0.018839
0.000000
0.000000
0.000000
0.018314
0.000000
0.000000
0.000000
0.009758
0.00000
0.00000
0.00000
Haebel, P.W.
Goldstone, D.
Metcalf, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
53.082
54.603
102.478
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Embo J.
EMJODG
0897
0261-4189
21
4774
4784
10.1093/emboj/cdf489
12234918
The disulfide bond isomerase DsbC is activated by an
immunoglobulin-fold thiol oxidoreductase: crystal structure of the
DsbC-DsbD alpha complex.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-02-19
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9793
1.0
BL9-2
SSRL
0.9793
SYNCHROTRON
SSRL BEAMLINE BL9-2
17091.906
DsbD-alpha
DsbD-alpha
1
man
polymer
18.015
water
87
nat
water
no
no
MRGSHHHHHHGSENLYFQSGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLP
QGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAAPQPV
MRGSHHHHHHGSENLYFQSGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLP
QGVWHEDEFYGKSEIYRDRLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAAPQPV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
Dh5alpha (Z1) cells
562
Escherichia coli
pFK115
1
2.17
43.34
repository
Initial release
Version format compliance
Version format compliance
1
0
2002-09-25
1
1
2008-04-27
1
2
2011-07-13
RCSB
Y
RCSB
2001-08-02
REL
REL
HOH
water
WAT
1
2
HOH
HOH
133
A
WAT
3
2
HOH
HOH
134
A
WAT
4
2
HOH
HOH
135
A
WAT
5
2
HOH
HOH
136
A
WAT
6
2
HOH
HOH
137
A
WAT
7
2
HOH
HOH
138
A
WAT
8
2
HOH
HOH
139
A
WAT
9
2
HOH
HOH
140
A
WAT
10
2
HOH
HOH
141
A
WAT
11
2
HOH
HOH
142
A
WAT
12
2
HOH
HOH
143
A
WAT
13
2
HOH
HOH
144
A
WAT
14
2
HOH
HOH
145
A
WAT
15
2
HOH
HOH
146
A
WAT
16
2
HOH
HOH
147
A
WAT
17
2
HOH
HOH
148
A
WAT
18
2
HOH
HOH
149
A
WAT
19
2
HOH
HOH
150
A
WAT
20
2
HOH
HOH
151
A
WAT
21
2
HOH
HOH
152
A
WAT
22
2
HOH
HOH
153
A
WAT
23
2
HOH
HOH
154
A
WAT
24
2
HOH
HOH
155
A
WAT
25
2
HOH
HOH
156
A
WAT
26
2
HOH
HOH
157
A
WAT
27
2
HOH
HOH
158
A
WAT
28
2
HOH
HOH
159
A
WAT
29
2
HOH
HOH
160
A
WAT
30
2
HOH
HOH
161
A
WAT
31
2
HOH
HOH
162
A
WAT
32
2
HOH
HOH
163
A
WAT
33
2
HOH
HOH
164
A
WAT
34
2
HOH
HOH
165
A
WAT
35
2
HOH
HOH
166
A
WAT
36
2
HOH
HOH
167
A
WAT
37
2
HOH
HOH
168
A
WAT
39
2
HOH
HOH
169
A
WAT
40
2
HOH
HOH
170
A
WAT
42
2
HOH
HOH
171
A
WAT
43
2
HOH
HOH
172
A
