0.021231
0.000000
0.000000
0.000000
0.011737
0.000000
0.000000
0.000000
0.008953
0.00000
0.00000
0.00000
Delarue, M.
Boule, J.B.
Lescar, J.
Expert-Bezancon, N.
Sukumar, N.
Jourdan, N.
Rougeon, F.
Papanicolaou, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
47.100
85.200
111.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
NA
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
N
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
21
427
439
10.1093/emboj/21.3.427
11823435
Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase.
2002
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
1662
1664
10.1107/S090744490001297X
Crystallization of the Catalytic Domain of Murine Deoxynucleotidyl Transferase
2000
10.2210/pdb1jms/pdb
pdb_00001jms
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
1999-04-25
MARRESEARCH
diamond
SINGLE WAVELENGTH
M
x-ray
1
0.940
1.0
ID14-3
ESRF
0.940
SYNCHROTRON
ESRF BEAMLINE ID14-3
short isoform
43602.648
TERMINAL DEOXYNUCLEOTIDYLTRANSFERASE
2.7.7.31
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
214
nat
water
TERMINAL ADDITION ENZYME
no
no
NSSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMK
DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQ
KAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFW
KQQGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLG
WTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
NSSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMK
DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQ
KAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFW
KQQGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLG
WTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
TDT
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21-DE3
plasmid
pET28(b)
1
2.55
50
VAPOR DIFFUSION, HANGING DROP
6.0
PEG 4000, LiCl 1M, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-01-23
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
human DNA polymerase beta (open form)
human DNA polymerase beta (closed form)
human DNA polymerase beta (open form)
kanamycin nucleotidyltransferase determined to 3.0-A resolution
kanamycin nucleotidyltransferase determined to 2.5-A resolution
RCSB
Y
RCSB
2001-07-19
REL
REL
MG
MAGNESIUM ION
NA
SODIUM ION
HOH
water
MG2
1
2
MG
MG
701
A
NA1
2
3
NA
NA
702
A
NA1
3
4
HOH
HOH
703
A
WAT
1
4
HOH
HOH
704
A
WAT
2
4
HOH
HOH
705
A
WAT
3
4
HOH
HOH
706
A
WAT
4
4
HOH
HOH
707
A
WAT
5
4
HOH
HOH
708
A
WAT
6
4
HOH
HOH
709
A
WAT
7
4
HOH
HOH
710
A
WAT
8
4
HOH
HOH
711
A
WAT
9
4
HOH
HOH
712
A
WAT
10
4
HOH
HOH
713
A
WAT
11
4
HOH
HOH
714
A
WAT
12
4
HOH
HOH
715
A
WAT
13
4
HOH
HOH
716
A
WAT
14
4
HOH
HOH
717
A
WAT
15
4
HOH
HOH
718
A
WAT
16
4
HOH
HOH
719
A
WAT
17
4
HOH
HOH
720
A
WAT
18
4
