0.010380
0.000000
0.000000
0.000000
0.010380
0.000000
0.000000
0.000000
0.014570
0.00000
0.00000
0.00000
Wright, C.S.
Hester, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
96.339
96.339
68.635
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
4
1339
1352
10.1016/S0969-2126(96)00141-4
8939757
The 2.0 A structure of a cross-linked complex between snowdrop lectin and a branched mannopentaose: evidence for two unique binding modes.
1996
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
262
516
The Mannose-Specific Bulb Lectin from Galanthus Nivalis (Snowdrop) Binds Mono-and Dimannosides at Distinct Sites. Structure Analysis of Refined Complexes at 2.3 A and 3.0 A Resolution
1996
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
472
Structure of Mannose-Specific Snowdrop (Galanthus Nivalis) Lectin is Representative of a New Plant Lectin Family
1995
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1995-07-07
RIGAKU
M
x-ray
1
1.5418
1.0
1.5418
FROM GALANTHUS NIVALIS PLANT FAMILY OF AMARYLLIDACEAE
12061.348
AGGLUTININ
1
nat
polymer
504.438
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose
2
man
branched
342.297
alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose
1
man
branched
18.015
water
55
nat
water
SNOWDROP LECTIN
6alpha-alpha-mannobiose
no
no
DNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQ
NGNYVCILQKDRNVVIYGTDRWATGTHTG
DNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQ
NGNYVCILQKDRNVVIYGTDRWATGTHTG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
common snowdrop
THE SNOWDROP IS A REPRESENTATIVE OF THE PLANT FAMILY OF AMARYLLIDACEAE. THE PROTEIN IS ISOLATED FROM THE BULBS.
Galanthus
sample
4670
Galanthus nivalis
3.30
57.
chem_comp
pdbx_distant_solvent_atoms
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
pdbx_struct_oper_list
software
struct_conn
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Advisory
Data collection
Derived calculations
Refinement description
Atomic model
Data collection
Derived calculations
Structure summary
1
0
1997-01-27
1
1
2008-03-03
1
2
2011-07-13
1
3
2020-02-05
2
0
2020-07-29
_chem_comp.type
_pdbx_struct_assembly_prop.biol_id
_software.name
_struct_conn.pdbx_leaving_atom_flag
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
MAN
1
n
B
MAN
1
MAN
2
n
B
MAN
2
MAN
3
n
B
MAN
3
MAN
11
n
C
MAN
1
MAN
12
n
C
MAN
2
MAN
21
n
D
MAN
1
MAN
22
n
D
MAN
2
MAN
23
n
D
MAN
3
DManpa
a-D-mannopyranose
a-D-Manp
Man
Y
BNL
1996-07-30
REL
1
A
O
HOH
146
6.18
1
A
O
HOH
162
8.97
oligosaccharide
oligosaccharide
DManpa1-3[DManpa1-6]DManpa1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,3,2/[a1122h-1a_1-5]/1-1-1/a3-b1_a6-c1
2
PDB2Glycan
1.1.0
WURCS
[][a-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}
2
PDB-CARE
LINUCS
DManpa1-6DManpa1-ROH
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a6-b1
3
PDB2Glycan
1.1.0
WURCS
[][a-D-Manp]{[(6+1)][a-D-Manp]{}}
3
PDB-CARE
LINUCS
C1
O3
MAN
MAN
2
1
2
O1
HO3
sing
C1
O6
MAN
MAN
3
1
2
O1
HO6
sing
C1
O6
MAN
MAN
2
1
3
O1
HO6
sing
n
n
n
n
n
HOH
water
Metabolism
oligosaccharide
6alpha-alpha-mannobiose
Oligosaccharide
HOH
