0.018839 0.000000 0.000000 0.000000 0.018314 0.000000 0.000000 0.000000 0.009758 0.00000 0.00000 0.00000 Haebel, P.W. Goldstone, D. Metcalf, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 53.082 54.603 102.478 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Embo J. EMJODG 0897 0261-4189 21 4774 4784 10.1093/emboj/cdf489 12234918 The disulfide bond isomerase DsbC is activated by an immunoglobulin-fold thiol oxidoreductase: crystal structure of the DsbC-DsbD alpha complex. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-02-19 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9793 1.0 BL9-2 SSRL 0.9793 SYNCHROTRON SSRL BEAMLINE BL9-2 17091.906 DsbD-alpha DsbD-alpha 1 man polymer 18.015 water 87 nat water no no MRGSHHHHHHGSENLYFQSGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLP QGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAAPQPV MRGSHHHHHHGSENLYFQSGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLP QGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAAPQPV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli Dh5alpha (Z1) cells 562 Escherichia coli pFK115 1 2.17 43.34 repository Initial release Version format compliance Version format compliance 1 0 2002-09-25 1 1 2008-04-27 1 2 2011-07-13 RCSB Y RCSB 2001-08-02 REL REL HOH water WAT 1 2 HOH HOH 133 A WAT 3 2 HOH HOH 134 A WAT 4 2 HOH HOH 135 A WAT 5 2 HOH HOH 136 A WAT 6 2 HOH HOH 137 A WAT 7 2 HOH HOH 138 A WAT 8 2 HOH HOH 139 A WAT 9 2 HOH HOH 140 A WAT 10 2 HOH HOH 141 A WAT 11 2 HOH HOH 142 A WAT 12 2 HOH HOH 143 A WAT 13 2 HOH HOH 144 A WAT 14 2 HOH HOH 145 A WAT 15 2 HOH HOH 146 A WAT 16 2 HOH HOH 147 A WAT 17 2 HOH HOH 148 A WAT 18 2 HOH HOH 149 A WAT 19 2 HOH HOH 150 A WAT 20 2 HOH HOH 151 A WAT 21 2 HOH HOH 152 A WAT 22 2 HOH HOH 153 A WAT 23 2 HOH HOH 154 A WAT 24 2 HOH HOH 155 A WAT 25 2 HOH HOH 156 A WAT 26 2 HOH HOH 157 A WAT 27 2 HOH HOH 158 A WAT 28 2 HOH HOH 159 A WAT 29 2 HOH HOH 160 A WAT 30 2 HOH HOH 161 A WAT 31 2 HOH HOH 162 A WAT 32 2 HOH HOH 163 A WAT 33 2 HOH HOH 164 A WAT 34 2 HOH HOH 165 A WAT 35 2 HOH HOH 166 A WAT 36 2 HOH HOH 167 A WAT 37 2 HOH HOH 168 A WAT 39 2 HOH HOH 169 A WAT 40 2 HOH HOH 170 A WAT 42 2 HOH HOH 171 A WAT 43 2 HOH HOH 172 A WAT 44 2 HOH HOH 173 A WAT 45 2 HOH HOH 174 A WAT 47 2 HOH HOH 175 A WAT 48 2 HOH HOH 176 A WAT 49 2 HOH HOH 177 A WAT 50 2 HOH HOH 178 A WAT 51 2 HOH HOH 179 A WAT 52 2 HOH HOH 180 A WAT 54 2 HOH HOH 181 A WAT 55 2 HOH HOH 182 A WAT 56 2 HOH HOH 183 A WAT 