1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Pires, J.R. Taha-Nejad, F. Toepert, F. Ast, T. Hoffmuller, U. Schneider-Mergener, J. Kuhne, R. Macias, M.J. Oschkinat, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 314 1147 1156 10.1006/jmbi.2000.5199 11743730 Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope. 2001 10.2210/pdb1jmq/pdb pdb_00001jmq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 5360.021 65 KDA YES-ASSOCIATED PROTEIN L30K 1 man polymer 985.090 WW Domain Binding Protein-1 residues 147-156 1 syn polymer YAP65 WBP-1 no no FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQM FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQM A polypeptide(L) no no GTPPPPYTVG GTPPPPYTVG P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample YAP65 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pGAT2 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-12-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details Structure Of A Dystrophin Ww Domain Fragment In Complex With A -Dystroglycan Peptide Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex Prototype Ww Domain SHEET DETERMINATION METHOD: AUTHOR SEQUENCE THE WW DOMAIN BINDING PROTEIN-1 FRAGMENT WAS CHEMICALLY SYNTHESIZED. RCSB Y RCSB 2001-07-19 REL REL This peptide was chemically synthesized. The sequence of the peptide is naturally found in Homo sapiens (human). sample structures with the lowest energy 200 20 2D NOESY 2D TOCSY 2D NOESY 2D TOCSY 100mM NaCl 6 1 atm 288 K 100mM NaCl 6 1 atm 288 K 2000K, 200 runs, force constants for NOE 50 kcalmol-1rad-2, 590 restraints including 20 hydrogen bond restraints simulated annealing 1 lowest energy 1.2 mM WW domain; 2.4 mM peptide GTPPPPYTVG; 10mM potassium phosphate buffer pH6; 100mM NaCl; 0.1 mM DTT; 0.1 mM EDTA, 90% H20, 10% D20 1.2 mM WW domain; 2.4 mM peptide GTPPPPYTVG; 10mM potassium phosphate buffer pH6; 100mM NaCl; 0.1 mM DTT; 0.1 mM EDTA, 100%D20 BRUKER, A.G. processing XwinNMR 2.6 BRUKER, A.G. collection XwinNMR 2.6 Kraulis, P.J data analysis ANSIG 3.3 Brunger, A. refinement X-PLOR 3.1 600 Bruker DRX 750 Bruker DMX PHE 5 n 1 PHE 5 A GLU 6 n 2 GLU 6 A ILE 7 n 3 ILE 7 A PRO 8 n 4 PRO 8 A ASP 9 n 5 ASP 9 A ASP 10 n 6 ASP 10 A VAL 11 n 7 VAL 11 A PRO 12 n 8 PRO 12 A LEU 13 n 9 LEU 13 A PRO 14 n 10 PRO 14 A ALA 15 n 11 ALA 15 A GLY 16 n 12 GLY 16 A TRP 17 n 13 TRP 17 A GLU 18 n 14 GLU 18 A MET 19 n 15 MET 19 A ALA 20 n 16 ALA 20 A LYS 21 n 17 LYS 21 A THR 22 n 18 THR 22 A SER 23 n 19 SER 23 A SER 24 n 20 SER 24 A GLY 25 n 21 GLY 25 A GLN 26 n 22 GLN 26 A ARG 27 n 23 ARG 27 A TYR 28 n 24 TYR 28 A PHE 29 n 25 PHE 29 A LYS 30 n 26 LYS 30 A ASN 31 n 27 ASN 31 A HIS 32 n 28 HIS 32 A ILE 33 n 29 ILE 33 A ASP 34 n 30 ASP 34 A GLN 35 n 31 GLN 35 A THR 36 n 32 THR 