0.010380 0.000000 0.000000 0.000000 0.010380 0.000000 0.000000 0.000000 0.014570 0.00000 0.00000 0.00000 Wright, C.S. Hester, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 96.339 96.339 68.635 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 4 1339 1352 10.1016/S0969-2126(96)00141-4 8939757 The 2.0 A structure of a cross-linked complex between snowdrop lectin and a branched mannopentaose: evidence for two unique binding modes. 1996 UK J.Mol.Biol. JMOBAK 0070 0022-2836 262 516 The Mannose-Specific Bulb Lectin from Galanthus Nivalis (Snowdrop) Binds Mono-and Dimannosides at Distinct Sites. Structure Analysis of Refined Complexes at 2.3 A and 3.0 A Resolution 1996 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 2 472 Structure of Mannose-Specific Snowdrop (Galanthus Nivalis) Lectin is Representative of a New Plant Lectin Family 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE 1995-07-07 RIGAKU M x-ray 1 1.5418 1.0 1.5418 FROM GALANTHUS NIVALIS PLANT FAMILY OF AMARYLLIDACEAE 12061.348 AGGLUTININ 1 nat polymer 504.438 alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose 2 man branched 342.297 alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose 1 man branched 18.015 water 55 nat water SNOWDROP LECTIN 6alpha-alpha-mannobiose no no DNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQ NGNYVCILQKDRNVVIYGTDRWATGTHTG DNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQ NGNYVCILQKDRNVVIYGTDRWATGTHTG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n common snowdrop THE SNOWDROP IS A REPRESENTATIVE OF THE PLANT FAMILY OF AMARYLLIDACEAE. THE PROTEIN IS ISOLATED FROM THE BULBS. Galanthus sample 4670 Galanthus nivalis 3.30 57. chem_comp pdbx_distant_solvent_atoms pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_struct_oper_list software struct_conn atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_special_symmetry struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Advisory Data collection Derived calculations Refinement description Atomic model Data collection Derived calculations Structure summary 1 0 1997-01-27 1 1 2008-03-03 1 2 2011-07-13 1 3 2020-02-05 2 0 2020-07-29 _chem_comp.type _pdbx_struct_assembly_prop.biol_id _software.name _struct_conn.pdbx_leaving_atom_flag _atom_site.auth_asym_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_entity_id _chem_comp.name _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_special_symmetry.label_asym_id MAN 1 n B MAN 1 MAN 2 n B MAN 2 MAN 3 n B MAN 3 MAN 11 n C MAN 1 MAN 12 n C MAN 2 MAN 21 n D MAN 1 MAN 22 n D MAN 2 MAN 23 n D MAN 3 DManpa a-D-mannopyranose a-D-Manp Man Y BNL 1996-07-30 REL 1 A O HOH 146 6.18 1 A O HOH 162 8.97 oligosaccharide oligosaccharide DManpa1-3[DManpa1-6]DManpa1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,3,2/[a1122h-1a_1-5]/1-1-1/a3-b1_a6-c1 2 PDB2Glycan 1.1.0 WURCS [][a-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}} 2 PDB-CARE LINUCS DManpa1-6DManpa1-ROH 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a6-b1 3 PDB2Glycan 1.1.0 WURCS [][a-D-Manp]{[(6+1)][a-D-Manp]{}} 3 PDB-CARE LINUCS C1 O3 MAN MAN 2 1 2 O1 HO3 sing C1 O6 MAN MAN 3 1 2 O1 HO6 sing C1 O6 MAN MAN 2 1 3 