.015603
.000000
.004383
.000000
.032468
.000000
.000000
.000000
.030046
.00000
.00000
.00000
Urayama, P.
Gruner, S.M.
Phillips Jr., G.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
105.69
90.00
64.090
30.800
34.570
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
C
Y
127
N
C
Y
128
N
C
Y
129
N
C
Y
130
N
C
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
Y
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
Y
161
N
N
N
162
N
N
Y
163
N
N
N
164
N
N
N
165
N
FE
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
Y
203
N
C
Y
204
N
N
Y
205
N
C
Y
206
N
C
Y
207
N
N
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
S
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
N
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
S
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
S
N
366
N
O
N
367
N
O
N
368
N
O
N
369
N
O
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
R
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
N
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
Y
128
N
doub
Y
129
N
sing
Y
130
N
sing
N
131
N
sing
Y
132
N
doub
N
133
N
sing
Y
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
sing
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
Y
418
N
doub
Y
419
N
sing
Y
420
N
sing
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
UK
Structure
STRUE6
2005
0969-2126
10
51
60
10.1016/S0969-2126(01)00699-2
11796110
Probing substates in sperm whale myoglobin using high-pressure crystallography.
2002
10.2210/pdb1jp8/pdb
pdb_00001jp8
1.000000
.000000
.000000
.000000
1.000000
.000000
.000000
.000000
1.000000
.00000
.00000
.00000
295
1
295
1
AREA DETECTOR
1997-12-05
UCSD MARK II
AREA DETECTOR
1998-04-10
UCSD MARK II
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
2
1.541
1.0
1.0
1.541
ROTATING ANODE
RIGAKU
1.541
ROTATING ANODE
RIGAKU
17234.951
myoglobin
1
nat
polymer
96.063
SULFATE ION
3
syn
non-polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
18.015
water
66
nat
water
no
no
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG
HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG
HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sperm whale
Physeter
sample
9755
Physeter catodon
2
1.91
35.45
295K; 150MPa; pH6; Kundrot-Richards type beryllium pressure cell
batch
6
ammonium sulfate, pH 6, batch, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-01-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Sperm Whale met-Myoglobin (room temperature; room pressure)
Sperm Whale met-Myoglobin (low temperature; high pressure--slow cooled (1.7 K/s) to 77K while under 200MPa) (compared to 1jpb to show reproducibility of slow cooling technique).
Sperm Whale met-Myoglobin (low temperature; high pressure--slow cooled (1.7 K/s) to 77K while under 200MPa) (compared to 1jp9 to show reproducibility of slow cooling technique).
RCSB
Y
RCSB
2001-08-01
REL
REL
SO4
SULFATE ION
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
1VXH
PDB ENTRY 1VXH
PDB
experimental model
SO4
201
2
SO4
SO4
201
A
SO4
202
2
SO4
SO4
202
A
SO4
203
2
SO4
SO4
203
A
HEM
200
3
HEM
HEM
200
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
VAL
1
n
1
VAL
1
A
LEU
2
n
2
LEU
2
A
SER
3
n
3
SER
3
A
GLU
4
n
4
GLU
4
A
GLY
5
n
5
GLY
5
A
GLU
6
n
6
GLU
6
A
TRP
7
n
7
TRP
7
A
GLN
8
n
8
GLN
8
A
LEU
9
n
9
LEU
9
A
VAL
10
n
10
VAL
10
A
LEU
11
n
11
LEU
11
A
HIS
12
n
12
HIS
12
A
VAL
13
n
13
VAL
13
A
TRP
14
n
14
TRP
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
ALA
19
n
19
ALA
19
A
ASP
20
n
20
ASP
20