36 A THR 37 n 33 THR 37 A THR 38 n 34 THR 38 A TRP 39 n 35 TRP 39 A GLN 40 n 36 GLN 40 A ASP 41 n 37 ASP 41 A PRO 42 n 38 PRO 42 A ARG 43 n 39 ARG 43 A LYS 44 n 40 LYS 44 A ALA 45 n 41 ALA 45 A MET 46 n 42 MET 46 A LEU 47 n 43 LEU 47 A SER 48 n 44 SER 48 A GLN 49 n 45 GLN 49 A MET 50 n 46 MET 50 A GLY 51 n 1 GLY 51 P THR 52 n 2 THR 52 P PRO 53 n 3 PRO 53 P PRO 54 n 4 PRO 54 P PRO 55 n 5 PRO 55 P PRO 56 n 6 PRO 56 P TYR 57 n 7 TYR 57 P THR 58 n 8 THR 58 P VAL 59 n 9 VAL 59 P GLY 60 n 10 GLY 60 P author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 20 A O ALA 16 A N TYR 28 A N TYR 24 A O LYS 30 A O LYS 26 A N THR 37 A N THR 33 6 A A O HE VAL ARG 11 43 1.59 8 A A OD1 H ASP ARG 41 43 1.59 9 A A H O ASN THR 31 36 1.60 1 A ILE 7 -108.54 77.91 1 A PRO 12 -71.02 -91.24 1 A THR 22 -93.91 -154.39 1 A SER 24 -122.34 -81.59 1 A GLN 26 -66.29 78.27 1 A ARG 27 -49.69 97.28 1 A GLN 35 57.79 82.77 1 A THR 36 -179.53 139.41 1 A GLN 40 -59.09 177.43 1 A LYS 44 -163.78 -39.35 1 A ALA 45 -111.87 52.80 1 A MET 46 -103.51 -160.00 1 A LEU 47 -68.75 69.61 1 A SER 48 -166.14 112.73 1 P TYR 57 58.09 163.34 1 P VAL 59 -174.99 67.32 2 A GLU 6 -171.35 -57.54 2 A ASP 9 -99.36 30.27 2 A LEU 13 62.20 134.35 2 A SER 23 175.25 -55.36 2 A SER 24 -170.53 -40.14 2 A ARG 27 -66.76 73.25 2 A GLN 35 56.26 77.48 2 A ARG 43 -177.40 -45.91 2 A SER 48 54.46 99.83 2 P THR 58 -160.41 -148.80 3 A PRO 8 -77.40 -169.88 3 A ASP 10 -165.61 -58.22 3 A LEU 13 59.10 147.18 3 A SER 23 58.18 -84.47 3 A SER 24 -125.09 -80.44 3 A ARG 27 -65.27 74.82 3 A GLN 35 54.37 79.10 3 A THR 36 -170.04 133.57 3 A GLN 40 -48.99 167.51 3 A ARG 43 179.70 -72.17 3 A ALA 45 -109.85 77.80 3 A MET 46 -159.41 -42.80 3 A LEU 47 -149.43 39.69 3 P THR 58 -113.05 -91.59 3 P VAL 59 -176.64 33.88 4 A ILE 7 53.53 96.83 4 A LEU 13 61.25 149.45 4 A GLU 18 -78.71 -165.96 4 A THR 22 -95.77 -152.81 4 A SER 24 -121.75 -82.06 4 A GLN 26 -66.68 79.73 4 A ARG 27 -47.19 101.85 4 A GLN 35 58.45 81.19 4 A THR 36 179.72 142.89 4 A LYS 44 -103.75 -60.79 4 A LEU 47 -156.16 80.55 4 A SER 48 53.24 91.09 4 P THR 58 -157.00 -149.81 5 A GLU 6 -109.97 71.31 5 A ASP 10 -149.19 -82.82 5 A PRO 12 -74.76 -161.97 5 A GLU 18 -79.73 -164.58 5 A SER 23 58.76 -83.47 5 A SER 24 -101.81 -77.52 5 A GLN 26 -54.15 94.88 5 A GLN 35 58.24 79.42 5 A THR 36 -176.62 143.86 5 A TRP 39 -72.20 -70.74 5 A PRO 42 -69.88 61.47 5 A ARG 43 -175.57 -67.06 5 A SER 48 -162.78 -64.76 5 P PRO 56 -70.91 -94.03 5 P VAL 59 -174.97 128.42 6 A PRO 8 -71.24 -165.79 6 A ASP 10 -52.93 -80.76 6 A PRO 12 -72.19 -92.65 6 A THR 22 -71.25 -153.01 6 A GLN 26 -63.07 83.21 6 A ARG 27 -59.05 85.91 6 A GLN 35 58.12 83.65 6 A GLN 40 -56.07 175.98 6 A ARG 43 -140.44 -40.61 6 A MET 46 -70.79 -80.43 6 P TYR 57 59.88 152.95 6 P THR 58 -149.38 -155.60 