57 2 HOH HOH 184 A WAT 58 2 HOH HOH 185 A WAT 59 2 HOH HOH 186 A WAT 60 2 HOH HOH 187 A WAT 62 2 HOH HOH 188 A WAT 63 2 HOH HOH 189 A WAT 64 2 HOH HOH 190 A WAT 65 2 HOH HOH 191 A WAT 66 2 HOH HOH 192 A WAT 68 2 HOH HOH 193 A WAT 69 2 HOH HOH 194 A WAT 70 2 HOH HOH 195 A WAT 71 2 HOH HOH 196 A WAT 73 2 HOH HOH 197 A WAT 74 2 HOH HOH 198 A WAT 75 2 HOH HOH 199 A WAT 76 2 HOH HOH 200 A WAT 77 2 HOH HOH 201 A WAT 78 2 HOH HOH 202 A WAT 80 2 HOH HOH 203 A WAT 81 2 HOH HOH 204 A WAT 82 2 HOH HOH 205 A WAT 89 2 HOH HOH 206 A WAT 95 2 HOH HOH 207 A WAT 97 2 HOH HOH 208 A WAT 98 2 HOH HOH 209 A WAT 99 2 HOH HOH 210 A WAT 100 2 HOH HOH 211 A WAT 101 2 HOH HOH 212 A WAT 103 2 HOH HOH 213 A WAT 104 2 HOH HOH 214 A WAT 105 2 HOH HOH 215 A WAT 106 2 HOH HOH 216 A WAT 107 2 HOH HOH 217 A WAT 108 2 HOH HOH 218 A WAT 109 2 HOH HOH 219 A n 1 -18 A n 2 -17 A n 3 -16 A n 4 -15 A n 5 -14 A n 6 -13 A n 7 -12 A n 8 -11 A n 9 -10 A n 10 -9 A n 11 -8 A n 12 -7 A n 13 -6 A n 14 -5 A n 15 -4 A n 16 -3 A n 17 -2 A n 18 -1 A n 19 0 A n 20 1 A n 21 2 A n 22 3 A n 23 4 A n 24 5 A n 25 6 A n 26 7 A n 27 8 A n 28 9 A GLN 10 n 29 GLN 10 A PHE 11 n 30 PHE 11 A VAL 12 n 31 VAL 12 A PRO 13 n 32 PRO 13 A ALA 14 n 33 ALA 14 A ASP 15 n 34 ASP 15 A GLN 16 n 35 GLN 16 A ALA 17 n 36 ALA 17 A PHE 18 n 37 PHE 18 A ALA 19 n 38 ALA 19 A PHE 20 n 39 PHE 20 A ASP 21 n 40 ASP 21 A PHE 22 n 41 PHE 22 A GLN 23 n 42 GLN 23 A GLN 24 n 43 GLN 24 A ASN 25 n 44 ASN 25 A GLN 26 n 45 GLN 26 A HIS 27 n 46 HIS 27 A ASP 28 n 47 ASP 28 A LEU 29 n 48 LEU 29 A ASN 30 n 49 ASN 30 A LEU 31 n 50 LEU 31 A THR 32 n 51 THR 32 A TRP 33 n 52 TRP 33 A GLN 34 n 53 GLN 34 A ILE 35 n 54 ILE 35 A LYS 36 n 55 LYS 36 A ASP 37 n 56 ASP 37 A GLY 38 n 57 GLY 38 A TYR 39 n 58 TYR 39 A TYR 40 n 59 TYR 40 A LEU 41 n 60 LEU 41 A TYR 42 n 61 TYR 42 A ARG 43 n 62 ARG 43 A LYS 44 n 63 LYS 44 A GLN 45 n 64 GLN 45 A ILE 46 n 65 ILE 46 A ARG 47 n 66 ARG 47 A ILE 48 n 67 ILE 48 A THR 49 n 68 THR 49 A PRO 50 n 69 PRO 50 A GLU 51 n 70 GLU 51 A HIS 52 n 71 HIS 52 A ALA 53 n 72 ALA 53 A LYS 54 n 73 LYS 54 A ILE 55 n 74 ILE 55 A ALA 56 n 75 ALA 56 A ASP 57 n 76 ASP 57 A VAL 58 n 77 VAL 58 A GLN 59 n 78 GLN 59 A LEU 60 n 79 LEU 60 A PRO 61 n 80 PRO 61 A GLN 62 n 81 GLN 62 A GLY 63 n 82 GLY 63 A VAL 64 n 83 VAL 64 A TRP 65 n 84 TRP 65 A HIS 66 n 85 HIS 66 A GLU 67 n 86 GLU 67 A ASP 68 n 87 ASP 68 A GLU 69 n 88 GLU 69 A PHE 70 n 89 PHE 70 A TYR 71 n 90 TYR 71 A GLY 72 n 91 GLY 72 A LYS 73 n 92 LYS 73 A SER 74 n 93 SER 