1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Almeida, M.S. Cabral, K.M.S. Kurtenbach, E. Almeida, F.C.L. Valente, A.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 315 749 757 10.1006/jmbi.2001.5252 11812144 Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action. 2002 To be Published 0353 cDNA CLONING AND HETEROLOGOUS EXPRESSION OF FUNCTIONAL CYS-RICH ANTIFUNGAL PROTEIN PSD1 IN THE YEAST PICHIA PASTORIS US Arch.Biochem.Biophys. ABBIA4 0158 0003-9861 378 278 286 10.1006/abbi.2000.1824 Characterization of two novel defense peptides from pea (Pisum sativum) seeds 2000 10.2210/pdb1jkz/pdb pdb_00001jkz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 5217.923 DEFENSE-RELATED PEPTIDE 1 1 nat polymer PSD1 no no KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNWKCFCTQNC KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNWKCFCTQNC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n pea ISOLATED FROM PEA SEEDS Pisum sample 3888 Pisum sativum database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-02-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name SEQUENCE An appropriate sequence database reference was not available at the time of processing. RCSB Y RCSB 2001-07-13 REL REL structures with the lowest energy 100 20 2D NOESY 2D TOCSY 1H/15N HMQC 1H/13C HMQC 10 mM sodium phosphate 4 AMBIENT 300 K THE STRUCTURE WAS CALCULATED USING TORSIONAL SIMULATED ANNEALING AND THEN MINIMIZED 18 lowest energy 1.8 mM PSD1 10 mM SODIUM PHOSPHATE BUFFER pH 4 BRUKER collection XwinNMR 2.5 BRUCE A. JOHNSON data analysis NMRView 5.2 AXEL BRUNGER structure solution CNS_SOLVE 1.0 AXEL BRUNGER refinement CNS_SOLVE 1.0 600 Bruker DRX 400 Bruker DRX LYS 1 n 1 LYS 1 A THR 2 n 2 THR 2 A CYS 3 n 3 CYS 3 A GLU 4 n 4 GLU 4 A HIS 5 n 5 HIS 5 A LEU 6 n 6 LEU 6 A ALA 7 n 7 ALA 7 A ASP 8 n 8 ASP 8 A THR 9 n 9 THR 9 A TYR 10 n 10 TYR 10 A ARG 11 n 11 ARG 11 A GLY 12 n 12 GLY 12 A VAL 13 n 13 VAL 13 A CYS 14 n 14 CYS 14 A PHE 15 n 15 PHE 15 A THR 16 n 16 THR 16 A ASN 17 n 17 ASN 17 A ALA 18 n 18 ALA 18 A SER 19 n 19 SER 19 A CYS 20 n 20 CYS 20 A ASP 21 n 21 ASP 21 A ASP 22 n 22 ASP 22 A HIS 23 n 23 HIS 23 A CYS 24 n 24 CYS 24 A LYS 25 n 25 LYS 25 A ASN 26 n 26 ASN 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A HIS 29 n 29 HIS 29 A LEU 30 n 30 LEU 30 A ILE 31 n 31 ILE 31 A SER 32 n 32 SER 32 A GLY 33 n 33 GLY 33 A THR 34 n 34 THR 34 A CYS 35 n 35 CYS 35 A HIS 36 n 36 HIS 36 A ASN 37 n 37 ASN 37 A TRP 38 n 38 TRP 38 A LYS 39 n 39 LYS 39 A CYS 40 n 40 