1
4
HOH
HOH
118
A
HOH
2
4
HOH
HOH
119
A
HOH
3
4
HOH
HOH
120
A
HOH
4
4
HOH
HOH
121
A
HOH
5
4
HOH
HOH
122
A
HOH
6
4
HOH
HOH
123
A
HOH
7
4
HOH
HOH
124
A
HOH
8
4
HOH
HOH
125
A
HOH
9
4
HOH
HOH
126
A
HOH
10
4
HOH
HOH
127
A
HOH
11
4
HOH
HOH
128
A
HOH
12
4
HOH
HOH
129
A
HOH
13
4
HOH
HOH
130
A
HOH
14
4
HOH
HOH
131
A
HOH
15
4
HOH
HOH
132
A
HOH
16
4
HOH
HOH
133
A
HOH
17
4
HOH
HOH
134
A
HOH
18
4
HOH
HOH
135
A
HOH
19
4
HOH
HOH
136
A
HOH
20
4
HOH
HOH
137
A
HOH
21
4
HOH
HOH
138
A
HOH
22
4
HOH
HOH
139
A
HOH
23
4
HOH
HOH
140
A
HOH
24
4
HOH
HOH
141
A
HOH
25
4
HOH
HOH
142
A
HOH
26
4
HOH
HOH
143
A
HOH
27
4
HOH
HOH
144
A
HOH
28
4
HOH
HOH
145
A
HOH
29
4
HOH
HOH
146
A
HOH
30
4
HOH
HOH
147
A
HOH
31
4
HOH
HOH
148
A
HOH
32
4
HOH
HOH
149
A
HOH
33
4
HOH
HOH
150
A
HOH
34
4
HOH
HOH
151
A
HOH
35
4
HOH
HOH
152
A
HOH
36
4
HOH
HOH
153
A
HOH
37
4
HOH
HOH
154
A
HOH
38
4
HOH
HOH
155
A
HOH
39
4
HOH
HOH
156
A
HOH
40
4
HOH
HOH
157
A
HOH
41
4
HOH
HOH
158
A
HOH
42
4
HOH
HOH
159
A
HOH
43
4
HOH
HOH
160
A
HOH
44
4
HOH
HOH
161
A
HOH
45
4
HOH
HOH
162
A
HOH
46
4
HOH
HOH
163
A
HOH
47
4
HOH
HOH
164
A
HOH
48
4
HOH
HOH
165
A
HOH
49
4
HOH
HOH
166
A
HOH
50
4
HOH
HOH
167
A
HOH
51
4
HOH
HOH
168
A
HOH
52
4
HOH
HOH
169
A
HOH
53
4
HOH
HOH
170
A
HOH
54
4
HOH
HOH
171
A
HOH
55
4
HOH
HOH
172
A
ASP
1
n
1
ASP
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
LEU
4
n
4
LEU
4
A
TYR
5
n
5
TYR
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
GLU
8
n
8
GLU
8
A
THR
9
n
9
THR
9
A
LEU
10
n
10
LEU
10
A
SER
11
n
11
SER
11
A
THR
12
n
12
THR
12
A
GLY
13
n
13
GLY
13
A
GLU
14
n
14
GLU
14
A
PHE
15
n
15
PHE
15
A
LEU
16
n
16
LEU
16
A
ASN
17
n
17
ASN
17
A
TYR
18
n
18
TYR
18
A
GLY
19
n
19
GLY
19
A
SER
20
n
20
SER
20
A
PHE
21
n
21
PHE
21
A
VAL
22
n
22
VAL
22
A
PHE
23
n
23
PHE
23
A
ILE
24
n
24
ILE
24
A
MET
25
n
25
MET
25
A
GLN
26
n
26
GLN
26
A
GLU
27
n
27
GLU
27
A
ASP
28
n
28
ASP
28
A
CYS
29
n
29
CYS
29
A
ASN
30
n
30
ASN
30
A
LEU
31
n
31
LEU
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
TYR
34
n
34
TYR
34
A
ASP
35
n
35
ASP
35
A
VAL
36
n
36
VAL
36
A
ASP
37
n
37
ASP
37
A
LYS
38
n
38
LYS
38
A
PRO
39
n
39
PRO
39
A
ILE
40
n
40
ILE
40
A
TRP
41
n
41
TRP
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
THR
45
n
45
THR
45
A
GLY
46
n
46
GLY
46
A
GLY
47
n
47
GLY
47
A
LEU
48
n
48
LEU
48
A
SER
49
n
49
SER
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
CYS
52
n
52
CYS
52
A
PHE
53
n
53
PHE
53
A
LEU
54
n
54
LEU
54
A
SER
55
n
55
SER
55
A
MET
56
n
56
MET
56
A
GLN
57
n
57
GLN
57
A
THR
58
n
58
THR
58
A
ASP
59
n
59
ASP
59
A
GLY
60
n
60
GLY
60
A
ASN
61
n
61
ASN
61
A
LEU
62
n
62
LEU
62
A
VAL
63
n
63
VAL
63
A
VAL
64
n
64
VAL
64
A
TYR
65
n
65
TYR
65
A
ASN
66
n
66
ASN
66
A
PRO
67
n
67
PRO
67
A
SER
68
n
68
SER
68
A
ASN
69
n
69
ASN
69
A
LYS
70
n
70
LYS
70
A
PRO
71
n
71
PRO
71
A
ILE
72
n
72
ILE
72
A
TRP
73
n
73
TRP
73
A
ALA
74
n
74
ALA
74
A
SER
75
n
75
SER
75
A
ASN
76
n
76
ASN
76
A
THR
77
n
77
THR
77
A
GLY
78
n
78
GLY
78
A
GLY
79
n
79
GLY
79
A
GLN
80
n
80
GLN
80
A
ASN
81
n
81
ASN
81
A
GLY
82
n
82
GLY
82
A
ASN
83
n
83
ASN
83
A
TYR
84
n
84
TYR
84
A
VAL
85
n
85
VAL
85
A
CYS
86
n
86
CYS
86
A
ILE
87
n
87
ILE
87
A
LEU