74 A GLU 75 n 94 GLU 75 A ILE 76 n 95 ILE 76 A TYR 77 n 96 TYR 77 A ARG 78 n 97 ARG 78 A ASP 79 n 98 ASP 79 A ARG 80 n 99 ARG 80 A LEU 81 n 100 LEU 81 A THR 82 n 101 THR 82 A LEU 83 n 102 LEU 83 A PRO 84 n 103 PRO 84 A VAL 85 n 104 VAL 85 A THR 86 n 105 THR 86 A ILE 87 n 106 ILE 87 A ASN 88 n 107 ASN 88 A GLN 89 n 108 GLN 89 A ALA 90 n 109 ALA 90 A SER 91 n 110 SER 91 A ALA 92 n 111 ALA 92 A GLY 93 n 112 GLY 93 A ALA 94 n 113 ALA 94 A THR 95 n 114 THR 95 A LEU 96 n 115 LEU 96 A THR 97 n 116 THR 97 A VAL 98 n 117 VAL 98 A THR 99 n 118 THR 99 A TYR 100 n 119 TYR 100 A GLN 101 n 120 GLN 101 A GLY 102 n 121 GLY 102 A CYS 103 n 122 CYS 103 A ALA 104 n 123 ALA 104 A ASP 105 n 124 ASP 105 A ALA 106 n 125 ALA 106 A GLY 107 n 126 GLY 107 A PHE 108 n 127 PHE 108 A CYS 109 n 128 CYS 109 A TYR 110 n 129 TYR 110 A PRO 111 n 130 PRO 111 A PRO 112 n 131 PRO 112 A GLU 113 n 132 GLU 113 A THR 114 n 133 THR 114 A LYS 115 n 134 LYS 115 A THR 116 n 135 THR 116 A VAL 117 n 136 VAL 117 A PRO 118 n 137 PRO 118 A LEU 119 n 138 LEU 119 A SER 120 n 139 SER 120 A GLU 121 n 140 GLU 121 A VAL 122 n 141 VAL 122 A VAL 123 n 142 VAL 123 A ALA 124 n 143 ALA 124 A ASN 125 n 144 ASN 125 A n 145 126 A n 146 127 A n 147 128 A n 148 129 A n 149 130 A n 150 131 A n 151 132 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 49 A N THR 68 A O THR 97 A O THR 116 A O ASP 28 A O ASP 47 A N ASN 25 A N ASN 44 A N THR 49 A N THR 68 A O THR 97 A O THR 116 A N VAL 64 A N VAL 83 A O ILE 76 A O ILE 95 A O TYR 77 A O TYR 96 A N LEU 41 A N LEU 60 A N TYR 40 A N TYR 59 A O CYS 103 A O CYS 122 A N ALA 104 A N ALA 123 A O PHE 108 A O PHE 127 1 A MET -18 A MET 1 1 Y 1 A ARG -17 A ARG 2 1 Y 1 A GLY -16 A GLY 3 1 Y 1 A SER -15 A SER 4 1 Y 1 A HIS -14 A HIS 5 1 Y 1 A HIS -13 A HIS 6 1 Y 1 A HIS -12 A HIS 7 1 Y 1 A HIS -11 A HIS 8 1 Y 1 A HIS -10 A HIS 9 1 Y 1 A HIS -9 A HIS 10 1 Y 1 A GLY -8 A GLY 11 1 Y 1 A SER -7 A SER 12 1 Y 1 A GLU -6 A GLU 13 1 Y 1 A ASN -5 A ASN 14 1 Y 1 A LEU -4 A LEU 15 1 Y 1 A TYR -3 A TYR 16 1 Y 1 A PHE -2 A PHE 17 1 Y 1 A GLN -1 A GLN 18 1 Y 1 A SER 0 A SER 19 1 Y 1 A GLY 1 A GLY 20 1 Y 1 A LEU 2 A LEU 21 1 Y 1 A PHE 3 A PHE 22 1 Y 1 A ASP 4 A ASP 23 1 Y 1 A ALA 5 A ALA 24 1 Y 1 A PRO 6 A PRO 25 1 Y 1 A GLY 7 A GLY 26 1 Y 1 A ARG 8 A ARG 27 1 Y 1 A SER 9 A SER 28 1 Y 1 A ASN 126 A ASN 145 1 Y 1 A ALA 127 A ALA 146 1 Y 1 A ALA 128 A ALA 147 1 Y 1 A PRO 129 A PRO 148 1 Y 1 A GLN 130 A GLN 149 1 Y 1 A PRO 131 A PRO 150 1 Y 1 A VAL 132 A VAL 151 1 Y 