CYS 40 A PHE 41 n 41 PHE 41 A CYS 42 n 42 CYS 42 A THR 43 n 43 THR 43 A GLN 44 n 44 GLN 44 A ASN 45 n 45 ASN 45 A CYS 46 n 46 CYS 46 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O HIS 5 A O HIS 5 A N CYS 42 A N CYS 42 A N PHE 41 A N PHE 41 A O THR 34 A O THR 34 1 A A OD2 HZ2 ASP LYS 21 25 1.43 1 A A O H CYS CYS 20 24 1.50 1 A A O H HIS LYS 23 27 1.56 1 A A H O HIS LYS 36 39 1.59 2 A A HZ3 O LYS ILE 25 31 1.38 2 A A O H CYS CYS 20 24 1.50 2 A A O H HIS LYS 23 27 1.55 2 A A OH HG TYR SER 10 19 1.58 3 A A O H CYS CYS 20 24 1.51 3 A A O H HIS LYS 23 27 1.59 4 A A HH21 OG ARG SER 11 19 1.35 4 A A HZ2 O LYS ILE 25 31 1.44 4 A A OH HG TYR SER 10 19 1.45 4 A A O H CYS CYS 20 24 1.49 4 A A O H HIS LYS 23 27 1.59 5 A A O HG1 SER THR 32 43 1.51 5 A A O H HIS LYS 23 27 1.59 5 A A O H CYS CYS 20 24 1.60 6 A A OD2 HZ2 ASP LYS 21 25 1.47 6 A A O HZ1 THR LYS 9 27 1.51 6 A A O H HIS LYS 23 27 1.52 6 A A H O HIS LYS 36 39 1.53 7 A A O H CYS CYS 20 24 1.49 7 A A H O CYS GLN 3 44 1.55 7 A A O H HIS CYS 5 42 1.56 7 A A O H HIS LYS 23 27 1.59 8 A A O H CYS CYS 20 24 1.49 8 A A O H HIS CYS 5 42 1.52 8 A A O H HIS LYS 23 27 1.52 8 A A OH HG TYR SER 10 19 1.56 9 A A O H CYS CYS 20 24 1.52 10 A A O H CYS CYS 20 24 1.52 10 A A O H HIS LYS 23 27 1.59 11 A A O H HIS LYS 23 27 1.49 11 A A O H CYS CYS 20 24 1.53 12 A A HZ3 O LYS ILE 25 31 1.35 12 A A O HZ3 THR LYS 9 27 1.44 12 A A O HG THR SER 16 19 1.51 12 A A O H CYS CYS 20 24 1.53 12 A A O H HIS LYS 23 27 1.56 13 A A HZ1 O LYS ILE 25 31 1.52 13 A A O H CYS CYS 20 24 1.55 13 A A O H HIS LYS 23 27 1.58 13 A A H O CYS GLN 3 44 1.59 14 A A OD1 HZ3 ASP LYS 21 25 1.47 14 A A OE1 HE2 GLU HIS 4 36 1.57 15 A A OD2 HZ3 ASP LYS 21 25 1.45 15 A A H O HIS LYS 36 39 1.51 15 A A O H HIS LYS 23 27 1.52 15 A A O HZ3 THR LYS 9 27 1.53 16 A A O H CYS CYS 20 24 1.55 16 A A O H HIS LYS 23 27 1.60 17 A A O HG THR SER 16 19 1.39 17 A A HZ1 O LYS ILE 25 31 1.41 17 A A O H CYS CYS 20 24 1.51 17 A A H O HIS CYS 5 42 1.54 17 A A O H HIS LYS 23 27 1.58 18 A A HZ2 O LYS ILE 25 31 1.35 18 A A O H CYS CYS 20 24 1.46 19 A A O HG THR SER 16 19 1.42 19 A A O H HIS LYS 23 27 1.54 19 A A O H CYS CYS 20 24 1.55 20 A A OD2 HZ2 ASP LYS 21 25 1.47 20 A A O H CYS CYS 20 24 1.50 1 A THR 9 -107.41 63.34 1 A TYR 10 -107.20 -169.05 1 A HIS 29 -38.63 72.03 2 A THR 9 -105.95 60.41 2 A TYR 10 -106.22 -164.66 2 A ARG 11 -108.35 -150.29 2 A HIS 29 -27.35 75.74 3 A THR 9 -105.62 56.79 3 A HIS 29 -27.51 74.02 3 A ASN 37 62.63 -76.11 3 A TRP 38 -152.85 20.73 4 A THR 9 -106.32 