HOH
HOH
721
A
WAT
19
4
HOH
HOH
722
A
WAT
20
4
HOH
HOH
723
A
WAT
21
4
HOH
HOH
724
A
WAT
22
4
HOH
HOH
725
A
WAT
23
4
HOH
HOH
726
A
WAT
24
4
HOH
HOH
727
A
WAT
25
4
HOH
HOH
728
A
WAT
26
4
HOH
HOH
729
A
WAT
27
4
HOH
HOH
730
A
WAT
28
4
HOH
HOH
731
A
WAT
29
4
HOH
HOH
732
A
WAT
30
4
HOH
HOH
733
A
WAT
31
4
HOH
HOH
734
A
WAT
32
4
HOH
HOH
735
A
WAT
33
4
HOH
HOH
736
A
WAT
34
4
HOH
HOH
737
A
WAT
35
4
HOH
HOH
738
A
WAT
36
4
HOH
HOH
739
A
WAT
37
4
HOH
HOH
740
A
WAT
38
4
HOH
HOH
741
A
WAT
39
4
HOH
HOH
742
A
WAT
40
4
HOH
HOH
743
A
WAT
41
4
HOH
HOH
744
A
WAT
42
4
HOH
HOH
745
A
WAT
43
4
HOH
HOH
746
A
WAT
44
4
HOH
HOH
747
A
WAT
45
4
HOH
HOH
748
A
WAT
46
4
HOH
HOH
749
A
WAT
47
4
HOH
HOH
750
A
WAT
48
4
HOH
HOH
751
A
WAT
49
4
HOH
HOH
752
A
WAT
50
4
HOH
HOH
753
A
WAT
51
4
HOH
HOH
754
A
WAT
52
4
HOH
HOH
755
A
WAT
53
4
HOH
HOH
756
A
WAT
54
4
HOH
HOH
757
A
WAT
55
4
HOH
HOH
758
A
WAT
56
4
HOH
HOH
759
A
WAT
57
4
HOH
HOH
760
A
WAT
58
4
HOH
HOH
761
A
WAT
59
4
HOH
HOH
762
A
WAT
60
4
HOH
HOH
763
A
WAT
61
4
HOH
HOH
764
A
WAT
62
4
HOH
HOH
765
A
WAT
63
4
HOH
HOH
766
A
WAT
64
4
HOH
HOH
767
A
WAT
65
4
HOH
HOH
768
A
WAT
66
4
HOH
HOH
769
A
WAT
67
4
HOH
HOH
770
A
WAT
68
4
HOH
HOH
771
A
WAT
69
4
HOH
HOH
772
A
WAT
70
4
HOH
HOH
773
A
WAT
71
4
HOH
HOH
774
A
WAT
72
4
HOH
HOH
775
A
WAT
73
4
HOH
HOH
776
A
WAT
74
4
HOH
HOH
777
A
WAT
75
4
HOH
HOH
778
A
WAT
76
4
HOH
HOH
779
A
WAT
77
4
HOH
HOH
780
A
WAT
78
4
HOH
HOH
781
A
WAT
79
4
HOH
HOH
782
A
WAT
80
4
HOH
HOH
783
A
WAT
81
4
HOH
HOH
784
A
WAT
82
4
HOH
HOH
785
A
WAT
83
4
HOH
HOH
786
A
WAT
84
4
HOH
HOH
787
A
WAT
85
4
HOH
HOH
788
A
WAT
86
4
HOH
HOH
789
A
WAT
87
4
HOH
HOH
790
A
WAT
88
4
HOH
HOH
791
A
WAT
89
4
HOH
HOH
792
A
WAT
90
4
HOH
HOH
793
A
WAT
91
4
HOH
HOH
794
A
WAT
92
4
HOH
HOH
795
A
WAT
93
4
HOH
HOH
796
A
WAT
94
4
HOH
HOH
797
A
WAT
95
4
HOH
HOH
798
A
WAT
96
4
HOH
HOH
799
A
WAT
97
4
HOH
HOH
800
A
WAT
98
4
HOH
HOH
801
A
WAT
99
4
HOH
HOH
802
A
WAT
100
4
HOH
HOH
803
A
WAT
101
4
HOH
HOH
804
A
WAT
102
4
HOH
HOH
805
A
WAT
103
4
HOH
HOH
806
A
WAT
104
4
HOH
HOH
807
A
WAT
105
4
HOH
HOH
808
A
WAT
106
4
HOH
HOH
809
A
WAT
107
4
HOH
HOH
810
A
WAT
108
4
HOH
HOH
811
A
WAT
109
4
HOH
HOH
812
A
WAT
110
4
HOH
HOH
813
A
WAT
111
4
HOH
HOH
814
A
WAT
112
4
HOH
HOH
815
A
WAT
113
4
HOH
HOH
816
A
WAT
114
4
HOH
HOH
817
A
WAT
115
4
HOH
HOH
818
A
WAT
116
4
HOH
HOH
819
A
WAT
117
4
HOH
HOH
820
A
WAT
118
4
HOH
HOH
821
A
WAT
119
4
HOH
HOH
822
A
WAT
120
4
HOH
HOH
823
A
WAT
121
4
HOH
HOH
824
A
WAT
122
4
HOH
HOH
825
A
WAT
123
4
HOH
HOH
826
A
WAT
124
4
HOH
HOH
827
A
WAT
125
4
HOH
HOH
828
A
WAT
126
4
HOH
HOH
829
A
WAT
127
4
HOH
HOH
830
A
WAT
128
4
HOH
HOH
831
A
WAT
129
4
HOH
HOH
832
A
WAT
130
4
HOH
HOH
833
A
WAT
131
4
HOH
HOH
834
A
WAT
132
4
HOH
HOH
835
A
WAT
133
4
HOH
HOH
836
A
WAT
134
4
HOH
HOH