A
VAL
21
n
21
VAL
21
A
ALA
22
n
22
ALA
22
A
GLY
23
n
23
GLY
23
A
HIS
24
n
24
HIS
24
A
GLY
25
n
25
GLY
25
A
GLN
26
n
26
GLN
26
A
ASP
27
n
27
ASP
27
A
ILE
28
n
28
ILE
28
A
LEU
29
n
29
LEU
29
A
ILE
30
n
30
ILE
30
A
ARG
31
n
31
ARG
31
A
LEU
32
n
32
LEU
32
A
PHE
33
n
33
PHE
33
A
LYS
34
n
34
LYS
34
A
SER
35
n
35
SER
35
A
HIS
36
n
36
HIS
36
A
PRO
37
n
37
PRO
37
A
GLU
38
n
38
GLU
38
A
THR
39
n
39
THR
39
A
LEU
40
n
40
LEU
40
A
GLU
41
n
41
GLU
41
A
LYS
42
n
42
LYS
42
A
PHE
43
n
43
PHE
43
A
ASP
44
n
44
ASP
44
A
ARG
45
n
45
ARG
45
A
PHE
46
n
46
PHE
46
A
LYS
47
n
47
LYS
47
A
HIS
48
n
48
HIS
48
A
LEU
49
n
49
LEU
49
A
LYS
50
n
50
LYS
50
A
THR
51
n
51
THR
51
A
GLU
52
n
52
GLU
52
A
ALA
53
n
53
ALA
53
A
GLU
54
n
54
GLU
54
A
MET
55
n
55
MET
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
SER
58
n
58
SER
58
A
GLU
59
n
59
GLU
59
A
ASP
60
n
60
ASP
60
A
LEU
61
n
61
LEU
61
A
LYS
62
n
62
LYS
62
A
LYS
63
n
63
LYS
63
A
HIS
64
n
64
HIS
64
A
GLY
65
n
65
GLY
65
A
VAL
66
n
66
VAL
66
A
THR
67
n
67
THR
67
A
VAL
68
n
68
VAL
68
A
LEU
69
n
69
LEU
69
A
THR
70
n
70
THR
70
A
ALA
71
n
71
ALA
71
A
LEU
72
n
72
LEU
72
A
GLY
73
n
73
GLY
73
A
ALA
74
n
74
ALA
74
A
ILE
75
n
75
ILE
75
A
LEU
76
n
76
LEU
76
A
LYS
77
n
77
LYS
77
A
LYS
78
n
78
LYS
78
A
LYS
79
n
79
LYS
79
A
GLY
80
n
80
GLY
80
A
HIS
81
n
81
HIS
81
A
HIS
82
n
82
HIS
82
A
GLU
83
n
83
GLU
83
A
ALA
84
n
84
ALA
84
A
GLU
85
n
85
GLU
85
A
LEU
86
n
86
LEU
86
A
LYS
87
n
87
LYS
87
A
PRO
88
n
88
PRO
88
A
LEU
89
n
89
LEU
89
A
ALA
90
n
90
ALA
90
A
GLN
91
n
91
GLN
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
ALA
94
n
94
ALA
94
A
THR
95
n
95
THR
95
A
LYS
96
n
96
LYS
96
A
HIS
97
n
97
HIS
97
A
LYS
98
n
98
LYS
98
A
ILE
99
n
99
ILE
99
A
PRO
100
n
100
PRO
100
A
ILE
101
n
101
ILE
101
A
LYS
102
n
102
LYS
102
A
TYR
103
n
103
TYR
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
PHE
106
n
106
PHE
106
A
ILE
107
n
107
ILE
107
A
SER
108
n
108
SER
108
A
GLU
109
n
109
GLU
109
A
ALA
110
n
110
ALA
110
A
ILE
111
n
111
ILE
111
A
ILE
112
n
112
ILE
112
A
HIS
113
n
113
HIS
113
A
VAL
114
n
114
VAL
114
A
LEU
115
n
115
LEU
115
A
HIS
116
n
116
HIS
116
A
SER
117
n
117
SER
117
A
ARG
118
n
118
ARG
118
A
HIS
119
n
119
HIS
119
A
PRO
120
n
120
PRO
120
A
GLY
121
n
121
GLY
121
A
ASP
122
n
122
ASP
122
A
PHE
123
n
123
PHE
123
A
GLY
124
n
124
GLY
124
A
ALA
125
n
125
ALA
125
A
ASP
126
n
126
ASP
126
A
ALA
127
n
127
ALA
127
A
GLN
128
n
128
GLN
128
A
GLY
129
n
129
GLY
129
A
ALA
130
n
130
ALA
130
A
MET
131
n
131
MET
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
ALA
134
n
134
ALA
134
A
LEU
135
n
135
LEU
135
A
GLU
136
n
136
GLU
136
A
LEU
137
n
137
LEU
137
A
PHE
138
n
138
PHE
138
A
ARG
139
n
139
ARG
139
A
LYS
140
n
140
LYS
140
A
ASP
141
n
141
ASP
141
A
ILE
142
n
142
ILE
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
LYS
145
n
145
LYS
145
A
TYR
146
n
146
TYR
146
A
LYS
147
n
147
LYS
147
A
GLU
148
n
148
GLU
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
TYR
151
n
151
TYR
151
A
GLN
152
n
152
GLN
152
A
n
153
153
A
author_defined_assembly
1
monomeric
A
HIS
93
A
NE2
HIS
93
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
NA
HEM
1_555
90.8
A
HIS
93
A
NE2
HIS
93
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
NB
HEM
1_555
83.1
A
HEM
200
E
NA
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
NB
HEM
1_555
89.8
A
HIS
93
A
NE2
HIS
93
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
NC
HEM
1_555
90.4
A
HEM
200
E
NA
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
NC
HEM
1_555
178.5
A
HEM
200
E
NB
