0.014793
0.008541
0.000000
0.000000
0.017081
0.000000
0.000000
0.000000
0.006700
0.00000
0.00000
0.00000
Lee, X.
Thompson, A.
Zhang, Z.
Hoa, T.-T.
Biesterfeldt, J.
Ogata, C.
Xu, L.
Johnston, R.A.Z.
Young, N.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
67.600
67.600
149.260
C8 H15 N O6
221.208
2-acetamido-2-deoxy-alpha-D-galactopyranose
N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
D-saccharide, alpha linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
S
C
N
3
N
O
N
4
R
C
N
5
N
N
N
6
R
C
N
7
N
O
N
8
R
C
N
9
N
O
N
10
R
C
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
O
N
15
N
C
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
O
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
N
N
45
S
C
N
46
N
C
N
47
N
O
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
N
N
52
N
C
N
53
N
N
N
54
N
N
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
C
N
77
N
O
N
78
N
N
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
R
C
N
105
R
C
N
106
S
C
N
107
R
C
N
108
R
C
N
109
N
C
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
N
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
N
C
Y
182
N
C
Y
183
N
N
Y
184
N
C
Y
185
N
C
Y
186
N
N
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
S
C
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
N
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
S
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
O
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
R
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
N
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
Y
181
N
sing
Y
182
N
doub
Y
183
N
doub
N
184
N
sing
Y
185
N
sing
N
186
N
sing
Y
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
273
6312
6318
10.1074/jbc.273.11.6312
9497359
Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc.
1998
10.2210/pdb1jot/pdb
pdb_00001jot
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
300
1
AREA DETECTOR
1991-07
XUONG-HAMLIN MULTIWIRE
YES
M
x-ray
1
1.5434
1.0
1.5434
ROTATING ANODE
RIGAKU
14768.595
AGGLUTININ
1
nat
polymer
2144.373
AGGLUTININ
1
nat
polymer
383.349
beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose
1
man
branched
18.015
water
91
nat
water
Thomsen-Friedenreich antigen
no
no
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTV
IRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTV
IRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
A
polypeptide(L)
no
no
GRNGKSQSIIVGPWGDRVTN
GRNGKSQSIIVGPWGDRVTN
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Osage orange
FROM THE SEEDS OF THE MORACEAE PLANT FAMILY
Maclura
sample
3496
SEEDS
Maclura pomifera
Osage orange
FROM THE SEEDS OF THE MORACEAE PLANT FAMILY
Maclura
sample
3496
SEEDS
Maclura pomifera
1
2.83
56
VAPOR DIFFUSION, SITTING DROP
4.5
CONVENTIONAL VAPOR DIFFUSION OF SITTING DROP. 1.0M OF LITHIUM SULFATE BUFFERED WITH 0.2 SODIUM CITRATE AT PH4.5 IN RESERVOIR DROPS MADE OF 15 MICROLITERS OF PROTEIN SOLUTION (10.0 MG/ML) AND EQUAL VOLUMN OF RESERVOIR SOLUTION. ROOM TEMPERATURE., vapor diffusion - sitting drop
diffrn_source
pdbx_database_status
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Data collection
Other
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Structure summary
Refinement description
1
0
1998-12-30
1
1
2008-03-24
1
2
2011-07-13
1
3
2018-03-07
2
0
2020-07-29
2
1
2024-02-07
2
2
2024-04-03
_diffrn_source.source
_pdbx_database_status.process_site
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
NGA
135
n
C
A2G
1
GAL
134
n
C
GAL
2
DGalpNAca
N-acetyl-a-D-galactopyranosamine
a-D-GalpNAc
GalNAc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
Y
BNL
1997-12-05
REL
REL
oligosaccharide
DGalpb1-3DGalpNAca1-ROH
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a3-b1
3
PDB2Glycan
1.1.0
WURCS
[][a-D-GalpNAc]{[(3+1)][b-D-Galp]{}}
3
PDB-CARE
LINUCS
C1
O3
GAL
A2G
2
1
3
O1
HO3
sing
n
n
HOH
water
STRUCTURE OBTAINED FROM MAD
Other
experimental model
Antigen
oligosaccharide
Thomsen-Friedenreich antigen
Oligosaccharide
HOH
1
4
HOH
HOH
136
A
HOH
2
4
HOH
HOH
137
A
HOH
3
4
HOH
HOH
138
A
HOH
4
4
HOH
HOH
139
A
HOH
5
4
HOH
HOH
140
A
HOH
6
4
HOH
HOH
141
A
HOH
7
4
HOH
HOH
142
A
HOH
8
4
HOH
HOH
143
A
HOH
9
4
HOH
HOH
144
A
HOH
10
4
HOH
HOH
145
A
HOH
11
4
HOH
HOH
146
A
HOH
12
4
HOH
HOH
147
A
HOH
13
4
HOH
HOH
148
A
HOH
14
4
HOH
HOH
149
A
HOH
15
4
HOH
HOH
150
A
HOH
16
4
HOH
HOH
151
A
HOH
17
4
HOH
HOH
152
A
HOH
18
4
HOH
HOH
153
A
HOH
20
4
HOH
HOH
154
A
HOH
21
4
HOH
HOH
155
A
HOH
22
4
HOH
HOH
156
A
HOH
23
4
HOH
HOH
157
A
HOH
25
4
HOH
HOH
158
A
HOH
26
4
HOH
HOH
159
A
HOH
27
4
HOH
HOH
160
A
HOH
28
4
HOH
HOH
161
A
HOH
29
4
HOH
HOH
162
A
HOH
30
4
HOH
HOH
163
A
HOH
31
4
HOH
HOH
164
A
HOH
32
4
HOH
HOH
165
A
HOH
33
4
HOH
HOH
166
A
HOH
34
4
HOH
