0.007743 0.004470 0.000000 0.000000 0.008940 0.000000 0.000000 0.000000 0.012355 0.00000 0.00000 0.00000 Carfi, A. Willis, S.H. Whitbeck, J.C. Krummenacker, C. Cohen, G.H. Eisenberg, R.J. Wiley, D.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 129.154 129.154 80.940 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Mol.Cell MOCEFL 2168 1097-2765 8 169 179 10.1016/S1097-2765(01)00298-2 11511370 Herpes simplex virus glycoprotein D bound to the human receptor HveA. 2001 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 87 427 436 10.1016/S0092-8674(00)81363-X Herpes simplex virus-1 entry into cells mediated by a novel member of the TNF/NGF receptor family 1996 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 monochromator CCD 2000-05-19 ADSC QUANTUM 4 GRAPHITE SINGLE WAVELENGTH M x-ray 1 0.9196 1.0 A1 CHESS 0.9196 SYNCHROTRON CHESS BEAMLINE A1 17767.955 HERPESVIRUS ENTRY MEDIATOR HVEA-162 ECTODOMAIN OF THE FULL PROTEIN 1 man polymer 32315.697 GLYCOPROTEIN D GD-285 C-TERMINAL TRUNCATION AT RESIDUE 285 1 man polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 96.063 SULFATE ION 5 syn non-polymer 18.015 water 49 nat water no no LPSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAV CGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQHQTKCSWLVTKAGAGTSS SHHHHHH LPSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAV CGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQHQTKCSWLVTKAGAGTSS SHHHHHH B polypeptide(L) no no KYALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQI VRGASEDVRKQPYNLTIAWFRMGGNCAIPITVMEYTECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFET AGTYLRLVKINDWTEITQFILEHRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIAG WHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGTHHHHH KYALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQI VRGASEDVRKQPYNLTIAWFRMGGNCAIPITVMEYTECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFET AGTYLRLVKINDWTEITQFILEHRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIAG WHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGTHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Herpes simplex virus type 1 Simplexvirus fall armyworm Spodoptera sample 10298 Human herpesvirus 1 7108 Spodoptera frugiperda BACULOVIRUS human Homo fall armyworm Spodoptera sample 9606 Homo sapiens 7108 Spodoptera frugiperda BACULOVIRUS 1 3.89 68.36 VAPOR DIFFUSION, SITTING DROP 8 1.8M Ammonium Sulfate and 5% Peg400 and Tris-HCL 100mM pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Atomic model Data collection Derived calculations Structure summary 1 0 2001-09-26 1 1 2008-04-27 1 2 2011-07-13 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id Y NAG 366 n C NAG 1 Y NAG 367 n C NAG 2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Residues 1 to 3, 93,94 and 106 to 167 including 5 