837
A
WAT
135
4
HOH
HOH
838
A
WAT
136
4
HOH
HOH
839
A
WAT
137
4
HOH
HOH
840
A
WAT
138
4
HOH
HOH
841
A
WAT
139
4
HOH
HOH
842
A
WAT
140
4
HOH
HOH
843
A
WAT
141
4
HOH
HOH
844
A
WAT
142
4
HOH
HOH
845
A
WAT
143
4
HOH
HOH
846
A
WAT
144
4
HOH
HOH
847
A
WAT
145
4
HOH
HOH
848
A
WAT
146
4
HOH
HOH
849
A
WAT
147
4
HOH
HOH
850
A
WAT
148
4
HOH
HOH
851
A
WAT
149
4
HOH
HOH
852
A
WAT
150
4
HOH
HOH
853
A
WAT
151
4
HOH
HOH
854
A
WAT
152
4
HOH
HOH
855
A
WAT
153
4
HOH
HOH
856
A
WAT
154
4
HOH
HOH
857
A
WAT
155
4
HOH
HOH
858
A
WAT
156
4
HOH
HOH
859
A
WAT
157
4
HOH
HOH
860
A
WAT
158
4
HOH
HOH
861
A
WAT
159
4
HOH
HOH
862
A
WAT
160
4
HOH
HOH
863
A
WAT
161
4
HOH
HOH
864
A
WAT
162
4
HOH
HOH
865
A
WAT
163
4
HOH
HOH
866
A
WAT
164
4
HOH
HOH
867
A
WAT
165
4
HOH
HOH
868
A
WAT
166
4
HOH
HOH
869
A
WAT
167
4
HOH
HOH
870
A
WAT
168
4
HOH
HOH
871
A
WAT
169
4
HOH
HOH
872
A
WAT
170
4
HOH
HOH
873
A
WAT
171
4
HOH
HOH
874
A
WAT
172
4
HOH
HOH
875
A
WAT
173
4
HOH
HOH
876
A
WAT
174
4
HOH
HOH
877
A
WAT
175
4
HOH
HOH
878
A
WAT
176
4
HOH
HOH
879
A
WAT
177
4
HOH
HOH
880
A
WAT
178
4
HOH
HOH
881
A
WAT
179
4
HOH
HOH
882
A
WAT
180
4
HOH
HOH
883
A
WAT
181
4
HOH
HOH
884
A
WAT
182
4
HOH
HOH
885
A
WAT
183
4
HOH
HOH
886
A
WAT
184
4
HOH
HOH
887
A
WAT
185
4
HOH
HOH
888
A
WAT
186
4
HOH
HOH
889
A
WAT
187
4
HOH
HOH
890
A
WAT
188
4
HOH
HOH
891
A
WAT
189
4
HOH
HOH
892
A
WAT
190
4
HOH
HOH
893
A
WAT
191
4
HOH
HOH
894
A
WAT
192
4
HOH
HOH
895
A
WAT
193
4
HOH
HOH
896
A
WAT
194
4
HOH
HOH
897
A
WAT
195
4
HOH
HOH
898
A
WAT
196
4
HOH
HOH
899
A
WAT
197
4
HOH
HOH
900
A
WAT
198
4
HOH
HOH
901
A
WAT
199
4
HOH
HOH
902
A
WAT
200
4
HOH
HOH
903
A
WAT
201
4
HOH
HOH
904
A
WAT
202
4
HOH
HOH
905
A
WAT
203
4
HOH
HOH
906
A
WAT
204
4
HOH
HOH
907
A
WAT
205
4
HOH
HOH
908
A
WAT
206
4
HOH
HOH
909
A
WAT
207
4
HOH
HOH
910
A
WAT
208
4
HOH
HOH
911
A
WAT
209
4
HOH
HOH
912
A
WAT
210
4
HOH
HOH
913
A
WAT
211
4
HOH
HOH
914
A
WAT
212
4
HOH
HOH
915
A
WAT
213
4
HOH
HOH
916
A
n
1
130
A
n
2
131
A
n
3
132
A
n
4
133
A
n
5
134
A
n
6
135
A
n
7
136
A
n
8
137
A
n
9
138
A
n
10
139
A
n
11
140
A
n
12
141
A
n
13
142
A
n
14
143
A
n
15
144
A
n
16
145
A
n
17
146
A
n
18
147
A
ALA
148
n
19
LYS
148
A
ALA
149
n
20
LYS
149
A
ILE
150
n
21
ILE
150
A
SER
151
n
22
SER
151
A
GLN
152
n
23
GLN
152
A
TYR
153
n
24
TYR
153
A
ALA
154
n
25
ALA
154
A
CYS
155
n
26
CYS
155
A
GLN
156
n
27
GLN
156
A
ARG
157
n
28
ARG
157
A
ARG
158
n
29
ARG
158
A
THR
159
n
30
THR
159
A
THR
160
n
31
THR
160
A
LEU
161
n
32
LEU
161
A
ASN
162
n
33
ASN
162
A
ASN
163
n
34
ASN
163
A
TYR
164
n
35
TYR
164
A
ASN
165
n
36
ASN
165
A
GLN
166
n
37
GLN
166
A
LEU
167
n
38
LEU
167
A
PHE
168
n
39
PHE
168
A
THR
169
n
40
THR
169
A
ASP
170
n
41
ASP
170
A
ALA
171
n
42
ALA
171
A
LEU
172
n
43
LEU
172
A
ASP
173
n
44
ASP
173
A
ILE
174
n
45
ILE