88
n
88
LEU
88
A
GLN
89
n
89
GLN
89
A
LYS
90
n
90
LYS
90
A
ASP
91
n
91
ASP
91
A
ARG
92
n
92
ARG
92
A
ASN
93
n
93
ASN
93
A
VAL
94
n
94
VAL
94
A
VAL
95
n
95
VAL
95
A
ILE
96
n
96
ILE
96
A
TYR
97
n
97
TYR
97
A
GLY
98
n
98
GLY
98
A
THR
99
n
99
THR
99
A
ASP
100
n
100
ASP
100
A
ARG
101
n
101
ARG
101
A
TRP
102
n
102
TRP
102
A
ALA
103
n
103
ALA
103
A
THR
104
n
104
THR
104
A
GLY
105
n
105
GLY
105
A
THR
106
n
106
THR
106
A
HIS
107
n
107
HIS
107
A
THR
108
n
108
THR
108
A
n
109
109
A
author_and_software_defined_assembly
PISA
4
tetrameric
14000
31
17620
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z
crystal symmetry operation
96.3390000000
96.3390000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
10_665
-x+1,-y+1,z
crystal symmetry operation
96.3390000000
96.3390000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
4
A
O
LEU
4
A
N
CYS
86
A
N
CYS
86
A
O
VAL
85
A
O
VAL
85
A
N
TYR
97
A
N
TYR
97
A
O
LEU
16
A
O
LEU
16
A
N
PHE
23
A
N
PHE
23
A
O
VAL
22
A
O
VAL
22
A
N
TYR
34
A
N
TYR
34
A
O
PHE
53
A
O
PHE
53
A
N
TYR
65
A
N
TYR
65
A
O
VAL
64
A
O
VAL
64
A
N
TRP
73
A
N
TRP
73
1
A
HOH
132
E
HOH
1
A
GLY
109
A
GLY
109
1
Y
1
A
A
OD2
O
ASP
HOH
1
142
2.15
1_555
8_665
1
A
VAL
36
67.62
-114.29
1
A
SER
49
-174.72
-176.34
33.5
0.22
0.187
0.187
2.0
8.0
11166
1
0.
0.25
2.0
8.0
55
989
91
0
843
0.006
1.43
25.36
1.118
1JPC
11166
0.0
0.074
1
4.9
99.7
data reduction
MOSFLM
5.23
data scaling
SCALA
data reduction
Agrovata
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data scaling
CCP4
(AGROVATA
phasing
X-PLOR
3.1
AGGLUTININ
MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) BULBS IN COMPLEX WITH MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
disulf
2.027
A
CYS
29
A
SG
CYS
29
1_555
A
CYS
52
A
SG
CYS
52
1_555
covale
1.395
both
B
MAN
1
B
O3
MAN
1_555
B
MAN
2
B
C1
MAN
1_555
covale
1.459
both
B
MAN
1
B
O6
MAN
1_555
B
MAN
2
B
C1
MAN
6_555
covale
1.459
both
B
MAN
1
B
O6
MAN
6_555
B
MAN
2
B
C1
MAN
1_555
covale
1.400
both
B
MAN
1
B
O6
MAN
1_555
B
MAN
3
B
C1
MAN
1_555
covale
1.434
both
B
MAN
1
B
O3
MAN
1_555
B
MAN
3
B
C1
MAN
6_555
covale
1.434
both
B
MAN
1
B
O3
MAN
6_555
B
MAN
3
B
C1
MAN
1_555
covale
1.402
both
C
MAN
1
C
O6
MAN
1_555
C
MAN
2
C
C1
MAN
1_555
covale
1.396
both
D
MAN
1
D
O3
MAN
1_555
D
MAN
2
D
C1
MAN
1_555
covale
1.400
both
D
MAN
1
D
O6
MAN
1_555
D
MAN
3
D
C1
MAN
1_555
LECTIN
LECTIN, AGGLUTININ, MANNOPENTAOSE, (MANNOSE-ALPHA1, 6-(MANNOSE-ALPHA1, 3-MANNOSE- ALPHA1, 3)-MANNOSE), SNOWDROP
A
GLY
98
A
GLY
98
1
A
THR
99
A
THR
99
-0.33
LEC_GALNI
UNP
1
1
P30617
MAKASLLILAAIFLGVITPSCLSDNILYSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQ
TDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTDRWATGTHTGLVGIPASPPSEKYPTAGKIKLVTAK
24
132
1JPC
1
109
P30617
A
1
1
109
3
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
3
A
ILE
3
A
TYR
5
A
TYR
5
A
VAL
85
A
VAL
85
A
LEU
88
A
LEU
88
A
VAL
94
A
VAL
94
A
TYR
97
A
TYR
97
A
PHE
15
A
PHE
15
A
TYR
18
A
TYR
18
A
PHE
21
A
PHE
21
A
MET
25
A
MET
25
A
LEU
31
A
LEU
31
A
ASP
35
A
ASP
35
A
PHE
53
A
PHE
53
A
SER
55
A
SER
55
A
VAL
63
A
VAL
63
A
TYR
65
A
TYR
65
A
PRO
71
A
PRO
71
A
ALA
74
A
ALA
74
98
I 41 2 2