1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wang, J. Truckses, D.M. Abildgaard, F. Dzakula, Z. Zolnai, Z. Markley, J.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE J.Biomol.NMR JBNME9 0800 0925-2738 10 143 164 10.1023/A:1018350004729 9369015 Solution structures of staphylococcal nuclease from multidimensional, multinuclear NMR: nuclease-H124L and its ternary complex with Ca2+ and thymidine-3',5'-bisphosphate. 1997 10.2210/pdb1joo/pdb pdb_00001joo 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 16818.340 staphylococcal nuclease 3.1.31.1 nuclease A H124L 1 man polymer thermonuclease, tnase, micrococcal nuclease no no ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Staphylococcus Escherichia Escherichia coli sample 1280 Staphylococcus aureus 469008 Escherichia coli BL21(DE3) BL-21(DE3) plasmid pTSN2cc database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-08-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details AVERAGED STRUCTURE FOR STAPHYLOCOCCAL NUCLEASE-H124L IN TERNARY COMPLEX WITH CA2+ AND THYMIDINE-3',5'-BISPHOSPHATE Ensemble structures for Staphylococcal nuclease-H124L in ternary complex with Ca2+ and thymidine-3',5'-bisphosphate Ensemble structures for unligated Staphylococcal nuclease-H124L RCSB Y RCSB 2001-07-30 REL REL 1 E-COSY HMQC-J DQF-COSY 2D NOESY 2D NOESY 3D 1H-15N NOESY-HMQC 2D 1H-13C HMQC HNCO 3D HNCA and others 300 nM KCl 5.5 ambient 318 K 300 nM KCl 5.1 ambient 318 K 2176 constraints were used to calculate the structure Distance, hydrogen bond and torsion angle constraints minimized average structure 3.5-5 mM Nuclease-H124L U-50% 2H; 300 mM KCl; D2O D2O 3.5-5 mM Nuclease-H124L U-95% 15N; 300 mM KCl; H2O H2O 3.5-5 mM Nuclease-H124L; 300 mM KCl; D2O D2O 3.5-5 mM Nuclease-H124L U-50% 2H; 300 mM KCl; H2O H2O 3.5-5 mM Nuclease-H124L U-98% 13C; 300 mM KCl; H2O H2O 3.5-5 mM Nuclease-H124L U-98% 13C U-99% 15N; 300 mM KCl; H2O H2O Biosym Technologies Inc processing Felix Brunger structure solution X-PLOR 3.1 Biosym Technologies Inc structure solution Insight II 2.3 McDonald and Thornton structure solution HBPLUS Brunger refinement X-PLOR 3.1 500 Bruker AM 600 Bruker AM ALA 1 n 1 ALA 1 A THR 2 n 2 THR 2 A SER 3 n 3 SER 3 A THR 4 n 4 THR 4 A LYS 5 n 5 LYS 5 A LYS 6 n 6 LYS 6 A LEU 7 n 7 LEU 7 A HIS 8 n 8 HIS 8 A LYS 9 n 9 LYS 9 A GLU 10 n 10 GLU 10 A PRO 11 n 11 PRO 11 A ALA 12 n 12 ALA 12 A THR 13 n 13 THR 13 A LEU 14 n 14 LEU 14 A ILE 15 n 15 ILE 15 A LYS 16 n 16 LYS 16 A ALA 17 n 17 ALA 17 A ILE 