174
A
LEU
175
n
46
LEU
175
A
ALA
176
n
47
ALA
176
A
GLU
177
n
48
GLU
177
A
ASN
178
n
49
ASN
178
A
ASP
179
n
50
ASP
179
A
GLU
180
n
51
GLU
180
A
LEU
181
n
52
LEU
181
A
ARG
182
n
53
ARG
182
A
GLU
183
n
54
GLU
183
A
ASN
184
n
55
ASN
184
A
GLU
185
n
56
GLU
185
A
GLY
186
n
57
GLY
186
A
SER
187
n
58
SER
187
A
CYS
188
n
59
CYS
188
A
LEU
189
n
60
LEU
189
A
ALA
190
n
61
ALA
190
A
PHE
191
n
62
PHE
191
A
MET
192
n
63
MET
192
A
ARG
193
n
64
ARG
193
A
ALA
194
n
65
ALA
194
A
SER
195
n
66
SER
195
A
SER
196
n
67
SER
196
A
VAL
197
n
68
VAL
197
A
LEU
198
n
69
LEU
198
A
LYS
199
n
70
LYS
199
A
SER
200
n
71
SER
200
A
LEU
201
n
72
LEU
201
A
PRO
202
n
73
PRO
202
A
PHE
203
n
74
PHE
203
A
PRO
204
n
75
PRO
204
A
ILE
205
n
76
ILE
205
A
THR
206
n
77
THR
206
A
SER
207
n
78
SER
207
A
MET
208
n
79
MET
208
A
LYS
209
n
80
LYS
209
A
ASP
210
n
81
ASP
210
A
THR
211
n
82
THR
211
A
GLU
212
n
83
GLU
212
A
GLY
213
n
84
GLY
213
A
ILE
214
n
85
ILE
214
A
PRO
215
n
86
PRO
215
A
CYS
216
n
87
CYS
216
A
LEU
217
n
88
LEU
217
A
GLY
218
n
89
GLY
218
A
ASP
219
n
90
ASP
219
A
LYS
220
n
91
LYS
220
A
VAL
221
n
92
VAL
221
A
LYS
222
n
93
LYS
222
A
SER
223
n
94
SER
223
A
ILE
224
n
95
ILE
224
A
ILE
225
n
96
ILE
225
A
GLU
226
n
97
GLU
226
A
GLY
227
n
98
GLY
227
A
ILE
228
n
99
ILE
228
A
ILE
229
n
100
ILE
229
A
GLU
230
n
101
GLU
230
A
ASP
231
n
102
ASP
231
A
GLY
232
n
103
GLY
232
A
GLU
233
n
104
GLU
233
A
SER
234
n
105
SER
234
A
SER
235
n
106
SER
235
A
GLU
236
n
107
GLU
236
A
ALA
237
n
108
ALA
237
A
LYS
238
n
109
LYS
238
A
ALA
239
n
110
ALA
239
A
VAL
240
n
111
VAL
240
A
LEU
241
n
112
LEU
241
A
ASN
242
n
113
ASN
242
A
ASP
243
n
114
ASP
243
A
GLU
244
n
115
GLU
244
A
ARG
245
n
116
ARG
245
A
TYR
246
n
117
TYR
246
A
LYS
247
n
118
LYS
247
A
SER
248
n
119
SER
248
A
PHE
249
n
120
PHE
249
A
LYS
250
n
121
LYS
250
A
LEU
251
n
122
LEU
251
A
PHE
252
n
123
PHE
252
A
THR
253
n
124
THR
253
A
SER
254
n
125
SER
254
A
VAL
255
n
126
VAL
255
A
PHE
256
n
127
PHE
256
A
GLY
257
n
128
GLY
257
A
VAL
258
n
129
VAL
258
A
GLY
259
n
130
GLY
259
A
LEU
260
n
131
LEU
260
A
LYS
261
n
132
LYS
261
A
THR
262
n
133
THR
262
A
ALA
263
n
134
ALA
263
A
GLU
264
n
135
GLU
264
A
LYS
265
n
136
LYS
265
A
TRP
266
n
137
TRP
266
A
PHE
267
n
138
PHE
267
A
ARG
268
n
139
ARG
268
A
MET
269
n
140
MET
269
A
GLY
270
n
141
GLY
270
A
PHE
271
n
142
PHE
271
A
ARG
272
n
143
ARG
272
A
THR
273
n
144
THR
273
A
LEU
274
n
145
LEU
274
A
SER
275
n
146
SER
275
A
LYS
276
n
147
LYS
276
A
ILE
277
n
148
ILE
277
A
GLN
278
n
149
GLN
278
A
SER
279
n
150
SER
279
A
ASP
280
n
151
ASP
280
A
LYS
281
n
152
LYS
281
A
SER
282
n
153
SER
282
A
LEU
283
n
154
LEU
283
A
ARG
284
n
155
ARG
284
A
PHE
285
n
156
PHE
285
A
THR
286
n
157
THR
286
A
GLN
287
n
158
GLN
287
A
MET
288
n
159
MET
288
A
GLN
289
n
160
GLN
289