HOH
167
A
HOH
35
4
HOH
HOH
168
A
HOH
36
4
HOH
HOH
169
A
HOH
39
4
HOH
HOH
170
A
HOH
40
4
HOH
HOH
171
A
HOH
41
4
HOH
HOH
172
A
HOH
42
4
HOH
HOH
173
A
HOH
43
4
HOH
HOH
174
A
HOH
45
4
HOH
HOH
175
A
HOH
46
4
HOH
HOH
176
A
HOH
47
4
HOH
HOH
177
A
HOH
48
4
HOH
HOH
178
A
HOH
49
4
HOH
HOH
179
A
HOH
50
4
HOH
HOH
180
A
HOH
51
4
HOH
HOH
181
A
HOH
52
4
HOH
HOH
182
A
HOH
53
4
HOH
HOH
183
A
HOH
54
4
HOH
HOH
184
A
HOH
55
4
HOH
HOH
185
A
HOH
56
4
HOH
HOH
186
A
HOH
57
4
HOH
HOH
187
A
HOH
58
4
HOH
HOH
188
A
HOH
59
4
HOH
HOH
189
A
HOH
60
4
HOH
HOH
190
A
HOH
61
4
HOH
HOH
191
A
HOH
62
4
HOH
HOH
192
A
HOH
63
4
HOH
HOH
193
A
HOH
64
4
HOH
HOH
194
A
HOH
65
4
HOH
HOH
195
A
HOH
66
4
HOH
HOH
196
A
HOH
67
4
HOH
HOH
197
A
HOH
68
4
HOH
HOH
198
A
HOH
69
4
HOH
HOH
199
A
HOH
71
4
HOH
HOH
200
A
HOH
72
4
HOH
HOH
201
A
HOH
73
4
HOH
HOH
202
A
HOH
74
4
HOH
HOH
203
A
HOH
75
4
HOH
HOH
204
A
HOH
76
4
HOH
HOH
205
A
HOH
77
4
HOH
HOH
206
A
HOH
79
4
HOH
HOH
207
A
HOH
80
4
HOH
HOH
208
A
HOH
81
4
HOH
HOH
209
A
HOH
82
4
HOH
HOH
210
A
HOH
83
4
HOH
HOH
211
A
HOH
85
4
HOH
HOH
212
A
HOH
86
4
HOH
HOH
213
A
HOH
87
4
HOH
HOH
214
A
HOH
88
4
HOH
HOH
215
A
HOH
89
4
HOH
HOH
216
A
HOH
90
4
HOH
HOH
217
A
HOH
91
4
HOH
HOH
218
A
HOH
19
4
HOH
HOH
22
B
HOH
24
4
HOH
HOH
23
B
HOH
37
4
HOH
HOH
24
B
HOH
38
4
HOH
HOH
25
B
HOH
44
4
HOH
HOH
26
B
HOH
70
4
HOH
HOH
27
B
HOH
78
4
HOH
HOH
28
B
HOH
84
4
HOH
HOH
29
B
GLY
1
n
1
GLY
1
A
VAL
2
n
2
VAL
2
A
THR
3
n
3
THR
3
A
PHE
4
n
4
PHE
4
A
ASP
5
n
5
ASP
5
A
ASP
6
n
6
ASP
6
A
GLY
7
n
7
GLY
7
A
ALA
8
n
8
ALA
8
A
TYR
9
n
9
TYR
9
A
THR
10
n
10
THR
10
A
GLY
11
n
11
GLY
11
A
ILE
12
n
12
ILE
12
A
ARG
13
n
13
ARG
13
A
GLU
14
n
14
GLU
14
A
ILE
15
n
15
ILE
15
A
ASN
16
n
16
ASN
16
A
PHE
17
n
17
PHE
17
A
GLU
18
n
18
GLU
18
A
TYR
19
n
19
TYR
19
A
ASN
20
n
20
ASN
20
A
SER
21
n
21
SER
21
A
GLU
22
n
22
GLU
22
A
THR
23
n
23
THR
23
A
ALA
24
n
24
ALA
24
A
ILE
25
n
25
ILE
25
A
GLY
26
n
26
GLY
26
A
GLY
27
n
27
GLY
27
A
LEU
28
n
28
LEU
28
A
ARG
29
n
29
ARG
29
A
VAL
30
n
30
VAL
30
A
THR
31
n
31
THR
31
A
TYR
32
n
32
TYR
32
A
ASP
33
n
33
ASP
33
A
LEU
34
n
34
LEU
34
A
ASN
35
n
35
ASN
35
A
GLY
36
n
36
GLY
36
A
MET
37
n
37
MET
37
A
PRO
38
n
38
PRO
38
A
PHE
39
n
39
PHE
39
A
VAL
40
n
40
VAL
40
A
ALA
41
n
41
ALA
41
A
GLU
42
n
42
GLU
42
A
ASP
43
n
43
ASP
43
A
HIS
44
n
44
HIS
44
A
LYS
45
n
45
LYS
45
A
SER
46
n
46
SER
46
A
PHE
47
n
47
PHE
47
A
ILE
48
n
48
ILE
48
A
THR
