A
ARG
11
-106.73
-150.46
10
A
HIS
29
-29.26
71.93
10
A
ASN
37
46.92
-78.26
10
A
TRP
38
-147.97
30.60
11
A
THR
9
-145.11
-43.19
11
A
HIS
29
-39.09
69.99
11
A
HIS
36
-96.65
-155.03
11
A
ASN
37
-56.97
78.21
12
A
THR
9
-107.62
60.26
12
A
TYR
10
-107.33
-166.64
12
A
HIS
29
-28.63
73.38
12
A
ASN
37
67.12
-78.95
12
A
TRP
38
-158.38
26.89
13
A
THR
9
-107.92
58.75
13
A
HIS
29
-28.05
71.60
14
A
HIS
29
-31.89
70.47
14
A
ASN
37
25.57
66.66
15
A
THR
9
-108.27
54.57
15
A
TYR
10
-106.62
-163.92
15
A
ARG
11
-108.32
-149.68
15
A
HIS
29
-29.57
76.09
16
A
THR
9
-107.01
68.73
16
A
HIS
29
-30.01
72.05
16
A
HIS
36
-108.43
-152.58
16
A
ASN
37
-62.34
76.49
17
A
THR
9
-107.11
73.73
17
A
PHE
15
-101.50
-67.78
17
A
HIS
29
-28.69
73.38
17
A
HIS
36
-116.85
-151.68
17
A
ASN
37
-59.72
75.16
18
A
THR
9
-107.16
57.83
18
A
HIS
29
-28.96
70.50
18
A
SER
32
-164.10
-161.86
18
A
HIS
36
-95.73
-149.66
18
A
ASN
37
-62.37
73.13
19
A
THR
9
-106.30
63.57
19
A
PHE
15
-121.35
-51.91
19
A
SER
19
-50.92
-72.84
19
A
HIS
29
-31.36
72.86
19
A
HIS
36
-117.30
-155.12
19
A
ASN
37
-60.65
80.04
20
A
THR
9
-106.24
61.30
20
A
TYR
10
-108.20
-159.13
20
A
ARG
11
-109.16
-142.00
20
A
PHE
15
-123.96
-52.08
20
A
HIS
29
-30.08
73.85
NMR Solution Structure of Pisum sativum defensin 1 (Psd1)
1
N
N
A
THR
16
A
THR
16
HELX_P
A
ALA
28
A
ALA
28
1
1
13
disulf
2.026
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
46
A
SG
CYS
46
1_555
disulf
2.031
A
CYS
14
A
SG
CYS
14
1_555
A
CYS
35
A
SG
CYS
35
1_555
disulf
2.029
A
CYS
20
A
SG
CYS
20
1_555
A
CYS
40
A
SG
CYS
40
1_555
disulf
2.036
A
CYS
24
A
SG
CYS
24
1_555
A
CYS
42
A
SG
CYS
42
1_555
ANTIFUNGAL PROTEIN
PLANT DEFENSIN, CYS-RICH, ANTIFUNGAL, ANTIFUNGAL PROTEIN
1JKZ
PDB
1
1JKZ
1
46
1JKZ
1
46
1JKZ
A
1
1
46
3
anti-parallel
anti-parallel
A
THR
2
A
THR
2
A
LEU
6
A
LEU
6
A
LYS
39
A
LYS
39
A
ASN
45
A
ASN
45
A
GLY
33
A
GLY
33
A
HIS
36
A
HIS
36