C-terminus HIS tag residues in chain B, and residues 260 to 290 that includes 5 C-terimus HIS tag residues were not visible in the electron density maps due to disorder Weak or no electron density was observed for the side chains of the following residues: Chain B residues: 5, 6, 18, 31, 71, 95 and 96. Chain A residues: 16, 18, 20, 21, 35, 89, 91, 186, 196 and 259 RCSB Y RCSB 2001-07-17 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 3 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 3 O1 HO4 sing n n SO4 SULFATE ION HOH water SO4 526 4 SO4 SO4 526 B SO4 529 4 SO4 SO4 529 B SO4 525 4 SO4 SO4 525 A SO4 527 4 SO4 SO4 527 A SO4 528 4 SO4 SO4 528 A HOH 3 5 HOH HOH 530 B HOH 23 5 HOH HOH 531 B HOH 27 5 HOH HOH 532 B HOH 37 5 HOH HOH 533 B HOH 1 5 HOH HOH 529 A HOH 2 5 HOH HOH 530 A HOH 4 5 HOH HOH 531 A HOH 5 5 HOH HOH 532 A HOH 6 5 HOH HOH 533 A HOH 7 5 HOH HOH 534 A HOH 8 5 HOH HOH 535 A HOH 9 5 HOH HOH 536 A HOH 10 5 HOH HOH 537 A HOH 11 5 HOH HOH 538 A HOH 12 5 HOH HOH 539 A HOH 13 5 HOH HOH 540 A HOH 14 5 HOH HOH 541 A HOH 15 5 HOH HOH 542 A HOH 16 5 HOH HOH 543 A HOH 17 5 HOH HOH 544 A HOH 18 5 HOH HOH 545 A HOH 19 5 HOH HOH 546 A HOH 20 5 HOH HOH 547 A HOH 21 5 HOH HOH 548 A HOH 22 5 HOH HOH 549 A HOH 24 5 HOH HOH 550 A HOH 25 5 HOH HOH 551 A HOH 26 5 HOH HOH 552 A HOH 28 5 HOH HOH 553 A HOH 29 5 HOH HOH 554 A HOH 30 5 HOH HOH 555 A HOH 31 5 HOH HOH 556 A HOH 32 5 HOH HOH 557 A HOH 33 5 HOH HOH 558 A HOH 34 5 HOH HOH 559 A HOH 35 5 HOH HOH 560 A HOH 36 5 HOH HOH 561 A HOH 38 5 HOH HOH 562 A HOH 39 5 HOH HOH 563 A HOH 40 5 HOH HOH 564 A HOH 41 5 HOH HOH 565 A HOH 42 5 HOH HOH 566 A HOH 43 5 HOH HOH 567 A HOH 44 5 HOH HOH 568 A HOH 45 5 HOH HOH 569 A HOH 46 5 HOH HOH 570 A HOH 47 5 HOH HOH 571 A HOH 48 5 HOH HOH 572 A HOH 49 5 HOH HOH 573 A n 1 1 B n 2 2 B n 3 3 B CYS 4 n 4 CYS 4 B LYS 5 n 5 LYS 5 B GLU 6 n 6 GLU 6 B ASP 7 n 7 ASP 7 B GLU 8 n 8 GLU 8 B TYR 9 n 9 TYR 9 B PRO 10 n 10 PRO 10 B VAL 11 n 11 VAL 11 B GLY 12 n 12 GLY 12 B SER 13 n 13 SER 13 B GLU 14 n 14 GLU 14 B CYS 15 n 15 CYS 15 B CYS 16 n 16 CYS 16 B PRO 17 n 17 PRO 17 B LYS 18 n 18 LYS 18 B CYS 19 n 19 CYS 19 B SER 20 n 20 SER 20 B PRO 21 n 21 PRO 21 B GLY 22 n 22 GLY 22 B TYR 23 n 23 TYR 23 B ARG 24 n 24 ARG 24 B VAL 25 n 25 VAL 25 B LYS 26 n 26 LYS 26 B GLU 27 n 27 GLU 27 B ALA 28 n 28 ALA 28 B CYS 29 n 29 CYS 29 B GLY 30 n 30 GLY 30 B GLU 31 n 31 GLU 31 B LEU 32 n 32 LEU 32 B THR 33 n 33 THR 33 B GLY 34 n 34 GLY 34 B THR 35 n 35 THR 35 B VAL 36 n 36 VAL 36 B CYS 37 n 37 CYS 37 B GLU 38 n 38 GLU 38 B PRO 39 n 39 PRO 39 B CYS 40 n 40 CYS 40 B PRO 41 n 41 PRO 41 B PRO 42 n 42 PRO 42 B GLY 43 n 43 GLY 43 B THR 44 n 44 THR 44 B TYR 45 n 45 TYR 45 B ILE 46 n 46 ILE 46 B ALA 47 n 47 ALA 47 B HIS 48 n 48 HIS 48 B LEU 49 n 49 LEU 49 B ASN 50 n 50 ASN 50 B GLY 51 n 51 GLY 51 B LEU 52 n 52 LEU 52 B SER 53 n 