O1 HO6 sing n n n n n HOH water Metabolism oligosaccharide 6alpha-alpha-mannobiose Oligosaccharide HOH 1 4 HOH HOH 118 A HOH 2 4 HOH HOH 119 A HOH 3 4 HOH HOH 120 A HOH 4 4 HOH HOH 121 A HOH 5 4 HOH HOH 122 A HOH 6 4 HOH HOH 123 A HOH 7 4 HOH HOH 124 A HOH 8 4 HOH HOH 125 A HOH 9 4 HOH HOH 126 A HOH 10 4 HOH HOH 127 A HOH 11 4 HOH HOH 128 A HOH 12 4 HOH HOH 129 A HOH 13 4 HOH HOH 130 A HOH 14 4 HOH HOH 131 A HOH 15 4 HOH HOH 132 A HOH 16 4 HOH HOH 133 A HOH 17 4 HOH HOH 134 A HOH 18 4 HOH HOH 135 A HOH 19 4 HOH HOH 136 A HOH 20 4 HOH HOH 137 A HOH 21 4 HOH HOH 138 A HOH 22 4 HOH HOH 139 A HOH 23 4 HOH HOH 140 A HOH 24 4 HOH HOH 141 A HOH 25 4 HOH HOH 142 A HOH 26 4 HOH HOH 143 A HOH 27 4 HOH HOH 144 A HOH 28 4 HOH HOH 145 A HOH 29 4 HOH HOH 146 A HOH 30 4 HOH HOH 147 A HOH 31 4 HOH HOH 148 A HOH 32 4 HOH HOH 149 A HOH 33 4 HOH HOH 150 A HOH 34 4 HOH HOH 151 A HOH 35 4 HOH HOH 152 A HOH 36 4 HOH HOH 153 A HOH 37 4 HOH HOH 154 A HOH 38 4 HOH HOH 155 A HOH 39 4 HOH HOH 156 A HOH 40 4 HOH HOH 157 A HOH 41 4 HOH HOH 158 A HOH 42 4 HOH HOH 159 A HOH 43 4 HOH HOH 160 A HOH 44 4 HOH HOH 161 A HOH 45 4 HOH HOH 162 A HOH 46 4 HOH HOH 163 A HOH 47 4 HOH HOH 164 A HOH 48 4 HOH HOH 165 A HOH 49 4 HOH HOH 166 A HOH 50 4 HOH HOH 167 A HOH 51 4 HOH HOH 168 A HOH 52 4 HOH HOH 169 A HOH 53 4 HOH HOH 170 A HOH 54 4 HOH HOH 171 A HOH 55 4 HOH HOH 172 A ASP 1 n 1 ASP 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A LEU 4 n 4 LEU 4 A TYR 5 n 5 TYR 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A GLU 8 n 8 GLU 8 A THR 9 n 9 THR 9 A LEU 10 n 10 LEU 10 A SER 11 n 11 SER 11 A THR 12 n 12 THR 12 A GLY 13 n 13 GLY 13 A GLU 14 n 14 GLU 14 A PHE 15 n 15 PHE 15 A LEU 16 n 16 LEU 16 A ASN 17 n 17 ASN 17 A TYR 18 n 18 TYR 18 A GLY 19 n 19 GLY 19 A SER 20 n 20 SER 20 A PHE 21 n 21 PHE 21 A VAL 22 n 22 VAL 22 A PHE 23 n 23 PHE 23 A ILE 24 n 24 ILE 24 A MET 25 n 25 MET 25 A GLN 26 n 26 GLN 26 A GLU 27 n 27 GLU 27 A ASP 28 n 28 ASP 28 A CYS 29 n 29 CYS 29 A ASN 30 n 30 ASN 30 A LEU 31 n 31 LEU 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A TYR 34 n 34 TYR 34 A ASP 35 n 35 ASP 35 A VAL 36 n 36 VAL 36 A ASP 37 n 37 ASP 37 A LYS 38 n 38 LYS 38 A PRO 39 n 39 PRO 39 A ILE 40 n 40 ILE 40 A TRP 41 n 41 TRP 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A THR 45 n 45 THR 45 A GLY 46 n 46 GLY 46 A GLY 47 n 47 GLY 47 A LEU 48 n 48 LEU 48 A SER 49 n 49 SER 49 A ARG 50 n 50 ARG 50 A SER 51 n 51 SER 51 A CYS 52 n 52 CYS 52 A PHE 53 n 53 PHE 53 A LEU 54 n 54 LEU 54 A SER 55 n 55 SER 55 A MET 56 n 56 MET 56 A GLN 57 n 57 GLN 57 A THR 58 n 58 THR 58 A ASP 59 n 59 ASP 59 A GLY 60 n 60 GLY 60 A ASN 61 n 61 ASN 61 A LEU 62 n 62 LEU 62 A VAL 63 n 63 VAL 63 A VAL 64 n 64 VAL 64 A TYR 65 n 65 TYR 65 A ASN 66 n 66 ASN 66 A PRO 67 n 67 PRO 67 A SER 68 n 68 SER 68 A ASN 69 n 69 ASN 69 A LYS 70 n 70 LYS 70 A PRO 71 n 71 PRO 71 A ILE 72 n 72 ILE 72 A TRP 73 n 73 TRP 73 A ALA 74 n 74 ALA 74 A SER 75 n 75 SER 75 A ASN 76 n 76 ASN 76 A THR 77 n 77 THR 77 A GLY 78 n 78 GLY 78 A GLY 79 n 79 GLY 79 A GLN 80 n 80 GLN 80 A ASN 81 n 81 ASN 81 A GLY 82 n 82 GLY 82 A ASN 83 n 83 ASN 83 A TYR 84 n 84 TYR 84 A VAL 85 n 85 VAL 85 A CYS 86 n 86 CYS 86 A ILE 87 n 87 ILE 