WAT
44
2
HOH
HOH
173
A
WAT
45
2
HOH
HOH
174
A
WAT
47
2
HOH
HOH
175
A
WAT
48
2
HOH
HOH
176
A
WAT
49
2
HOH
HOH
177
A
WAT
50
2
HOH
HOH
178
A
WAT
51
2
HOH
HOH
179
A
WAT
52
2
HOH
HOH
180
A
WAT
54
2
HOH
HOH
181
A
WAT
55
2
HOH
HOH
182
A
WAT
56
2
HOH
HOH
183
A
WAT
57
2
HOH
HOH
184
A
WAT
58
2
HOH
HOH
185
A
WAT
59
2
HOH
HOH
186
A
WAT
60
2
HOH
HOH
187
A
WAT
62
2
HOH
HOH
188
A
WAT
63
2
HOH
HOH
189
A
WAT
64
2
HOH
HOH
190
A
WAT
65
2
HOH
HOH
191
A
WAT
66
2
HOH
HOH
192
A
WAT
68
2
HOH
HOH
193
A
WAT
69
2
HOH
HOH
194
A
WAT
70
2
HOH
HOH
195
A
WAT
71
2
HOH
HOH
196
A
WAT
73
2
HOH
HOH
197
A
WAT
74
2
HOH
HOH
198
A
WAT
75
2
HOH
HOH
199
A
WAT
76
2
HOH
HOH
200
A
WAT
77
2
HOH
HOH
201
A
WAT
78
2
HOH
HOH
202
A
WAT
80
2
HOH
HOH
203
A
WAT
81
2
HOH
HOH
204
A
WAT
82
2
HOH
HOH
205
A
WAT
89
2
HOH
HOH
206
A
WAT
95
2
HOH
HOH
207
A
WAT
97
2
HOH
HOH
208
A
WAT
98
2
HOH
HOH
209
A
WAT
99
2
HOH
HOH
210
A
WAT
100
2
HOH
HOH
211
A
WAT
101
2
HOH
HOH
212
A
WAT
103
2
HOH
HOH
213
A
WAT
104
2
HOH
HOH
214
A
WAT
105
2
HOH
HOH
215
A
WAT
106
2
HOH
HOH
216
A
WAT
107
2
HOH
HOH
217
A
WAT
108
2
HOH
HOH
218
A
WAT
109
2
HOH
HOH
219
A
n
1
-18
A
n
2
-17
A
n
3
-16
A
n
4
-15
A
n
5
-14
A
n
6
-13
A
n
7
-12
A
n
8
-11
A
n
9
-10
A
n
10
-9
A
n
11
-8
A
n
12
-7
A
n
13
-6
A
n
14
-5
A
n
15
-4
A
n
16
-3
A
n
17
-2
A
n
18
-1
A
n
19
0
A
n
20
1
A
n
21
2
A
n
22
3
A
n
23
4
A
n
24
5
A
n
25
6
A
n
26
7
A
n
27
8
A
n
28
9
A
GLN
10
n
29
GLN
10
A
PHE
11
n
30
PHE
11
A
VAL
12
n
31
VAL
12
A
PRO
13
n
32
PRO
13
A
ALA
14
n
33
ALA
14
A
ASP
15
n
34
ASP
15
A
GLN
16
n
35
GLN
16
A
ALA
17
n
36
ALA
17
A
PHE
18
n
37
PHE
18
A
ALA
19
n
38
ALA
19
A
PHE
20
n
39
PHE
20
A
ASP
21
n
40
ASP
21
A
PHE
22
n
41
PHE
22
A
GLN
23
n
42
GLN
23
A
GLN
24
n
43
GLN
24
A
ASN
25
n
44
ASN
25
A
GLN
26
n
45
GLN
26
A
HIS
27
n
46
HIS
27
A
ASP
28
n
47
ASP
28
A
LEU
29
n
48
LEU
29
A
ASN
30
n
49
ASN
30
A
LEU
31
n
50
LEU
31
A
THR
32
n
51
THR
32
A
TRP
33
n
52
TRP
33
A
GLN
34
n
53
GLN
34
A
ILE
35
n
54
ILE
35
A
LYS
36
n
55
LYS
36
A
ASP
37
n
56
ASP
37
A
GLY
38
n
57
GLY
38
A
TYR
39
n
58
TYR
39
A
TYR
40
n
59
TYR
40
A
LEU
41
n
60
LEU
41
A
TYR
42
n
61
TYR
42
A
ARG
43
n
62
ARG
43
A
LYS
44
n
63
LYS
44
A
GLN
45
n
64
GLN
45
A
ILE
46
n
65
ILE
46
A
ARG
47
n
66
ARG
47
A
ILE
48
n
67
ILE
48
A
THR
49
n
68
THR
49
A
PRO
50
n
69
PRO
50
A