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
NC
HEM
1_555
89.3
A
HIS
93
A
NE2
HIS
93
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
ND
HEM
1_555
98.4
A
HEM
200
E
NA
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
ND
HEM
1_555
90.2
A
HEM
200
E
NB
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
ND
HEM
1_555
178.6
A
HEM
200
E
NC
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HEM
200
E
ND
HEM
1_555
90.6
A
HIS
93
A
NE2
HIS
93
1_555
A
HEM
200
E
FE
HEM
1_555
A
HOH
309
F
O
HOH
1_555
169.1
A
HEM
200
E
NA
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HOH
309
F
O
HOH
1_555
99.6
A
HEM
200
E
NB
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HOH
309
F
O
HOH
1_555
93.6
A
HEM
200
E
NC
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HOH
309
F
O
HOH
1_555
79.2
A
HEM
200
E
ND
HEM
1_555
A
HEM
200
E
FE
HEM
1_555
A
HOH
309
F
O
HOH
1_555
85.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
153
A
GLY
153
1
Y
1
A
ASP
20
-155.94
70.21
PROTEIN.PARAM
PROTEIN.TOP
WATER.PARAM
WATER.TOP
HEME.PARAM
HEME.TOP
SO4.PARAM
SO4.TOP
15.1
-5.46
.00
-.85
2.09
.00
3.36
residue 153 was disordered
0.2360000
.010
0.1650000
2.30
9.14
560
5306
10.6
90.7
RANDOM
774116.68
.000000
1
RESTRAINED
THROUGHOUT
2.0
PDB ENTRY 1VXH
Engh & Huber
FLAT MODEL
12.385
.344581
.31
.21
9.20
.24
.13
2.30
9.14
66
1336
58
0
1212
.006
1.0
16.5
1.02
1.32
1.50
2.10
2.00
2.23
2.00
3.36
2.50
0.2940000
.031
0.1950000
2.44
91
684
6
11.7
80.7
18.6
2.3
9.2
1JP8
5327
5327
0
0
0.0570000
1,2
12.1
2.9
90.1
0.1380000
2.30
2.42
6.0
671
2.4
79.6
refinement
CNS
data scaling
CCP4
(SCALA)
phasing
CNS
Sperm Whale met-Myoglobin (room temperature; high pressure)
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
SER
3
A
SER
3
HELX_P
A
ALA
19
A
ALA
19
1
1
17
A
ASP
20
A
ASP
20
HELX_P
A
HIS
36
A
HIS
36
1
2
17
A
HIS
36
A
HIS
36
HELX_P
A
GLU
41
A
GLU
41
1
3
6
A
THR
51
A
THR
51
HELX_P
A
ALA
57
A
ALA
57
1
4
7
A
SER
58
A
SER
58
HELX_P
A
LYS
77
A
LYS
77
1
5
20
A
HIS
82
A
HIS
82
HELX_P
A
LYS
96
A
LYS
96
1
6
15
A
PRO
100
A
PRO
100
HELX_P
A
HIS
119
A
HIS
119
1
7
20
A
PRO
120
A
PRO
120
HELX_P
A
PHE
123
A
PHE
123
5
8
4
A
GLY
124
A
GLY
124
HELX_P
A
GLY
150
A
GLY
150
1
9
27
metalc
2.330
A
HIS
93
A
NE2
HIS
93
1_555
A
HEM
200
E
FE
HEM
1_555
metalc
2.281
A
HEM
200
E
FE
HEM
1_555
A
HOH
309
F
O
HOH
1_555
OXYGEN STORAGE/TRANSPORT
OXYGEN STORAGE/TRANSPORT, OXYGEN STORAGE-TRANSPORT complex
MYG_PHYCA
UNP
1
1
P02185
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG
HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
1
153
1JP8
1
153
P02185
A
1
1
153
BINDING SITE FOR RESIDUE SO4 A 201
A
SO4
201
Software
6
BINDING SITE FOR RESIDUE SO4 A 202
A
SO4
202
Software
5
BINDING SITE FOR RESIDUE SO4 A 203
A
SO4
203
Software
3
BINDING SITE FOR RESIDUE HEM A 200
A
HEM
200
Software
12
A
LYS
34
A
LYS
34
6
1_555
A
THR
51
A
THR
51
6
1_555
A
GLU
52
A
GLU
52
6
1_555
A
HOH
312
F
HOH
6
1_554
A
HOH
317
F
HOH
6
1_555
A
HOH
320
F
HOH
6
1_555
A
ARG
45
A
ARG
45
5
1_555
A
LYS
63
A
LYS
63
5
1_555
A
HIS
64
A
HIS
64
5
1_555
A
THR
67
A
THR
67
5
1_555
A
HIS
116
A
HIS
116
5
1_565
A
HIS
119
A
HIS
119
3
1_555
A
PRO
120
A
PRO
120
3
1_555
A
GLY
121
A
GLY
121
3
1_555
A
LYS
42
A
LYS
42
12
1_555
A
PHE
43
A
PHE
43
12
1_555
A
ARG
45
A
ARG
45
12
1_555
A
VAL
68
A
VAL
68
12
1_555
A
LEU
89
A
LEU
89
12
1_555
A
SER
92
A
SER
92
12
1_555
A
HIS
93
A
HIS
93
12
1_555
A
HIS
97
A
HIS
97
12
1_555
A
ILE
99
A
ILE
99
12
1_555
A
TYR
103
A
TYR
103
12
1_555
A
HOH
309
F
HOH
12
1_555
A
HOH
310
F
HOH
12
1_555
4
P 1 21 1