A
LYS
290
n
161
LYS
290
A
ALA
291
n
162
ALA
291
A
GLY
292
n
163
GLY
292
A
PHE
293
n
164
PHE
293
A
LEU
294
n
165
LEU
294
A
TYR
295
n
166
TYR
295
A
TYR
296
n
167
TYR
296
A
GLU
297
n
168
GLU
297
A
ASP
298
n
169
ASP
298
A
LEU
299
n
170
LEU
299
A
VAL
300
n
171
VAL
300
A
SER
301
n
172
SER
301
A
CYS
302
n
173
CYS
302
A
VAL
303
n
174
VAL
303
A
ASN
304
n
175
ASN
304
A
ARG
305
n
176
ARG
305
A
PRO
306
n
177
PRO
306
A
GLU
307
n
178
GLU
307
A
ALA
308
n
179
ALA
308
A
GLU
309
n
180
GLU
309
A
ALA
310
n
181
ALA
310
A
VAL
311
n
182
VAL
311
A
SER
312
n
183
SER
312
A
MET
313
n
184
MET
313
A
LEU
314
n
185
LEU
314
A
VAL
315
n
186
VAL
315
A
LYS
316
n
187
LYS
316
A
GLU
317
n
188
GLU
317
A
ALA
318
n
189
ALA
318
A
VAL
319
n
190
VAL
319
A
VAL
320
n
191
VAL
320
A
THR
321
n
192
THR
321
A
PHE
322
n
193
PHE
322
A
LEU
323
n
194
LEU
323
A
PRO
324
n
195
PRO
324
A
ASP
325
n
196
ASP
325
A
ALA
326
n
197
ALA
326
A
LEU
327
n
198
LEU
327
A
VAL
328
n
199
VAL
328
A
THR
329
n
200
THR
329
A
MET
330
n
201
MET
330
A
THR
331
n
202
THR
331
A
GLY
332
n
203
GLY
332
A
GLY
333
n
204
GLY
333
A
PHE
334
n
205
PHE
334
A
ARG
335
n
206
ARG
335
A
ARG
336
n
207
ARG
336
A
GLY
337
n
208
GLY
337
A
LYS
338
n
209
LYS
338
A
MET
339
n
210
MET
339
A
THR
340
n
211
THR
340
A
GLY
341
n
212
GLY
341
A
HIS
342
n
213
HIS
342
A
ASP
343
n
214
ASP
343
A
VAL
344
n
215
VAL
344
A
ASP
345
n
216
ASP
345
A
PHE
346
n
217
PHE
346
A
LEU
347
n
218
LEU
347
A
ILE
348
n
219
ILE
348
A
THR
349
n
220
THR
349
A
SER
350
n
221
SER
350
A
PRO
351
n
222
PRO
351
A
GLU
352
n
223
GLU
352
A
ALA
353
n
224
ALA
353
A
THR
354
n
225
THR
354
A
GLU
355
n
226
GLU
355
A
ASP
356
n
227
ASP
356
A
GLU
357
n
228
GLU
357
A
GLU
358
n
229
GLU
358
A
GLN
359
n
230
GLN
359
A
GLN
360
n
231
GLN
360
A
LEU
361
n
232
LEU
361
A
LEU
362
n
233
LEU
362
A
HIS
363
n
234
HIS
363
A
LYS
364
n
235
LYS
364
A
VAL
365
n
236
VAL
365
A
THR
366
n
237
THR
366
A
ASP
367
n
238
ASP
367
A
PHE
368
n
239
PHE
368
A
TRP
369
n
240
TRP
369
A
LYS
370
n
241
LYS
370
A
GLN
371
n
242
GLN
371
A
GLN
372
n
243
GLN
372
A
GLY
373
n
244
GLY
373
A
LEU
374
n
245
LEU
374
A
LEU
375
n
246
LEU
375
A
LEU
376
n
247
LEU
376
A
TYR
377
n
248
TYR
377
A
CYS
378
n
249
CYS
378
A
ASP
379
n
250
ASP
379
A
ILE
380
n
251
ILE
380
A
LEU
381
n
252
LEU
381
A
GLU
382
n
253
GLU
382
A
SER
383
n
254
SER
383
A
THR
384
n
255
THR
384
A
PHE
385
n
256
PHE
385
A
GLU
386
n
257
GLU
386
A
LYS
387
n
258
LYS
387
A
PHE
388
n
259
PHE
388
A
LYS
389
n
260
LYS
389
A
GLN
390
n
261
GLN
390
A
PRO
391
n
262
PRO
391
A
SER
392
n
263
SER
392
A
ARG
393
n
264
ARG
393
A
LYS
394
n
265
LYS
394
A
VAL
395
n
266
VAL
395
A
ASP
396
n
267
ASP
396
A
ALA
397
n
268
ALA
397
A
LEU
398
n
269
LEU
398
A
ASP
399
n
270
ASP
399
A
HIS
400
n
271
HIS
400
A
PHE
401
n
272
PHE
401
A
GLN
402
n
273
GLN