53 SER 53 B LYS 54 n 54 LYS 54 B CYS 55 n 55 CYS 55 B LEU 56 n 56 LEU 56 B GLN 57 n 57 GLN 57 B CYS 58 n 58 CYS 58 B GLN 59 n 59 GLN 59 B MET 60 n 60 MET 60 B CYS 61 n 61 CYS 61 B ASP 62 n 62 ASP 62 B PRO 63 n 63 PRO 63 B ALA 64 n 64 ALA 64 B MET 65 n 65 MET 65 B GLY 66 n 66 GLY 66 B LEU 67 n 67 LEU 67 B ARG 68 n 68 ARG 68 B ALA 69 n 69 ALA 69 B SER 70 n 70 SER 70 B ARG 71 n 71 ARG 71 B ASN 72 n 72 ASN 72 B CYS 73 n 73 CYS 73 B SER 74 n 74 SER 74 B ARG 75 n 75 ARG 75 B THR 76 n 76 THR 76 B GLU 77 n 77 GLU 77 B ASN 78 n 78 ASN 78 B ALA 79 n 79 ALA 79 B VAL 80 n 80 VAL 80 B CYS 81 n 81 CYS 81 B GLY 82 n 82 GLY 82 B CYS 83 n 83 CYS 83 B SER 84 n 84 SER 84 B PRO 85 n 85 PRO 85 B GLY 86 n 86 GLY 86 B HIS 87 n 87 HIS 87 B PHE 88 n 88 PHE 88 B CYS 89 n 89 CYS 89 B ILE 90 n 90 ILE 90 B VAL 91 n 91 VAL 91 B GLN 92 n 92 GLN 92 B n 93 93 B n 94 94 B ASP 95 n 95 ASP 95 B HIS 96 n 96 HIS 96 B CYS 97 n 97 CYS 97 B ALA 98 n 98 ALA 98 B ALA 99 n 99 ALA 99 B CYS 100 n 100 CYS 100 B ARG 101 n 101 ARG 101 B ALA 102 n 102 ALA 102 B TYR 103 n 103 TYR 103 B ALA 104 n 104 ALA 104 B THR 105 n 105 THR 105 B n 106 106 B n 107 107 B n 108 108 B n 109 109 B n 110 110 B n 111 111 B n 112 112 B n 113 113 B n 114 114 B n 115 115 B n 116 116 B n 117 117 B n 118 118 B n 119 119 B n 120 120 B n 121 121 B n 122 122 B n 123 123 B n 124 124 B n 125 125 B n 126 126 B n 127 127 B n 128 128 B n 129 129 B n 130 130 B n 131 131 B n 132 132 B n 133 133 B n 134 134 B n 135 135 B n 136 136 B n 137 137 B n 138 138 B n 139 139 B n 140 140 B n 141 141 B n 142 142 B n 143 143 B n 144 144 B n 145 145 B n 146 146 B n 147 147 B n 148 148 B n 149 149 B n 150 150 B n 151 151 B n 152 152 B n 153 153 B n 154 154 B n 155 155 B n 156 156 B n 157 157 B n 158 158 B n 159 159 B n 160 160 B n 161 161 B n 162 162 B n 163 163 B n 164 164 B n 165 165 B n 166 166 B n 167 167 B LYS 1 n 1 LYS 1 A TYR 2 n 2 TYR 2 A ALA 3 n 3 ALA 3 A LEU 4 n 4 LEU 4 A ALA 5 n 5 ALA 5 A ASP 6 n 6 ASP 6 A ALA 7 n 7 ALA 7 A SER 8 n 8 SER 8 A LEU 9 n 9 LEU 9 A LYS 10 n 10 LYS 10 A MET 11 n 11 MET 11 A ALA 12 n 12 ALA 12 A ASP 13 n 13 ASP 13 A PRO 14 n 14 PRO 14 A ASN 15 n 15 ASN 15 A ARG 16 n 16 ARG 16 A PHE 17 n 17 PHE 17 A ARG 18 n 18 ARG 18 A GLY 19 n 19 GLY 19 A LYS 20 n 20 LYS 20 A ASP 21 n 21 ASP 21 A LEU 22 n 22 LEU 22 A PRO 23 n 23 PRO 23 A VAL 24 n 24 VAL 24 A LEU 25 n 25 LEU 25 A ASP 26 n 26 ASP 26 A GLN 27 n 27 GLN 27 A LEU 28 n 28 LEU 28 A THR 29 n 29 THR 29 A ASP 30 n 30 ASP 30 A PRO 31 n 31 PRO 31 A PRO 32 n 32 PRO 32 A GLY 33 n 33 GLY 33 A VAL 34 n 34 VAL 34 A ARG 35 n 35 ARG 35 A ARG 36 n 36 ARG 36 A VAL 37 n 37 VAL 37 A TYR 38 n 38 TYR 38 A HIS 39 n 39 HIS 39 A ILE 40 n 40 ILE 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A GLY 43 n 43 GLY 43 A LEU 44 n 44 LEU 44 A PRO 45 n 45 PRO 45 A ASP 46 n 46 ASP 46 A PRO 47 n 47 PRO 47 A PHE 48 n 48 