6 P VAL 59 -174.95 69.46 7 A GLU 6 60.79 119.80 7 A ILE 7 -117.54 67.41 7 A PRO 8 -72.19 -162.15 7 A ASP 10 46.58 75.17 7 A LEU 13 61.93 136.69 7 A SER 23 56.53 -85.51 7 A SER 24 -98.77 -76.71 7 A GLN 26 -54.94 93.63 7 A ARG 27 -64.00 96.83 7 A GLN 35 58.40 75.54 7 A ARG 43 -175.66 -80.77 7 A LEU 47 49.28 25.28 7 A SER 48 -174.18 112.66 7 P THR 58 -160.78 -149.25 8 A ILE 7 53.11 95.79 8 A LEU 13 63.15 131.50 8 A GLU 18 -77.88 -163.76 8 A SER 23 55.61 -86.23 8 A SER 24 -119.23 -80.36 8 A ARG 27 -63.03 71.01 8 A GLN 35 55.16 82.94 8 A THR 36 -172.77 137.87 8 A GLN 40 -48.47 169.07 8 A ARG 43 -102.15 -65.77 8 A LEU 47 -117.38 53.09 8 A SER 48 -102.18 70.64 9 A GLU 6 -173.98 125.08 9 A LEU 13 60.92 154.12 9 A GLU 18 -101.83 -163.88 9 A THR 22 -81.02 -150.57 9 A SER 24 178.21 34.82 9 A ARG 27 -62.35 81.32 9 A GLN 35 57.43 92.10 9 A GLN 40 -52.15 170.96 9 A ARG 43 -173.39 -76.85 9 A MET 46 54.81 -88.03 10 A GLU 6 -174.69 -53.70 10 A ASP 9 -92.90 48.07 10 A LEU 13 60.30 154.03 10 A GLU 18 -78.32 -162.62 10 A SER 24 -176.45 -47.32 10 A GLN 26 -61.73 82.53 10 A ARG 27 -64.01 76.53 10 A GLN 35 59.37 80.50 10 A LYS 44 -144.21 -73.23 10 A MET 46 -68.80 -158.79 10 A LEU 47 -64.76 79.68 10 P TYR 57 56.30 168.19 10 P THR 58 -157.50 -149.44 10 P VAL 59 -171.91 40.95 11 A GLU 6 -118.80 66.80 11 A PRO 8 -72.91 -159.67 11 A ASP 10 -167.80 -85.79 11 A GLU 18 -77.05 -165.21 11 A THR 22 -62.12 -150.09 11 A SER 24 -100.44 -79.17 11 A GLN 26 -62.89 85.87 11 A ARG 27 -50.84 97.62 11 A GLN 35 59.64 78.86 11 A THR 36 -175.36 134.44 11 A GLN 40 -52.16 170.38 11 A ARG 43 -76.72 -79.21 11 A LEU 47 48.71 25.41 11 A SER 48 -173.31 -47.66 11 A GLN 49 53.32 177.87 11 P THR 58 -157.39 -149.64 11 P VAL 59 -168.54 29.97 12 A LEU 13 57.80 170.59 12 A GLU 18 -119.62 -163.57 12 A THR 22 -94.40 -154.08 12 A SER 24 -118.79 -81.94 12 A ARG 27 -59.31 84.68 12 A GLN 35 57.60 82.29 12 A LYS 44 -151.60 -57.21 12 A ALA 45 -81.59 -80.87 12 A MET 46 55.21 -88.15 12 A SER 48 52.76 96.60 12 A GLN 49 -174.67 137.28 12 P VAL 59 39.05 38.42 13 A GLU 6 -128.79 -142.36 13 A ASP 10 -93.42 -67.98 13 A PRO 12 -71.16 -162.12 13 A ALA 15 56.93 -142.82 13 A GLU 18 -76.59 -167.99 13 A MET 19 -170.81 146.94 13 A SER 23 54.92 -87.93 13 A SER 24 -121.49 -80.72 13 A GLN 26 -68.73 72.05 13 A ARG 27 -50.56 93.24 13 A GLN 35 58.35 82.98 13 A THR 36 -173.46 134.46 13 A ARG 43 -96.43 -68.87 13 A ALA 45 -108.26 67.94 13 A GLN 49 53.21 70.24 13 P THR 58 -157.82 -148.04 14 A ILE 7 56.78 106.00 14 A PRO 8 -70.28 -168.11 14 A PRO 12 -71.33 -92.50 14 A SER 23 62.56 -75.91 14 A SER 24 -108.34 -79.31 14 A GLN 26 -53.94 95.04 14 A GLN 35 63.39 83.42 15 A PRO 8 -73.08 -162.95 15 A ASP 9 -146.80 -42.09 15 A LEU 13 61.74 151.30 15 A GLU 18 -108.01 -169.27 15 A THR 22 -82.85 -152.46 15 