GLU
51
n
70
GLU
51
A
HIS
52
n
71
HIS
52
A
ALA
53
n
72
ALA
53
A
LYS
54
n
73
LYS
54
A
ILE
55
n
74
ILE
55
A
ALA
56
n
75
ALA
56
A
ASP
57
n
76
ASP
57
A
VAL
58
n
77
VAL
58
A
GLN
59
n
78
GLN
59
A
LEU
60
n
79
LEU
60
A
PRO
61
n
80
PRO
61
A
GLN
62
n
81
GLN
62
A
GLY
63
n
82
GLY
63
A
VAL
64
n
83
VAL
64
A
TRP
65
n
84
TRP
65
A
HIS
66
n
85
HIS
66
A
GLU
67
n
86
GLU
67
A
ASP
68
n
87
ASP
68
A
GLU
69
n
88
GLU
69
A
PHE
70
n
89
PHE
70
A
TYR
71
n
90
TYR
71
A
GLY
72
n
91
GLY
72
A
LYS
73
n
92
LYS
73
A
SER
74
n
93
SER
74
A
GLU
75
n
94
GLU
75
A
ILE
76
n
95
ILE
76
A
TYR
77
n
96
TYR
77
A
ARG
78
n
97
ARG
78
A
ASP
79
n
98
ASP
79
A
ARG
80
n
99
ARG
80
A
LEU
81
n
100
LEU
81
A
THR
82
n
101
THR
82
A
LEU
83
n
102
LEU
83
A
PRO
84
n
103
PRO
84
A
VAL
85
n
104
VAL
85
A
THR
86
n
105
THR
86
A
ILE
87
n
106
ILE
87
A
ASN
88
n
107
ASN
88
A
GLN
89
n
108
GLN
89
A
ALA
90
n
109
ALA
90
A
SER
91
n
110
SER
91
A
ALA
92
n
111
ALA
92
A
GLY
93
n
112
GLY
93
A
ALA
94
n
113
ALA
94
A
THR
95
n
114
THR
95
A
LEU
96
n
115
LEU
96
A
THR
97
n
116
THR
97
A
VAL
98
n
117
VAL
98
A
THR
99
n
118
THR
99
A
TYR
100
n
119
TYR
100
A
GLN
101
n
120
GLN
101
A
GLY
102
n
121
GLY
102
A
CYS
103
n
122
CYS
103
A
ALA
104
n
123
ALA
104
A
ASP
105
n
124
ASP
105
A
ALA
106
n
125
ALA
106
A
GLY
107
n
126
GLY
107
A
PHE
108
n
127
PHE
108
A
CYS
109
n
128
CYS
109
A
TYR
110
n
129
TYR
110
A
PRO
111
n
130
PRO
111
A
PRO
112
n
131
PRO
112
A
GLU
113
n
132
GLU
113
A
THR
114
n
133
THR
114
A
LYS
115
n
134
LYS
115
A
THR
116
n
135
THR
116
A
VAL
117
n
136
VAL
117
A
PRO
118
n
137
PRO
118
A
LEU
119
n
138
LEU
119
A
SER
120
n
139
SER
120
A
GLU
121
n
140
GLU
121
A
VAL
122
n
141
VAL
122
A
VAL
123
n
142
VAL
123
A
ALA
124
n
143
ALA
124
A
ASN
125
n
144
ASN
125
A
n
145
126
A
n
146
127
A
n
147
128
A
n
148
129
A
n
149
130
A
n
150
131
A
n
151
132
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
49
A
N
THR
68
A
O
THR
97
A
O
THR
116
A
O
ASP
28
A
O
ASP
47
A
N
ASN
25
A
N
ASN
44
A
N
THR
49
A
N
THR
68
A
O
THR
97
A
O
THR
116
A
N
VAL
64
A
N
VAL
83
A
O
ILE
76
A
O
ILE
95
A
O
TYR
77
A
O
TYR
96
A
N
LEU
41
A
N
LEU
60
A
N
TYR
40
A
N
TYR
59
A
O
CYS
103
A
O
CYS
122
A
N
ALA
104
A
N
ALA
123
A
O
PHE
108
A
O
PHE
127
1
A
MET
-18
A
MET
1
1
Y
1
A
ARG
-17
A
ARG
2
1
Y
1
A
GLY
-16
A
GLY
3
1
Y
1
A
SER
-15
A
SER
4
1
Y
1
A
HIS
-14