18 n 18 ILE 18 A ASP 19 n 19 ASP 19 A GLY 20 n 20 GLY 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A VAL 23 n 23 VAL 23 A LYS 24 n 24 LYS 24 A LEU 25 n 25 LEU 25 A MET 26 n 26 MET 26 A TYR 27 n 27 TYR 27 A LYS 28 n 28 LYS 28 A GLY 29 n 29 GLY 29 A GLN 30 n 30 GLN 30 A PRO 31 n 31 PRO 31 A MET 32 n 32 MET 32 A THR 33 n 33 THR 33 A PHE 34 n 34 PHE 34 A ARG 35 n 35 ARG 35 A LEU 36 n 36 LEU 36 A LEU 37 n 37 LEU 37 A LEU 38 n 38 LEU 38 A VAL 39 n 39 VAL 39 A ASP 40 n 40 ASP 40 A THR 41 n 41 THR 41 A PRO 42 n 42 PRO 42 A GLU 43 n 43 GLU 43 A THR 44 n 44 THR 44 A LYS 45 n 45 LYS 45 A HIS 46 n 46 HIS 46 A PRO 47 n 47 PRO 47 A LYS 48 n 48 LYS 48 A LYS 49 n 49 LYS 49 A GLY 50 n 50 GLY 50 A VAL 51 n 51 VAL 51 A GLU 52 n 52 GLU 52 A LYS 53 n 53 LYS 53 A TYR 54 n 54 TYR 54 A GLY 55 n 55 GLY 55 A PRO 56 n 56 PRO 56 A GLU 57 n 57 GLU 57 A ALA 58 n 58 ALA 58 A SER 59 n 59 SER 59 A ALA 60 n 60 ALA 60 A PHE 61 n 61 PHE 61 A THR 62 n 62 THR 62 A LYS 63 n 63 LYS 63 A LYS 64 n 64 LYS 64 A MET 65 n 65 MET 65 A VAL 66 n 66 VAL 66 A GLU 67 n 67 GLU 67 A ASN 68 n 68 ASN 68 A ALA 69 n 69 ALA 69 A LYS 70 n 70 LYS 70 A LYS 71 n 71 LYS 71 A ILE 72 n 72 ILE 72 A GLU 73 n 73 GLU 73 A VAL 74 n 74 VAL 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A ASP 77 n 77 ASP 77 A LYS 78 n 78 LYS 78 A GLY 79 n 79 GLY 79 A GLN 80 n 80 GLN 80 A ARG 81 n 81 ARG 81 A THR 82 n 82 THR 82 A ASP 83 n 83 ASP 83 A LYS 84 n 84 LYS 84 A TYR 85 n 85 TYR 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A GLY 88 n 88 GLY 88 A LEU 89 n 89 LEU 89 A ALA 90 n 90 ALA 90 A TYR 91 n 91 TYR 91 A ILE 92 n 92 ILE 92 A TYR 93 n 93 TYR 93 A ALA 94 n 94 ALA 94 A ASP 95 n 95 ASP 95 A GLY 96 n 96 GLY 96 A LYS 97 n 97 LYS 97 A MET 98 n 98 MET 98 A VAL 99 n 99 VAL 99 A ASN 100 n 100 ASN 100 A GLU 101 n 101 GLU 101 A ALA 102 n 102 ALA 102 A LEU 103 n 103 LEU 103 A VAL 104 n 104 VAL 104 A ARG 105 n 105 ARG 105 A GLN 106 n 106 GLN 106 A GLY 107 n 107 GLY 107 A LEU 108 n 108 LEU 108 A ALA 109 n 109 ALA 109 A LYS 110 n 110 LYS 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A TYR 113 n 113 TYR 113 A VAL 114 n 114 VAL 114 A TYR 115 n 115 TYR 115 A LYS 116 n 116 LYS 116 A PRO 117 n 117 PRO 117 A ASN 118 n 118 ASN 118 A ASN 119 n 119 ASN 119 A THR 120 n 120 THR 120 A HIS 121 n 121 HIS 121 A GLU 122 n 122 GLU 122 A GLN 123 n 123 GLN 123 A LEU 124 n 124 LEU 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A SER 128 n 128 SER 128 A GLU 129 n 129 GLU 129 A ALA 130 n 130 ALA 130 A GLN 131 n 131 GLN 131 A