58.44 4 A TYR 10 -107.98 -168.05 4 A HIS 29 -28.24 76.60 4 A ASN 37 62.22 -76.26 4 A TRP 38 -148.83 13.18 5 A ASP 8 -82.62 33.83 5 A HIS 29 -38.03 70.38 5 A LEU 30 -109.28 -167.31 5 A HIS 36 -110.04 76.36 5 A ASN 37 75.03 -76.46 6 A THR 9 -107.14 54.26 6 A TYR 10 -106.36 -163.74 6 A ARG 11 -107.56 -149.70 6 A HIS 29 -29.41 75.18 7 A THR 9 -105.70 70.96 7 A TYR 10 -107.83 -169.40 7 A PHE 15 73.31 -59.03 7 A HIS 29 -25.86 73.11 8 A THR 9 -105.60 56.39 8 A HIS 29 -29.45 76.00 8 A ASN 37 60.50 -74.87 8 A TRP 38 -145.35 10.59 9 A THR 9 -108.07 57.80 9 A ASP 21 -45.42 -72.49 9 A HIS 29 -28.12 76.48 9 A ASN 37 63.28 -75.34 10 A THR 9 -107.87 48.27 10 A TYR 10 -107.08 -168.36 10 A ARG 11 -106.73 -150.46 10 A HIS 29 -29.26 71.93 10 A ASN 37 46.92 -78.26 10 A TRP 38 -147.97 30.60 11 A THR 9 -145.11 -43.19 11 A HIS 29 -39.09 69.99 11 A HIS 36 -96.65 -155.03 11 A ASN 37 -56.97 78.21 12 A THR 9 -107.62 60.26 12 A TYR 10 -107.33 -166.64 12 A HIS 29 -28.63 73.38 12 A ASN 37 67.12 -78.95 12 A TRP 38 -158.38 26.89 13 A THR 9 -107.92 58.75 13 A HIS 29 -28.05 71.60 14 A HIS 29 -31.89 70.47 14 A ASN 37 25.57 66.66 15 A THR 9 -108.27 54.57 15 A TYR 10 -106.62 -163.92 15 A ARG 11 -108.32 -149.68 15 A HIS 29 -29.57 76.09 16 A THR 9 -107.01 68.73 16 A HIS 29 -30.01 72.05 16 A HIS 36 -108.43 -152.58 16 A ASN 37 -62.34 76.49 17 A THR 9 -107.11 73.73 17 A PHE 15 -101.50 -67.78 17 A HIS 29 -28.69 73.38 17 A HIS 36 -116.85 -151.68 17 A ASN 37 -59.72 75.16 18 A THR 9 -107.16 57.83 18 A HIS 29 -28.96 70.50 18 A SER 32 -164.10 -161.86 18 A HIS 36 -95.73 -149.66 18 A ASN 37 -62.37 73.13 19 A THR 9 -106.30 63.57 19 A PHE 15 -121.35 -51.91 19 A SER 19 -50.92 -72.84 19 A HIS 29 -31.36 72.86 19 A HIS 36 -117.30 -155.12 19 A ASN 37 -60.65 80.04 20 A THR 9 -106.24 61.30 20 A TYR 10 -108.20 -159.13 20 A ARG 11 -109.16 -142.00 20 A PHE 15 -123.96 -52.08 20 A HIS 29 -30.08 73.85 NMR Solution Structure of Pisum sativum defensin 1 (Psd1) 1 N N A THR 16 A THR 16 HELX_P A ALA 28 A ALA 28 1 1 13 disulf 2.026 A CYS 3 A SG CYS 3 1_555 A CYS 46 A SG CYS 46 1_555 disulf 2.031 A CYS 14 A SG CYS 14 1_555 A CYS 35 A SG CYS 35 1_555 disulf 2.029 A CYS 20 A SG CYS 20 1_555 A CYS 40 A SG CYS 40 1_555 disulf 2.036 A CYS 24 A SG CYS 24 1_555 A CYS 42 A SG CYS 42 1_555 ANTIFUNGAL PROTEIN PLANT DEFENSIN, CYS-RICH, ANTIFUNGAL, ANTIFUNGAL PROTEIN 1JKZ PDB 1 1JKZ 1 46 1JKZ 1 46 1JKZ A 1 1 46 3 anti-parallel anti-parallel A THR 2 A THR 2 A LEU 6 A LEU 6 A LYS 39 A LYS 39 A ASN 45 A ASN 45 A GLY 33 A GLY 33 A HIS 36 A HIS 36