49
n
49
THR
49
A
GLY
50
n
50
GLY
50
A
PHE
51
n
51
PHE
51
A
LYS
52
n
52
LYS
52
A
PRO
53
n
53
PRO
53
A
VAL
54
n
54
VAL
54
A
LYS
55
n
55
LYS
55
A
ILE
56
n
56
ILE
56
A
SER
57
n
57
SER
57
A
LEU
58
n
58
LEU
58
A
GLU
59
n
59
GLU
59
A
PHE
60
n
60
PHE
60
A
PRO
61
n
61
PRO
61
A
SER
62
n
62
SER
62
A
GLU
63
n
63
GLU
63
A
TYR
64
n
64
TYR
64
A
ILE
65
n
65
ILE
65
A
VAL
66
n
66
VAL
66
A
GLU
67
n
67
GLU
67
A
VAL
68
n
68
VAL
68
A
SER
69
n
69
SER
69
A
GLY
70
n
70
GLY
70
A
TYR
71
n
71
TYR
71
A
VAL
72
n
72
VAL
72
A
GLY
73
n
73
GLY
73
A
LYS
74
n
74
LYS
74
A
VAL
75
n
75
VAL
75
A
GLU
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
TYR
78
n
78
TYR
78
A
THR
79
n
79
THR
79
A
VAL
80
n
80
VAL
80
A
ILE
81
n
81
ILE
81
A
ARG
82
n
82
ARG
82
A
SER
83
n
83
SER
83
A
LEU
84
n
84
LEU
84
A
THR
85
n
85
THR
85
A
PHE
86
n
86
PHE
86
A
LYS
87
n
87
LYS
87
A
THR
88
n
88
THR
88
A
ASN
89
n
89
ASN
89
A
LYS
90
n
90
LYS
90
A
GLN
91
n
91
GLN
91
A
THR
92
n
92
THR
92
A
TYR
93
n
93
TYR
93
A
GLY
94
n
94
GLY
94
A
PRO
95
n
95
PRO
95
A
TYR
96
n
96
TYR
96
A
GLY
97
n
97
GLY
97
A
VAL
98
n
98
VAL
98
A
THR
99
n
99
THR
99
A
ASN
100
n
100
ASN
100
A
GLY
101
n
101
GLY
101
A
THR
102
n
102
THR
102
A
PRO
103
n
103
PRO
103
A
PHE
104
n
104
PHE
104
A
SER
105
n
105
SER
105
A
LEU
106
n
106
LEU
106
A
PRO
107
n
107
PRO
107
A
ILE
108
n
108
ILE
108
A
GLU
109
n
109
GLU
109
A
ASN
110
n
110
ASN
110
A
GLY
111
n
111
GLY
111
A
LEU
112
n
112
LEU
112
A
ILE
113
n
113
ILE
113
A
VAL
114
n
114
VAL
114
A
GLY
115
n
115
GLY
115
A
PHE
116
n
116
PHE
116
A
LYS
117
n
117
LYS
117
A
GLY
118
n
118
GLY
118
A
SER
119
n
119
SER
119
A
ILE
120
n
120
ILE
120
A
GLY
121
n
121
GLY
121
A
TYR
122
n
122
TYR
122
A
TRP
123
n
123
TRP
123
A
LEU
124
n
124
LEU
124
A
ASP
125
n
125
ASP
125
A
TYR
126
n
126
TYR
126
A
PHE
127
n
127
PHE
127
A
SER
128
n
128
SER
128
A
ILE
129
n
129
ILE
129
A
TYR
130
n
130
TYR
130
A
LEU
131
n
131
LEU
131
A
SER
132
n
132
SER
132
A
LEU
133
n
133
LEU
133
A
n
1
2
B
ARG
3
n
2
ARG
3
B
ASN
4
n
3
ASN
4
B
GLY
5
n
4
GLY
5
B
LYS
6
n
5
LYS
6
B
SER
7
n
6
SER
7
B
GLN
8
n
7
GLN
8
B
SER
9
n
8
SER
9
B
ILE
10
n
9
ILE
10
B
ILE
11
n
10
ILE
11
B
VAL
12
n
11
VAL
12
B
GLY
13
n
12
GLY
13
B
PRO
14
n
13
PRO
14
B
TRP
15
n
14
TRP
15
B
GLY
16
n
15
GLY
16
B
ASP
17
n
16
ASP
17
B
ARG
18
n
17
ARG
18
B
n
18
19
B
n
19
20
B
n
20
21
B
author_and_software_defined_assembly
PISA,PQS
8
octameric
15850
-51
23530