A SER 24 -117.02 -81.70 15 A GLN 26 -66.12 80.70 15 A ARG 27 -47.60 102.79 15 A GLN 35 57.35 87.89 15 A THR 36 -173.73 144.97 15 A TRP 39 -89.19 -72.32 15 A ARG 43 -88.66 -79.38 15 A MET 46 -133.54 -40.97 15 P PRO 56 -68.12 -177.58 15 P TYR 57 -130.08 -95.38 15 P THR 58 56.50 171.72 15 P VAL 59 -113.36 52.96 16 A ASP 9 -135.49 -40.75 16 A LEU 13 59.42 164.40 16 A THR 22 -61.31 -159.23 16 A SER 24 56.88 19.99 16 A GLN 26 -52.87 96.03 16 A GLN 35 60.43 77.79 16 A THR 36 -176.63 136.28 16 A ALA 45 -177.03 127.32 16 A MET 46 -168.13 -150.47 16 P THR 52 -51.52 107.82 16 P TYR 57 -50.00 157.93 16 P THR 58 -162.60 -148.90 17 A GLU 6 -175.33 63.64 17 A PRO 8 -70.62 -163.28 17 A PRO 12 -74.88 -75.41 17 A SER 23 55.88 -87.36 17 A SER 24 -122.18 -80.57 17 A GLN 26 -68.77 72.76 17 A ARG 27 -52.38 92.18 17 A ILE 33 -92.05 -61.17 17 A GLN 35 59.67 89.47 17 A THR 36 -178.04 -178.45 17 A GLN 40 -50.58 170.19 17 A ALA 45 -163.05 64.31 17 P THR 58 -164.12 -166.57 17 P VAL 59 -170.97 79.06 18 A PRO 8 -71.65 -89.63 18 A ASP 9 -151.72 18.87 18 A ASP 10 -64.42 -82.25 18 A SER 23 57.87 -84.90 18 A SER 24 -127.93 -80.28 18 A GLN 26 -69.33 79.87 18 A ARG 27 -65.61 72.04 18 A GLN 35 59.87 85.90 18 A GLN 40 -50.50 177.05 18 A LYS 44 -152.71 88.62 18 A ALA 45 -156.73 68.97 18 A MET 46 -165.16 -54.24 18 A SER 48 -74.40 -80.46 18 A GLN 49 -155.49 -41.61 18 P THR 52 -51.93 108.03 18 P PRO 56 -68.72 -161.65 18 P VAL 59 56.27 170.53 19 A GLU 6 -175.21 121.67 19 A LEU 13 61.49 146.63 19 A GLU 18 -78.38 -168.12 19 A THR 22 -96.15 30.71 19 A SER 23 174.77 -81.15 19 A SER 24 -120.62 -61.33 19 A GLN 26 -69.27 71.09 19 A ARG 27 -56.13 93.94 19 A GLN 35 56.83 85.15 19 A GLN 40 55.00 171.20 19 A ARG 43 -121.18 -58.13 19 A SER 48 -102.11 57.83 19 A GLN 49 55.13 -87.72 19 P TYR 57 60.26 151.93 19 P VAL 59 55.13 -89.47 20 A GLU 6 -176.81 97.06 20 A ASP 9 -106.72 59.82 20 A ASP 10 -135.16 -40.05 20 A LEU 13 58.52 159.18 20 A THR 22 -61.95 -153.18 20 A GLN 26 -67.19 78.54 20 A ARG 27 -48.59 97.67 20 A GLN 35 59.35 72.74 20 A TRP 39 -85.49 -70.08 20 A ARG 43 -175.13 -80.42 20 A ALA 45 -113.34 59.31 20 A GLN 49 53.18 -179.00 20 P THR 58 -166.18 -149.38 YAP65 (L30K mutant) WW domain in Complex with GTPPPPYTVG peptide 1 N N 2 N N STRUCTURAL PROTEIN WW domain, polyproline ligand, YAP65 mutant, STRUCTURAL PROTEIN YAP1_HUMAN UNP 1 165 P46937 FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRKAMLSQM AAD10950 GB 2 147 4205084 GTPPPPYTVA 165 210 1JMQ 5 50 P46937 A 1 1 46 147 156 1JMQ 51 60 4205084 P 2 1 10 1 LEU engineered mutation LYS 30 1JMQ A P46937 UNP 190 26 2 ALA SEE REMARK 999 GLY 60 1JMQ P 4205084 GB 156 10 3 anti-parallel anti-parallel A TRP 17 A TRP 13 A THR 22 A THR 18 A GLN 26 A GLN 22 A ASN 31 A ASN 27 A THR 36 A THR 32 A THR 38 A THR 34