87 A LEU 88 n 88 LEU 88 A GLN 89 n 89 GLN 89 A LYS 90 n 90 LYS 90 A ASP 91 n 91 ASP 91 A ARG 92 n 92 ARG 92 A ASN 93 n 93 ASN 93 A VAL 94 n 94 VAL 94 A VAL 95 n 95 VAL 95 A ILE 96 n 96 ILE 96 A TYR 97 n 97 TYR 97 A GLY 98 n 98 GLY 98 A THR 99 n 99 THR 99 A ASP 100 n 100 ASP 100 A ARG 101 n 101 ARG 101 A TRP 102 n 102 TRP 102 A ALA 103 n 103 ALA 103 A THR 104 n 104 THR 104 A GLY 105 n 105 GLY 105 A THR 106 n 106 THR 106 A HIS 107 n 107 HIS 107 A THR 108 n 108 THR 108 A n 109 109 A author_and_software_defined_assembly PISA 4 tetrameric 14000 31 17620 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z crystal symmetry operation 96.3390000000 96.3390000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 10_665 -x+1,-y+1,z crystal symmetry operation 96.3390000000 96.3390000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 15_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 4 A O LEU 4 A N CYS 86 A N CYS 86 A O VAL 85 A O VAL 85 A N TYR 97 A N TYR 97 A O LEU 16 A O LEU 16 A N PHE 23 A N PHE 23 A O VAL 22 A O VAL 22 A N TYR 34 A N TYR 34 A O PHE 53 A O PHE 53 A N TYR 65 A N TYR 65 A O VAL 64 A O VAL 64 A N TRP 73 A N TRP 73 1 A HOH 132 E HOH 1 A GLY 109 A GLY 109 1 Y 1 A A OD2 O ASP HOH 1 142 2.15 1_555 8_665 1 A VAL 36 67.62 -114.29 1 A SER 49 -174.72 -176.34 33.5 0.22 0.187 0.187 2.0 8.0 11166 1 0. 0.25 2.0 8.0 55 989 91 0 843 0.006 1.43 25.36 1.118 1JPC 11166 0.0 0.074 1 4.9 99.7 data reduction MOSFLM 5.23 data scaling SCALA data reduction Agrovata model building X-PLOR 3.1 refinement X-PLOR 3.1 data scaling CCP4 (AGROVATA phasing X-PLOR 3.1 AGGLUTININ MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) BULBS IN COMPLEX WITH MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE 1 N N 2 N N 3 N N 2 N N 4 N N disulf 2.027 A CYS 29 A SG CYS 29 1_555 A CYS 52 A SG CYS 52 1_555 covale 1.395 both B MAN 1 B O3 MAN 1_555 B MAN 2 B C1 MAN 1_555 covale 1.459 both B MAN 1 B O6 MAN 1_555 B MAN 2 B C1 MAN 6_555 covale 1.459 both B MAN 1 B O6 MAN 6_555 B MAN 2 B C1 MAN 1_555 covale 1.400 both B MAN 1 B O6 MAN 1_555 B MAN 3 B C1 MAN 1_555 covale 1.434 both B MAN 1 B O3 MAN 1_555 B MAN 3 B C1 MAN 6_555 covale 1.434 both B MAN 1 B O3 MAN 6_555 B MAN 3 B C1 MAN 1_555 covale 1.402 both C MAN 1 C O6 MAN 1_555 C MAN 2 C C1 MAN 1_555 covale 1.396 both D MAN 1 D O3 MAN 1_555 D MAN 2 D C1 MAN 1_555 covale 1.400 both D MAN 1 D O6 MAN 1_555 D MAN 3 D C1 MAN 1_555 LECTIN LECTIN, AGGLUTININ, MANNOPENTAOSE, (MANNOSE-ALPHA1, 6-(MANNOSE-ALPHA1, 3-MANNOSE- ALPHA1, 3)-MANNOSE), SNOWDROP A GLY 98 A GLY 98 1 A THR 99 A THR 99 -0.33 LEC_GALNI UNP 1 1 P30617 MAKASLLILAAIFLGVITPSCLSDNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQ TDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTDRWATGTHTGLVGIPASPPSEKYPTAGKIKLVTAK 24 132 1JPC 1 109 P30617 A 1 1 109 3 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 3 A ILE 3 A TYR 5 A TYR 5 A VAL 85 A VAL 85 A LEU 88 A LEU 88 A VAL 94 A VAL 94 A TYR 97 A TYR 97 A PHE 15 A PHE 15 A TYR 18 A TYR 18 A PHE 21 A PHE 21 A MET 25 A MET 25 A LEU 31 A LEU 31 A ASP 35 A ASP 35 A PHE 53 A PHE 53 A SER 55 A SER 55 A VAL 63 A VAL 63 A TYR 65 A TYR 65 A PRO 71 A PRO 71 A ALA 74 A ALA 74 98 I 41 2 2