PHE 48 A GLN 49 n 49 GLN 49 A PRO 50 n 50 PRO 50 A PRO 51 n 51 PRO 51 A SER 52 n 52 SER 52 A LEU 53 n 53 LEU 53 A PRO 54 n 54 PRO 54 A ILE 55 n 55 ILE 55 A THR 56 n 56 THR 56 A VAL 57 n 57 VAL 57 A TYR 58 n 58 TYR 58 A TYR 59 n 59 TYR 59 A ALA 60 n 60 ALA 60 A VAL 61 n 61 VAL 61 A LEU 62 n 62 LEU 62 A GLU 63 n 63 GLU 63 A ARG 64 n 64 ARG 64 A ALA 65 n 65 ALA 65 A CYS 66 n 66 CYS 66 A ARG 67 n 67 ARG 67 A SER 68 n 68 SER 68 A VAL 69 n 69 VAL 69 A LEU 70 n 70 LEU 70 A LEU 71 n 71 LEU 71 A ASN 72 n 72 ASN 72 A ALA 73 n 73 ALA 73 A PRO 74 n 74 PRO 74 A SER 75 n 75 SER 75 A GLU 76 n 76 GLU 76 A ALA 77 n 77 ALA 77 A PRO 78 n 78 PRO 78 A GLN 79 n 79 GLN 79 A ILE 80 n 80 ILE 80 A VAL 81 n 81 VAL 81 A ARG 82 n 82 ARG 82 A GLY 83 n 83 GLY 83 A ALA 84 n 84 ALA 84 A SER 85 n 85 SER 85 A GLU 86 n 86 GLU 86 A ASP 87 n 87 ASP 87 A VAL 88 n 88 VAL 88 A ARG 89 n 89 ARG 89 A LYS 90 n 90 LYS 90 A GLN 91 n 91 GLN 91 A PRO 92 n 92 PRO 92 A TYR 93 n 93 TYR 93 A ASN 94 n 94 ASN 94 A LEU 95 n 95 LEU 95 A THR 96 n 96 THR 96 A ILE 97 n 97 ILE 97 A ALA 98 n 98 ALA 98 A TRP 99 n 99 TRP 99 A PHE 100 n 100 PHE 100 A ARG 101 n 101 ARG 101 A MET 102 n 102 MET 102 A GLY 103 n 103 GLY 103 A GLY 104 n 104 GLY 104 A ASN 105 n 105 ASN 105 A CYS 106 n 106 CYS 106 A ALA 107 n 107 ALA 107 A ILE 108 n 108 ILE 108 A PRO 109 n 109 PRO 109 A ILE 110 n 110 ILE 110 A THR 111 n 111 THR 111 A VAL 112 n 112 VAL 112 A MET 113 n 113 MET 113 A GLU 114 n 114 GLU 114 A TYR 115 n 115 TYR 115 A THR 116 n 116 THR 116 A GLU 117 n 117 GLU 117 A CYS 118 n 118 CYS 118 A SER 119 n 119 SER 119 A TYR 120 n 120 TYR 120 A ASN 121 n 121 ASN 121 A LYS 122 n 122 LYS 122 A SER 123 n 123 SER 123 A LEU 124 n 124 LEU 124 A GLY 125 n 125 GLY 125 A ALA 126 n 126 ALA 126 A CYS 127 n 127 CYS 127 A PRO 128 n 128 PRO 128 A ILE 129 n 129 ILE 129 A ARG 130 n 130 ARG 130 A THR 131 n 131 THR 131 A GLN 132 n 132 GLN 132 A PRO 133 n 133 PRO 133 A ARG 134 n 134 ARG 134 A TRP 135 n 135 TRP 135 A ASN 136 n 136 ASN 136 A TYR 137 n 137 TYR 137 A TYR 138 n 138 TYR 138 A ASP 139 n 139 ASP 139 A SER 140 n 140 SER 140 A PHE 141 n 141 PHE 141 A SER 142 n 142 SER 142 A ALA 143 n 143 ALA 143 A VAL 144 n 144 VAL 144 A SER 145 n 145 SER 145 A GLU 146 n 146 GLU 146 A ASP 147 n 147 ASP 147 A ASN 148 n 148 ASN 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A PHE 151 n 151 PHE 151 A LEU 152 n 152 LEU 152 A MET 153 n 153 MET 153 A HIS 154 n 154 HIS 154 A ALA 155 n 155 ALA 155 A PRO 156 n 156 PRO 156 A ALA 157 n 157 ALA 157 A PHE 158 n 158 PHE 158 A GLU 159 n 159 GLU 159 A THR 160 n 160 THR 160 A ALA 161 n 161 ALA 161 A GLY 162 n 162 GLY 162 A THR 163 n 163 THR 163 A TYR 164 n 164 TYR 164 A LEU 165 n 165 LEU 165 A ARG 166 n 166 ARG 166 A LEU 167 n 167 LEU 167 A VAL 168 n 168 VAL 168 A LYS 169 n 169 LYS 169 A ILE 170 n 170 ILE 170 A ASN 171 n 171 ASN 171 A ASP 172 n 172 