1 A GLN 26 60.72 -119.62 1 A ASP 79 68.77 -58.88 1 A ALA 124 -48.58 171.72 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 30.3 -6.81 0.00 0.00 13.10 0.00 -6.29 0.254 0.007 0.216 0.239 0.221 1.90 30.55 1192 11998 11540 10.3 95.5 RANDOM 457274.18 457274.18 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 41.8671 0.382323 0.30 0.24 5.00 0.15 0.16 1.90 30.55 87 87 0 0 0 0.006 1.3 26.6 0.79 0.243 0.019 0.244 2.02 166 1503 6 9.9 84.7 15.1 1.89 30.55 1JPE 11998 11606 0 5 1 95.6 1.89 1.97 89.6 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 DsbD-alpha Crystal structure of DsbD-alpha; the N-terminal domain of DsbD 1 N N 2 N N A PRO 13 A PRO 32 HELX_P A ALA 17 A ALA 36 1 1 5 A LYS 44 A LYS 63 HELX_P A ILE 46 A ILE 65 5 2 3 disulf 2.038 A CYS 103 A SG CYS 122 1_555 A CYS 109 A SG CYS 128 1_555 ELECTRON TRANSPORT Redox-active center, electron transport, inner membrane, Disulfide bond formation DSBD_ECOLI UNP 1 19 P36655 AGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRD RLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAAPQPV 19 151 1JPE 0 132 P36655 A 1 19 151 1 EXPRESSION TAG MET -18 1JPE A P36655 UNP 1 1 EXPRESSION TAG ARG -17 1JPE A P36655 UNP 2 1 EXPRESSION TAG GLY -16 1JPE A P36655 UNP 3 1 EXPRESSION TAG SER -15 1JPE A P36655 UNP 4 1 EXPRESSION TAG HIS -14 1JPE A P36655 UNP 5 1 EXPRESSION TAG HIS -13 1JPE A P36655 UNP 6 1 EXPRESSION TAG HIS -12 1JPE A P36655 UNP 7 1 EXPRESSION TAG HIS -11 1JPE A P36655 UNP 8 1 EXPRESSION TAG HIS -10 1JPE A P36655 UNP 9 1 EXPRESSION TAG HIS -9 1JPE A P36655 UNP 10 1 EXPRESSION TAG GLY -8 1JPE A P36655 UNP 11 1 EXPRESSION TAG SER -7 1JPE A P36655 UNP 12 1 EXPRESSION TAG GLU -6 1JPE A P36655 UNP 13 1 EXPRESSION TAG ASN -5 1JPE A P36655 UNP 14 1 EXPRESSION TAG LEU -4 1JPE A P36655 UNP 15 1 EXPRESSION TAG TYR -3 1JPE A P36655 UNP 16 1 EXPRESSION TAG PHE -2 1JPE A P36655 UNP 17 1 EXPRESSION TAG GLN -1 1JPE A P36655 UNP 18 1 ALA CONFLICT SER 0 1JPE A P36655 UNP 19 19 4 3 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 47 A ARG 66 A ILE 55 A ILE 74 A ARG 80 A ARG 99 A TYR 100 A TYR 119 A ASP 28 A ASP 47 A ILE 35 A ILE 54 A PHE 18 A PHE 37 A ASN 25 A ASN 44 A ARG 47 A ARG 66 A ILE 55 A ILE 74 A ARG 80 A ARG 99 A TYR 100 A TYR 119 A GLU 113 A GLU 132 A PRO 118 A PRO 137 A VAL 64 A VAL 83 A ASP 68 A ASP 87 A GLY 72 A GLY 91 A TYR 77 A TYR 96 A TYR 39 A TYR 58 A TYR 42 A TYR 61 A GLY 102 A GLY 121 A ALA 104 A ALA 123 A PHE 108 A PHE 127 A CYS 109 A CYS 128 20 C 2 2 21