402
A
LYS
403
n
274
LYS
403
A
CYS
404
n
275
CYS
404
A
PHE
405
n
276
PHE
405
A
LEU
406
n
277
LEU
406
A
ILE
407
n
278
ILE
407
A
LEU
408
n
279
LEU
408
A
LYS
409
n
280
LYS
409
A
LEU
410
n
281
LEU
410
A
ASP
411
n
282
ASP
411
A
HIS
412
n
283
HIS
412
A
GLY
413
n
284
GLY
413
A
ARG
414
n
285
ARG
414
A
VAL
415
n
286
VAL
415
A
HIS
416
n
287
HIS
416
A
SER
417
n
288
SER
417
A
GLU
418
n
289
GLU
418
A
LYS
419
n
290
LYS
419
A
SER
420
n
291
SER
420
A
n
292
421
A
n
293
422
A
n
294
423
A
ALA
424
n
295
GLU
424
A
GLY
425
n
296
GLY
425
A
LYS
426
n
297
LYS
426
A
GLY
427
n
298
GLY
427
A
TRP
428
n
299
TRP
428
A
LYS
429
n
300
LYS
429
A
ALA
430
n
301
ALA
430
A
ILE
431
n
302
ILE
431
A
ARG
432
n
303
ARG
432
A
VAL
433
n
304
VAL
433
A
ASP
434
n
305
ASP
434
A
LEU
435
n
306
LEU
435
A
VAL
436
n
307
VAL
436
A
MET
437
n
308
MET
437
A
CYS
438
n
309
CYS
438
A
PRO
439
n
310
PRO
439
A
TYR
440
n
311
TYR
440
A
ASP
441
n
312
ASP
441
A
ARG
442
n
313
ARG
442
A
ARG
443
n
314
ARG
443
A
ALA
444
n
315
ALA
444
A
PHE
445
n
316
PHE
445
A
ALA
446
n
317
ALA
446
A
LEU
447
n
318
LEU
447
A
LEU
448
n
319
LEU
448
A
GLY
449
n
320
GLY
449
A
TRP
450
n
321
TRP
450
A
THR
451
n
322
THR
451
A
GLY
452
n
323
GLY
452
A
SER
453
n
324
SER
453
A
ARG
454
n
325
ARG
454
A
GLN
455
n
326
GLN
455
A
PHE
456
n
327
PHE
456
A
GLU
457
n
328
GLU
457
A
ARG
458
n
329
ARG
458
A
ASP
459
n
330
ASP
459
A
LEU
460
n
331
LEU
460
A
ARG
461
n
332
ARG
461
A
ARG
462
n
333
ARG
462
A
TYR
463
n
334
TYR
463
A
ALA
464
n
335
ALA
464
A
THR
465
n
336
THR
465
A
HIS
466
n
337
HIS
466
A
GLU
467
n
338
GLU
467
A
ARG
468
n
339
ARG
468
A
LYS
469
n
340
LYS
469
A
MET
470
n
341
MET
470
A
MET
471
n
342
MET
471
A
LEU
472
n
343
LEU
472
A
ASP
473
n
344
ASP
473
A
ASN
474
n
345
ASN
474
A
HIS
475
n
346
HIS
475
A
ALA
476
n
347
ALA
476
A
LEU
477
n
348
LEU
477
A
TYR
478
n
349
TYR
478
A
ASP
479
n
350
ASP
479
A
ARG
480
n
351
ARG
480
A
THR
481
n
352
THR
481
A
LYS
482
n
353
LYS
482
A
ARG
483
n
354
ARG
483
A
VAL
484
n
355
VAL
484
A
PHE
485
n
356
PHE
485
A
LEU
486
n
357
LEU
486
A
GLU
487
n
358
GLU
487
A
ALA
488
n
359
ALA
488
A
GLU
489
n
360
GLU
489
A
SER
490
n
361
SER
490
A
GLU
491
n
362
GLU
491
A
GLU
492
n
363
GLU
492
A
GLU
493
n
364
GLU
493
A
ILE
494
n
365
ILE
494
A
PHE
495
n
366
PHE
495
A
ALA
496
n
367
ALA
496
A
HIS
497
n
368
HIS
497
A
LEU
498
n
369
LEU
498
A
GLY
499
n
370
GLY
499
A
LEU
500
n
371
LEU
500
A
ASP
501
n
372
ASP
501
A
TYR
502
n
373
TYR
502
A
ILE
503
n
374
ILE
503
A
GLU
504
n
375
GLU
504
A
PRO
505
n
376
PRO
505
A
TRP
506
n
377
TRP
506
A
GLU
507
n
378
GLU
507
A
ARG
508
n
379
ARG
508
A
ASN
509
n
380
ASN
509
A
ALA
510
n
381
ALA
510
A
author_defined_assembly
1
monomeric
A
THR
253
A
O
THR
124
1_555
A
NA
702
C
NA
NA
1_555
A
VAL
255
A
O
VAL
126
1_555
85.7
A
THR
253
A
O
THR
124
1_555