ASP 172 A TRP 173 n 173 TRP 173 A THR 174 n 174 THR 174 A GLU 175 n 175 GLU 175 A ILE 176 n 176 ILE 176 A THR 177 n 177 THR 177 A GLN 178 n 178 GLN 178 A PHE 179 n 179 PHE 179 A ILE 180 n 180 ILE 180 A LEU 181 n 181 LEU 181 A GLU 182 n 182 GLU 182 A HIS 183 n 183 HIS 183 A ARG 184 n 184 ARG 184 A ALA 185 n 185 ALA 185 A LYS 186 n 186 LYS 186 A GLY 187 n 187 GLY 187 A SER 188 n 188 SER 188 A CYS 189 n 189 CYS 189 A LYS 190 n 190 LYS 190 A TYR 191 n 191 TYR 191 A ALA 192 n 192 ALA 192 A LEU 193 n 193 LEU 193 A PRO 194 n 194 PRO 194 A LEU 195 n 195 LEU 195 A ARG 196 n 196 ARG 196 A ILE 197 n 197 ILE 197 A PRO 198 n 198 PRO 198 A PRO 199 n 199 PRO 199 A SER 200 n 200 SER 200 A ALA 201 n 201 ALA 201 A CYS 202 n 202 CYS 202 A LEU 203 n 203 LEU 203 A SER 204 n 204 SER 204 A PRO 205 n 205 PRO 205 A GLN 206 n 206 GLN 206 A ALA 207 n 207 ALA 207 A TYR 208 n 208 TYR 208 A GLN 209 n 209 GLN 209 A GLN 210 n 210 GLN 210 A GLY 211 n 211 GLY 211 A VAL 212 n 212 VAL 212 A THR 213 n 213 THR 213 A VAL 214 n 214 VAL 214 A ASP 215 n 215 ASP 215 A SER 216 n 216 SER 216 A ILE 217 n 217 ILE 217 A GLY 218 n 218 GLY 218 A MET 219 n 219 MET 219 A LEU 220 n 220 LEU 220 A PRO 221 n 221 PRO 221 A ARG 222 n 222 ARG 222 A PHE 223 n 223 PHE 223 A ILE 224 n 224 ILE 224 A PRO 225 n 225 PRO 225 A GLU 226 n 226 GLU 226 A ASN 227 n 227 ASN 227 A GLN 228 n 228 GLN 228 A ARG 229 n 229 ARG 229 A THR 230 n 230 THR 230 A VAL 231 n 231 VAL 231 A ALA 232 n 232 ALA 232 A VAL 233 n 233 VAL 233 A TYR 234 n 234 TYR 234 A SER 235 n 235 SER 235 A LEU 236 n 236 LEU 236 A LYS 237 n 237 LYS 237 A ILE 238 n 238 ILE 238 A ALA 239 n 239 ALA 239 A GLY 240 n 240 GLY 240 A TRP 241 n 241 TRP 241 A HIS 242 n 242 HIS 242 A GLY 243 n 243 GLY 243 A PRO 244 n 244 PRO 244 A LYS 245 n 245 LYS 245 A ALA 246 n 246 ALA 246 A PRO 247 n 247 PRO 247 A TYR 248 n 248 TYR 248 A THR 249 n 249 THR 249 A SER 250 n 250 SER 250 A THR 251 n 251 THR 251 A LEU 252 n 252 LEU 252 A LEU 253 n 253 LEU 253 A PRO 254 n 254 PRO 254 A PRO 255 n 255 PRO 255 A GLU 256 n 256 GLU 256 A LEU 257 n 257 LEU 257 A SER 258 n 258 SER 258 A GLU 259 n 259 GLU 259 A n 260 260 A n 261 261 A n 262 262 A n 263 263 A n 264 264 A n 265 265 A n 266 266 A n 267 267 A n 268 268 A n 269 269 A n 270 270 A n 271 271 A n 272 272 A n 273 273 A n 274 274 A n 275 275 A n 276 276 A n 277 277 A n 278 278 A n 279 279 A n 280 280 A n 281 281 A n 282 282 A n 283 283 A n 284 284 A n 285 285 A n 286 286 A n 287 287 A n 288 288 A n 289 289 A n 290 290 A author_defined_assembly 2 dimeric A ASN 94 GLYCOSYLATION SITE B ASN 94 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N ARG 24 A N ARG 24 B O GLU 38 A O GLU 38 B N CYS 37 A N CYS 37 A O GLN 27 B O GLN 27 B N TYR 45 A N TYR 45 B O LEU 56 A O LEU 56 B N ARG 71 A N ARG 71 B O VAL 80 A O VAL 80 B N PHE 88 A N PHE 88 B O ARG 101 A O ARG 101 A N TYR 58 