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
x-y,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_555
-x+y,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
2
A
O
VAL
2
A
N
ILE
120
A
N
ILE
120
A
O
LEU
112
A
O
LEU
112
A
N
SER
132
A
N
SER
132
A
O
LYS
52
A
O
LYS
52
A
N
TYR
19
A
N
TYR
19
A
O
GLY
11
A
O
GLY
11
A
N
ASP
33
A
N
ASP
33
A
O
TYR
32
A
O
TYR
32
A
N
PHE
39
A
N
PHE
39
A
O
THR
102
A
O
THR
102
A
N
VAL
72
A
N
VAL
72
A
O
GLY
73
A
O
GLY
73
A
N
VAL
80
A
N
VAL
80
A
O
VAL
66
A
O
VAL
66
A
N
LYS
87
A
N
LYS
87
1
B
CG
ARG
3
B
CG
ARG
2
1
Y
1
B
CD
ARG
3
B
CD
ARG
2
1
Y
1
B
NE
ARG
3
B
NE
ARG
2
1
Y
1
B
CZ
ARG
3
B
CZ
ARG
2
1
Y
1
B
NH1
ARG
3
B
NH1
ARG
2
1
Y
1
B
NH2
ARG
3
B
NH2
ARG
2
1
Y
1
B
GLY
2
B
GLY
1
1
Y
1
B
VAL
19
B
VAL
18
1
Y
1
B
THR
20
B
THR
19
1
Y
1
B
ASN
21
B
ASN
20
1
Y
1
A
THR
23
-113.23
-91.99
0.222
0.172
0.172
2.20
6.0
516
9636
7.5
93.9
YES
1
2
MOLECULAR REPLACEMENT
STRUCTURE OBTAINED FROM MAD
2.20
6.0
91
1283
26
0
1166
0.006
1.302
29.34
0.656
0.291
0.236
2.3
45
1006
6
2.20
30.0
1JOT
10135
2
0.036
1
7.84
9.6
93.9999
2.20
3.99
1
model building
X-PLOR
3.85
refinement
X-PLOR
3.85
data reduction
SOFTWARE
CAME WITH THE DETECTOR
data scaling
HAMLIN
phasing
X-PLOR
3.85
STRUCTURE OF THE LECTIN MPA COMPLEXED WITH T-ANTIGEN DISACCHARIDE
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
covale
1.439
both
C
A2G
1
C
O3
A2G
1_555
C
GAL
2
C
C1
GAL
1_555
LECTIN
MULTI-WAVELENGTH ANOMALOUS DIFFRACTION (MAD), T-ANTIGEN, LECTIN, MACLURA POMIFERA, BETA PRISM
A
PHE
60
A
PHE
60
1
A
PRO
61
A
PRO
61
0.24
A
GLY
94
A
GLY
94
1
A
PRO
95
A
PRO
95
0.26
B
GLY
13
B
GLY
12
1
B
PRO
14
B
PRO
13
0.17
LECA_MACPO
UNP
1
1
P18674
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTV
IRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
LEC2_MACPO
UNP
2
1
P18676
GRNGKSQSIIVGPWGDRVTN
1
133
1JOT
1
133
P18674
A
1
1
133
1
20
1JOT
2
21
P18676
B
2
1
20
3
4
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
2
A
VAL
2
A
ASP
5
A
ASP
5
A
LEU
112
A
LEU
112
A
ILE
120
A
ILE
120
A
TYR
126
A
TYR
126
A
SER
132
A
SER
132
A
LYS
52
A
LYS
52
A
SER
57
A
SER
57
A
GLY
11
A
GLY
11
A
TYR
19
A
TYR
19
A
LEU
28
A
LEU
28
A
LEU
34
A
LEU
34
A
MET
37
A
MET
37
A
VAL
40
A
VAL
40
A
THR
102
A
THR
102
A
PRO
107
A
PRO
107
A
GLU
67
A
GLU
67
A
VAL
75
A
VAL
75
A
TYR
78
A
TYR
78
A
ILE
81
A
ILE
81
A
ILE
65
A
ILE
65
A
TYR
71
A
TYR
71
A
SER
83
A
SER
83
A
THR
88
A
THR
88
181
P 64 2 2