A
NA
702
C
NA
NA
1_555
A
HOH
802
D
O
HOH
1_555
168.8
A
VAL
255
A
O
VAL
126
1_555
A
NA
702
C
NA
NA
1_555
A
HOH
802
D
O
HOH
1_555
90.4
A
ASP
343
A
OD2
ASP
214
1_555
A
MG
701
B
MG
MG
1_555
A
ASP
345
A
OD2
ASP
216
1_555
85.5
A
ASP
343
A
OD2
ASP
214
1_555
A
MG
701
B
MG
MG
1_555
A
ASP
345
A
OD1
ASP
216
1_555
63.1
A
ASP
345
A
OD2
ASP
216
1_555
A
MG
701
B
MG
MG
1_555
A
ASP
345
A
OD1
ASP
216
1_555
45.9
A
ASP
343
A
OD2
ASP
214
1_555
A
MG
701
B
MG
MG
1_555
A
ASP
434
A
OD2
ASP
305
1_555
89.1
A
ASP
345
A
OD2
ASP
216
1_555
A
MG
701
B
MG
MG
1_555
A
ASP
434
A
OD2
ASP
305
1_555
130.1
A
ASP
345
A
OD1
ASP
216
1_555
A
MG
701
B
MG
MG
1_555
A
ASP
434
A
OD2
ASP
305
1_555
88.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
329
A
O
THR
200
A
N
LEU
347
A
N
LEU
218
A
N
VAL
344
A
N
VAL
215
A
O
ARG
432
A
O
ARG
303
A
N
MET
437
A
N
MET
308
A
O
GLN
402
A
O
GLN
273
A
O
ILE
407
A
O
ILE
278
A
N
LEU
376
A
N
LEU
247
A
O
MET
471
A
O
MET
342
A
N
TYR
478
A
N
TYR
349
A
N
ASP
479
A
N
ASP
350
A
O
VAL
484
A
O
VAL
355
1
A
CG
LYS
148
A
CG
LYS
19
1
Y
1
A
CD
LYS
148
A
CD
LYS
19
1
Y
1
A
CE
LYS
148
A
CE
LYS
19
1
Y
1
A
NZ
LYS
148
A
NZ
LYS
19
1
Y
1
A
CG
LYS
149
A
CG
LYS
20
1
Y
1
A
CD
LYS
149
A
CD
LYS
20
1
Y
1
A
CE
LYS
149
A
CE
LYS
20
1
Y
1
A
NZ
LYS
149
A
NZ
LYS
20
1
Y
1
A
CG
GLU
424
A
CG
GLU
295
1
Y
1
A
CD
GLU
424
A
CD
GLU
295
1
Y
1
A
OE1
GLU
424
A
OE1
GLU
295
1
Y
1
A
OE2
GLU
424
A
OE2
GLU
295
1
Y
1
A
ASN
130
A
ASN
1
1
Y
1
A
SER
131
A
SER
2
1
Y
1
A
SER
132
A
SER
3
1
Y
1
A
PRO
133
A
PRO
4
1
Y
1
A
SER
134
A
SER
5
1
Y
1
A
PRO
135
A
PRO
6
1
Y
1
A
VAL
136
A
VAL
7
1
Y
1
A
PRO
137
A
PRO
8
1
Y
1
A
GLY
138
A
GLY
9
1
Y
1
A
SER
139
A
SER
10
1
Y
1
A
GLN
140
A
GLN
11
1
Y
1
A
ASN
141
A
ASN
12
1
Y
1
A
VAL
142
A
VAL
13
1
Y
1
A
PRO
143
A
PRO
14
1
Y
1
A
ALA
144
A
ALA
15
1
Y
1
A
PRO
145
A
PRO
16
1
Y
1
A
ALA
146
A
ALA
17
1
Y
1
A
VAL
147
A
VAL
18
1
Y
1
A
GLY
421
A
GLY
292
1
Y
1
A
GLN
422
A
GLN
293
1
Y
1
A
GLN
423
A
GLN
294
1
Y
1
A
ASN
184
-100.05
76.52
1
A
GLU
185
-37.52
-71.85
1
A
GLU
230
-73.64
-91.04
1
A
LEU
323
-153.42
79.09
1
A
THR
331
-117.93
-151.95
1
A
ARG
393
-70.09
34.94
1
A
LYS
426
61.70
89.39
protein_rep.param
protein.top
cis_peptide.param
water_rep.param
water.top
ion.param
ion.top
39.2
7.696
0
0
6.953
0
-14.649
0.2590000
0.2140000
0.2180000
0.2180000
2.36
18.0
968
18766
18766
5.0
99.8
random
1000
1
yes
THROUGHOUT
0.0
MIR
MLF
FLAT MODEL
38.91
0.3511
2.36
18.0
214
3125
2
0
2909
0.006
1.092
1.433
1.5
2.240
2.0
2.355
2.0
3.414
2.5
0.3800000
0.3178000
2.40
45
841
19
5.0
98.4
46.3
2.35
25.0
1JMS
19351
19351
0.0
0.0
0.0590000
0.0590000
1
25.3
5.2
99.8
0.3400000
2.35
2.40
4.1
0.3400000
4.1
98.4
phasing
MLPHARE
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of the Catalytic Core of Murine Terminal Deoxynucleotidyl Transferase