B N TYR 58 A O GLN 178 B O GLN 178 A O PHE 179 B O PHE 179 A N TYR 164 B N TYR 164 A O LEU 167 B O LEU 167 A N ALA 98 B N ALA 98 A N TRP 99 B N TRP 99 A O ILE 110 B O ILE 110 A N THR 116 B N THR 116 A O ILE 129 B O ILE 129 A O ARG 130 B O ARG 130 A N VAL 37 B N VAL 37 A N TYR 58 B N TYR 58 A O GLN 178 B O GLN 178 A O PHE 179 B O PHE 179 A N TYR 164 B N TYR 164 A O LEU 167 B O LEU 167 A N ALA 98 B N ALA 98 A N TRP 99 B N TRP 99 A O ILE 110 B O ILE 110 A N VAL 112 B N VAL 112 A O ARG 134 B O ARG 134 A N TRP 135 B N TRP 135 A O LEU 220 B O LEU 220 A N ALA 143 B N ALA 143 A O LEU 152 B O LEU 152 A O PHE 151 B O PHE 151 A N LEU 71 B N LEU 71 A N LEU 70 B N LEU 70 A O TYR 248 B O TYR 248 1 B LEU 1 A LEU 1 1 Y 1 B PRO 2 A PRO 2 1 Y 1 B SER 3 A SER 3 1 Y 1 B ASP 93 A ASP 93 1 Y 1 B GLY 94 A GLY 94 1 Y 1 B SER 106 A SER 106 1 Y 1 B SER 107 A SER 107 1 Y 1 B PRO 108 A PRO 108 1 Y 1 B GLY 109 A GLY 109 1 Y 1 B GLN 110 A GLN 110 1 Y 1 B ARG 111 A ARG 111 1 Y 1 B VAL 112 A VAL 112 1 Y 1 B GLN 113 A GLN 113 1 Y 1 B LYS 114 A LYS 114 1 Y 1 B GLY 115 A GLY 115 1 Y 1 B GLY 116 A GLY 116 1 Y 1 B THR 117 A THR 117 1 Y 1 B GLU 118 A GLU 118 1 Y 1 B SER 119 A SER 119 1 Y 1 B GLN 120 A GLN 120 1 Y 1 B ASP 121 A ASP 121 1 Y 1 B THR 122 A THR 122 1 Y 1 B LEU 123 A LEU 123 1 Y 1 B CYS 124 A CYS 124 1 Y 1 B GLN 125 A GLN 125 1 Y 1 B ASN 126 A ASN 126 1 Y 1 B CYS 127 A CYS 127 1 Y 1 B PRO 128 A PRO 128 1 Y 1 B PRO 129 A PRO 129 1 Y 1 B GLY 130 A GLY 130 1 Y 1 B THR 131 A THR 131 1 Y 1 B PHE 132 A PHE 132 1 Y 1 B SER 133 A SER 133 1 Y 1 B PRO 134 A PRO 134 1 Y 1 B ASN 135 A ASN 135 1 Y 1 B GLY 136 A GLY 136 1 Y 1 B THR 137 A THR 137 1 Y 1 B LEU 138 A LEU 138 1 Y 1 B GLU 139 A GLU 139 1 Y 1 B GLU 140 A GLU 140 1 Y 1 B CYS 141 A CYS 141 1 Y 1 B GLN 142 A GLN 142 1 Y 1 B HIS 143 A HIS 143 1 Y 1 B GLN 144 A GLN 144 1 Y 1 B THR 145 A THR 145 1 Y 1 B LYS 146 A LYS 146 1 Y 1 B CYS 147 A CYS 147 1 Y 1 B SER 148 A SER 148 1 Y 1 B TRP 149 A TRP 149 1 Y 1 B LEU 150 A LEU 150 1 Y 1 B VAL 151 A VAL 151 1 Y 1 B THR 152 A THR 152 1 Y 1 B LYS 153 A LYS 153 1 Y 1 B ALA 154 A ALA 154 1 Y 1 B GLY 155 A GLY 155 1 Y 1 B ALA 156 A ALA 156 1 Y 1 B GLY 157 A GLY 157 1 Y 1 B THR 158 A THR 158 1 Y 1 B SER 159 A SER 159 1 Y 1 B SER 160 A SER 160 1 Y 1 B SER 161 A SER 161 1 Y 1 B HIS 162 A HIS 162 1 Y 1 B HIS 163 A HIS 163 1 Y 1 B HIS 164 A HIS 164 1 Y 1 B HIS 165 A HIS 165 1 Y 1 B HIS 166 A HIS 166 1 Y 1 B HIS 167 A HIS 167 1 Y 1 A THR 260 B THR 260 1 Y 1 A PRO 261 B PRO 261 1 Y 1 A ASN 262 B ASN 262 1 Y 1 A ALA 263 B ALA 263 1 Y 1 A THR 264 B THR 264 1 Y 1 A GLN 265 B GLN 265 1 Y 1 A PRO 266 B PRO 266 1 Y 1 A GLU 267 B GLU 267 1 Y 1 A LEU 268 B LEU 268 1 Y 1 A ALA 269 B ALA 269 1 Y 1 A PRO 270 B PRO 270 1 Y 1 A GLU 271 B GLU 271 1 Y 1 A ASP 272 B ASP 272 1 Y 1 A PRO 273 B PRO 273 1 Y 1 A GLU 274 B GLU 274 1 Y 1 A ASP 275 B ASP 