ALA 132 n 132 ALA 132 A LYS 133 n 133 LYS 133 A LYS 134 n 134 LYS 134 A GLU 135 n 135 GLU 135 A LYS 136 n 136 LYS 136 A LEU 137 n 137 LEU 137 A ASN 138 n 138 ASN 138 A ILE 139 n 139 ILE 139 A TRP 140 n 140 TRP 140 A SER 141 n 141 SER 141 A GLU 142 n 142 GLU 142 A ASP 143 n 143 ASP 143 A ASN 144 n 144 ASN 144 A ALA 145 n 145 ALA 145 A ASP 146 n 146 ASP 146 A SER 147 n 147 SER 147 A GLY 148 n 148 GLY 148 A GLN 149 n 149 GLN 149 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 15 A N ILE 15 A O LYS 24 A O LYS 24 A N TYR 27 A N TYR 27 A O GLN 30 A O GLN 30 A N ARG 35 A N ARG 35 A O GLY 88 A O GLY 88 A O TYR 93 A O TYR 93 A N GLU 73 A N GLU 73 A N VAL 74 A N VAL 74 A O GLU 10 A O GLU 10 A N ILE 15 A N ILE 15 A O LYS 24 A O LYS 24 A N TYR 27 A N TYR 27 A O GLN 30 A O GLN 30 A N ARG 35 A N ARG 35 A O GLY 88 A O GLY 88 A N ALA 94 A N ALA 94 A O LYS 97 A O LYS 97 1 A ARG 35 0.201 SIDE CHAIN 1 A ARG 81 0.307 SIDE CHAIN 1 A ARG 87 0.269 SIDE CHAIN 1 A ARG 105 0.282 SIDE CHAIN 1 A ARG 126 0.301 SIDE CHAIN 1 A THR 2 52.38 177.63 1 A LYS 5 73.15 153.87 1 A LYS 16 -167.30 112.91 1 A ILE 18 -121.47 -60.35 1 A ASP 19 -118.98 -167.89 1 A LYS 53 -88.10 -86.05 1 A GLU 57 -127.43 -56.90 1 A ALA 69 -48.86 96.48 1 A GLN 80 -54.91 -176.58 1 A ASP 83 -69.63 -157.00 1 A ALA 90 -164.47 -169.45 1 A MET 98 -63.93 98.02 1 A ASN 118 -55.08 94.41 1 A ASN 119 -160.13 36.26 1 A THR 120 -75.50 -70.75 1 A ASN 138 56.41 -104.80 1 A ALA 145 -143.40 -52.09 1 A SER 147 -111.81 68.92 minimized average Averaged structure for unligated Staphylococcal nuclease-H124L 1 N N A GLU 57 A GLU 57 HELX_P A ALA 69 A ALA 69 1 1 13 A VAL 99 A VAL 99 HELX_P A GLN 106 A GLN 106 1 2 8 A HIS 121 A HIS 121 HELX_P A LYS 136 A LYS 136 1 3 16 A LEU 137 A LEU 137 HELX_P A SER 141 A SER 141 5 4 5 HYDROLASE beta barrel, alpha helix, HYDROLASE A LYS 116 A LYS 116 1 A PRO 117 A PRO 117 0.10 NUC_STAAU UNP 1 83 P00644 ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADSGQ 83 231 1JOO 1 149 P00644 A 1 1 149 1 HIS engineered mutation LEU 124 1JOO A P00644 UNP 206 124 6 5 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A THR 13 A THR 13 A ALA 17 A ALA 17 A THR 22 A THR 22 A TYR 27 A TYR 27 A GLN 30 A GLN 30 A LEU 36 A LEU 36 A GLY 88 A GLY 88 A ALA 94 A ALA 94 A ILE 72 A ILE 72 A PHE 76 A PHE 76 A GLU 10 A GLU 10 A PRO 11 A PRO 11 A THR 13 A THR 13 A ALA 17 A ALA 17 A THR 22 A THR 22 A TYR 27 A TYR 27 A GLN 30 A GLN 30 A LEU 36 A LEU 36 A GLY 88 A GLY 88 A ALA 94 A ALA 94 A LYS 97 A LYS 97 A MET 98 A MET 98