1
N
N
2
N
N
3
N
N
4
N
N
A
TYR
153
A
TYR
24
HELX_P
A
ARG
157
A
ARG
28
5
1
5
A
ASN
165
A
ASN
36
HELX_P
A
ARG
182
A
ARG
53
1
2
18
A
ASN
184
A
ASN
55
HELX_P
A
SER
200
A
SER
71
1
3
17
A
SER
207
A
SER
78
HELX_P
A
GLU
212
A
GLU
83
5
4
6
A
GLY
218
A
GLY
89
HELX_P
A
GLY
232
A
GLY
103
1
5
15
A
SER
234
A
SER
105
HELX_P
A
ASP
243
A
ASP
114
1
6
10
A
ASP
243
A
ASP
114
HELX_P
A
SER
254
A
SER
125
1
7
12
A
GLY
259
A
GLY
130
HELX_P
A
MET
269
A
MET
140
1
8
11
A
THR
273
A
THR
144
HELX_P
A
ASP
280
A
ASP
151
1
9
8
A
THR
286
A
THR
157
HELX_P
A
TYR
295
A
TYR
166
1
10
10
A
TYR
295
A
TYR
166
HELX_P
A
SER
301
A
SER
172
1
11
7
A
ASN
304
A
ASN
175
HELX_P
A
LEU
323
A
LEU
194
1
12
20
A
THR
331
A
THR
202
HELX_P
A
ARG
336
A
ARG
207
1
13
6
A
THR
354
A
THR
225
HELX_P
A
GLN
372
A
GLN
243
1
14
19
A
GLY
413
A
GLY
284
HELX_P
A
VAL
415
A
VAL
286
5
15
3
A
PRO
439
A
PRO
310
HELX_P
A
ASP
441
A
ASP
312
5
16
3
A
ARG
442
A
ARG
313
HELX_P
A
GLY
452
A
GLY
323
1
17
11
A
SER
453
A
SER
324
HELX_P
A
LYS
469
A
LYS
340
1
18
17
A
SER
490
A
SER
361
HELX_P
A
GLY
499
A
GLY
370
1
19
10
A
GLU
504
A
GLU
375
HELX_P
A
GLU
507
A
GLU
378
5
20
4
metalc
2.524
A
THR
253
A
O
THR
124
1_555
A
NA
702
C
NA
NA
1_555
metalc
2.817
A
VAL
255
A
O
VAL
126
1_555
A
NA
702
C
NA
NA
1_555
metalc
2.571
A
ASP
343
A
OD2
ASP
214
1_555
A
MG
701
B
MG
MG
1_555
metalc
3.000
A
ASP
345
A
OD2
ASP
216
1_555
A
MG
701
B
MG
MG
1_555
metalc
2.559
A
ASP
345
A
OD1
ASP
216
1_555
A
MG
701
B
MG
MG
1_555
metalc
2.345
A
ASP
434
A
OD2
ASP
305
1_555
A
MG
701
B
MG
MG
1_555
metalc
2.832
A
NA
702
C
NA
NA
1_555
A
HOH
802
D
O
HOH
1_555
TRANSFERASE
polymerase, nucleotidyl transferase, TRANSFERASE
A
GLY
452
A
GLY
323
1
A
SER
453
A
SER
324
-0.81
TDT_MOUSE
UNP
1
130
P09838
NSSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMK
DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQ
KAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFW
KQQGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLG
WTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
130
510
1JMS
130
510
P09838
A
1
1
381
5
3
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
327
A
LEU
198
A
MET
330
A
MET
201
A
VAL
344
A
VAL
215
A
THR
349
A
THR
220
A
TRP
428
A
TRP
299
A
MET
437
A
MET
308
A
GLN
402
A
GLN
273
A
ASP
411
A
ASP
282
A
LEU
375
A
LEU
246
A
LEU
381
A
LEU
252
A
MET
470
A
MET
341
A
LEU
472
A
LEU
343
A
LEU
477
A
LEU
348
A
ASP
479
A
ASP
350
A
VAL
484
A
VAL
355
A
PHE
485
A
PHE
356
BINDING SITE FOR RESIDUE MG A 701
A
MG
701
Software
3
BINDING SITE FOR RESIDUE NA A 702
A
NA
702
Software
4
A
ASP
343
A
ASP
214
3
1_555
A
ASP
345
A
ASP
216
3
1_555
A
ASP
434
A
ASP
305
3
1_555
A
THR
253
A
THR
124
4
1_555
A
VAL
255
A
VAL
126
4
1_555
A
VAL
258
A
VAL
129
4
1_555
A
HOH
802
D
HOH
4
1_555
19
P 21 21 21