275 1 Y 1 A SER 276 B SER 276 1 Y 1 A ALA 277 B ALA 277 1 Y 1 A LEU 278 B LEU 278 1 Y 1 A LEU 279 B LEU 279 1 Y 1 A GLU 280 B GLU 280 1 Y 1 A ASP 281 B ASP 281 1 Y 1 A PRO 282 B PRO 282 1 Y 1 A VAL 283 B VAL 283 1 Y 1 A GLY 284 B GLY 284 1 Y 1 A THR 285 B THR 285 1 Y 1 A HIS 286 B HIS 286 1 Y 1 A HIS 287 B HIS 287 1 Y 1 A HIS 288 B HIS 288 1 Y 1 A HIS 289 B HIS 289 1 Y 1 A HIS 290 B HIS 290 1 Y 1 A SER 258 13.42 1 A ARG 89 0.126 SIDE CHAIN 1 A A C N SER GLU 258 259 1.19 1 -16.85 2.20 113.40 96.55 B B B CA CB CG GLU GLU GLU 6 6 6 N 1 19.81 2.00 118.30 138.11 B B B CG CD OE1 GLU GLU GLU 6 6 6 N 1 -19.68 2.00 118.30 98.62 B B B CG CD OE2 GLU GLU GLU 6 6 6 N 1 -11.07 1.80 114.00 102.93 B B B CA CB SG CYS CYS CYS 29 29 29 N 1 14.55 2.00 110.40 124.95 B B B CB CA C HIS HIS HIS 96 96 96 N 1 18.22 1.80 110.60 128.82 A A A N CA CB GLU GLU GLU 86 86 86 N 1 15.17 2.20 113.40 128.57 A A A CA CB CG GLU GLU GLU 86 86 86 N 1 37.02 2.10 111.80 148.82 A A A CG CD NE ARG ARG ARG 89 89 89 N 1 20.50 2.40 116.70 137.20 A A A CG CD NE2 GLN GLN GLN 91 91 91 N 1 7.22 1.10 114.20 121.42 A A A CA CB SG CYS CYS CYS 202 202 202 N 1 15.00 2.20 117.20 132.20 A A A CA C N SER SER GLU 258 258 259 Y 1 -15.77 1.60 122.70 106.93 A A A O C N SER SER GLU 258 258 259 Y 1 B B CB CG GLU GLU 6 6 0.276 0.019 1.517 1.793 N 1 B B CG CD GLU GLU 6 6 0.680 0.015 1.515 2.195 N 1 B B CB CG ARG ARG 71 71 -0.348 0.027 1.521 1.173 N 1 A A CA CB GLU GLU 86 86 0.184 0.022 1.535 1.719 N 1 A A CB CG ASP ASP 87 87 -0.236 0.021 1.513 1.277 N 1 A A CD NE ARG ARG 89 89 -0.209 0.017 1.460 1.251 N 1 A A C N SER GLU 258 259 -0.145 0.023 1.336 1.191 Y 1 B GLU 6 -38.19 -37.61 1 B CYS 29 -48.49 -135.75 1 B ALA 64 -49.82 -73.16 1 B MET 65 -51.55 13.68 1 A PHE 17 -101.88 77.42 1 A ILE 40 -148.77 -53.01 1 A PRO 92 -48.64 160.61 1 A ALA 126 -119.09 55.59 1 A PRO 133 -38.67 118.17 1 A TYR 137 60.05 -37.23 1 A ASN 148 93.90 -8.74 1 A ALA 155 40.00 52.27 1 A ASN 171 54.80 -99.83 1 A PHE 223 -54.38 173.08 1 A SER 258 -69.82 -78.45 16.177 -11.423 -11.044 0 -11.423 22.846 0 mlf refinement with CNS 0.259 0.236 0.237 0.237 2.65 20 1094 22902 22562 5.0 99.7 random 1 1 MIRAS Engh & Huber 0.35 2.65 20 49 2867 53 0 2765 1.54616 .008 57 2.65 25 1JMA 24279 24260 2 2 0.068 1 11 5 99.7 0.346 2.65 20 5 1 99.7 data reduction DENZO data reduction TRUNCATE refinement CNS data scaling CCP4 (TRUNCATE) phasing CNS HERPESVIRUS ENTRY MEDIATOR, GLYCOPROTEIN D CRYSTAL STRUCTURE OF THE HERPES SIMPLEX VIRUS GLYCOPROTEIN D BOUND TO THE CELLULAR RECEPTOR HVEA/HVEM 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N A ASP 6 B ASP 6 HELX_P A MET 11 B MET 11 5 1 6 A GLU 76 B GLU 76 HELX_P A GLY 83 B GLY 83 1 2 8 A SER 85 B SER 85 HELX_P A LYS 90 B LYS 90 1 3 6 A ALA 157 B ALA 157 HELX_P A ALA 161 B ALA 161 5 4 5 A PRO 198 B PRO 198 HELX_P A CYS 202 B CYS 202 5 5 5 A SER 204 B SER 204 HELX_P A GLN 210 B GLN 210 1 6 7 A ILE 224 B ILE 224 HELX_P A ILE 238 B ILE 238 1 7 15 A PRO 254 B PRO 254 HELX_P A GLU 259 B GLU 259 1 8 6 disulf 2.037 B CYS 4 A SG CYS 4 1_555 B CYS 15 A SG CYS 15 1_555 disulf 2.018 B CYS 16 A SG CYS 16 1_555 B CYS 29 A SG CYS 29 1_555 disulf 2.042 B CYS 19 A SG CYS 19 1_555 B CYS 37 A SG CYS 37 1_555 disulf 2.034 B CYS 40 A SG CYS 40 1_555 B CYS 55 A SG CYS 55 1_555 disulf 2.040 B CYS 58 A SG CYS 58 1_555 B CYS 73 A SG CYS 73 1_555 disulf 2.044 B CYS 61 A SG CYS 61 1_555 B CYS 81 A SG CYS 81 1_555 disulf 2.039 B CYS 83 A SG CYS 83 1_555 B CYS 100 A SG CYS 100 1_555 disulf 2.047 B CYS 89 A SG CYS 89 1_555 B CYS 97 A SG CYS 97 1_555 disulf 2.060 A CYS 66 B SG CYS 66 1_555 A CYS 189 B SG CYS 189 1_555 disulf 2.040 A CYS 106 B SG CYS 106 1_555 A CYS 202 B SG CYS 202 1_555 disulf 2.049 A CYS 118 B SG CYS 118 1_555 A CYS 127 B SG CYS 127 1_555 covale 1.408 one N-Glycosylation A ASN 94 B ND2 ASN 94 1_555 C NAG 1 C C1 NAG 1_555 covale 1.385 both C NAG 1 C O4 NAG 1_555 C NAG 2 C C1 NAG 1_555 VIRAL PROTEIN V-type Ig molecule and TNFR superfamily, Viral protein A GLY 243 B GLY 243 1 A PRO 244 B PRO 244 0.94 TR14_HUMAN UNP 1 39 Q92956 LPSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAV CGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQHQTKCSWLVTKAGAGTSS S VGLD_HSV1P UNP 2 26 P57083 KYALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQI VRGASEDVRKQPYNLTIAWFRMGGNCAIPITVMEYTECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFET AGTYLRLVKINDWTEITQFILEHRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIAG WHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGT 39 199 1JMA 1 161 Q92956 B 1 1 161 26 310 1JMA 1 285 P57083 A 2 1 285 3 2 2 2 7 7 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel B TYR 23 A TYR 23 B GLU 27 A GLU 27 B VAL 36 A VAL 36 B PRO 39 A PRO 39 A GLN 27 B GLN 27 A LEU 28 B LEU 28 B THR 44 A THR 44 B TYR 45 A TYR 45 B LEU 56 A LEU 56 B GLN 57 A GLN 57 B LEU 67 A LEU 67 B ARG 71 A ARG 71 B VAL 80 A VAL 80 B CYS 83 A CYS 83 B HIS 87 A HIS 87 B VAL 91 A VAL 91 B ALA 99 A ALA 99 B ALA 102 A ALA 102 A THR 56 B THR 56 A LEU 62 B LEU 62 A TRP 173 B TRP 173 A HIS 183 B HIS 183 A GLY 162 B GLY 162 A ILE 170 B ILE 170 A TYR 93 B TYR 93 A GLY 103 B GLY 103 A CYS 106 B CYS 106 A CYS 118 B CYS 118 A ILE 129 B ILE 129 A THR 131 B THR 131 A ARG 35 B ARG 35 A VAL 37 B VAL 37 A THR 56 B THR 56 A LEU 62 B LEU 62 A TRP 173 B TRP 173 A HIS 183 B HIS 183 A GLY 162 B GLY 162 A ILE 170 B ILE 170 A TYR 93 B TYR 93 A GLY 103 B GLY 103 A CYS 106 B CYS 106 A CYS 118 B CYS 118 A ARG 134 B ARG 134 A TRP 135 B TRP 135 A LEU 220 B LEU 220 A PRO 221 B PRO 221 A SER 142 B SER 142 A VAL 144 B VAL 144 A PHE 151 B PHE 151 A HIS 154 B HIS 154 A SER 68 B SER 68 A LEU 71 B LEU 71 A TYR 248 B TYR 248 A THR 249 B THR 249 152 P 31 2 1