A
HIS
5
1
Y
1
A
HIS
-13
A
HIS
6
1
Y
1
A
HIS
-12
A
HIS
7
1
Y
1
A
HIS
-11
A
HIS
8
1
Y
1
A
HIS
-10
A
HIS
9
1
Y
1
A
HIS
-9
A
HIS
10
1
Y
1
A
GLY
-8
A
GLY
11
1
Y
1
A
SER
-7
A
SER
12
1
Y
1
A
GLU
-6
A
GLU
13
1
Y
1
A
ASN
-5
A
ASN
14
1
Y
1
A
LEU
-4
A
LEU
15
1
Y
1
A
TYR
-3
A
TYR
16
1
Y
1
A
PHE
-2
A
PHE
17
1
Y
1
A
GLN
-1
A
GLN
18
1
Y
1
A
SER
0
A
SER
19
1
Y
1
A
GLY
1
A
GLY
20
1
Y
1
A
LEU
2
A
LEU
21
1
Y
1
A
PHE
3
A
PHE
22
1
Y
1
A
ASP
4
A
ASP
23
1
Y
1
A
ALA
5
A
ALA
24
1
Y
1
A
PRO
6
A
PRO
25
1
Y
1
A
GLY
7
A
GLY
26
1
Y
1
A
ARG
8
A
ARG
27
1
Y
1
A
SER
9
A
SER
28
1
Y
1
A
ASN
126
A
ASN
145
1
Y
1
A
ALA
127
A
ALA
146
1
Y
1
A
ALA
128
A
ALA
147
1
Y
1
A
PRO
129
A
PRO
148
1
Y
1
A
GLN
130
A
GLN
149
1
Y
1
A
PRO
131
A
PRO
150
1
Y
1
A
VAL
132
A
VAL
151
1
Y
1
A
GLN
26
60.72
-119.62
1
A
ASP
79
68.77
-58.88
1
A
ALA
124
-48.58
171.72
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
30.3
-6.81
0.00
0.00
13.10
0.00
-6.29
0.254
0.007
0.216
0.239
0.221
1.90
30.55
1192
11998
11540
10.3
95.5
RANDOM
457274.18
457274.18
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
41.8671
0.382323
0.30
0.24
5.00
0.15
0.16
1.90
30.55
87
87
0
0
0
0.006
1.3
26.6
0.79
0.243
0.019
0.244
2.02
166
1503
6
9.9
84.7
15.1
1.89
30.55
1JPE
11998
11606
0
5
1
95.6
1.89
1.97
89.6
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
DsbD-alpha
Crystal structure of DsbD-alpha; the N-terminal domain of DsbD
1
N
N
2
N
N
A
PRO
13
A
PRO
32
HELX_P
A
ALA
17
A
ALA
36
1
1
5
A
LYS
44
A
LYS
63
HELX_P
A
ILE
46
A
ILE
65
5
2
3
disulf
2.038
A
CYS
103
A
SG
CYS
122
1_555
A
CYS
109
A
SG
CYS
128
1_555
ELECTRON TRANSPORT
Redox-active center, electron transport, inner membrane, Disulfide bond formation
DSBD_ECOLI
UNP
1
19
P36655
AGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRD
RLTLPVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAAPQPV
19
151
1JPE
0
132
P36655
A
1
19
151
1
EXPRESSION TAG
MET
-18
1JPE
A
P36655
UNP
1
1
EXPRESSION TAG
ARG
-17
1JPE
A
P36655
UNP
2
1
EXPRESSION TAG
GLY
-16
1JPE
A
P36655
UNP
3
1
EXPRESSION TAG
SER
-15
1JPE
A
P36655
UNP
4
1
EXPRESSION TAG
HIS
-14
1JPE
A
P36655
UNP
5
1
EXPRESSION TAG
HIS
-13
1JPE
A
P36655
UNP
6
1
EXPRESSION TAG
HIS
-12
1JPE
A
P36655
UNP
7
1
EXPRESSION TAG
HIS
-11
1JPE
A
P36655
UNP
8
1
EXPRESSION TAG
HIS
-10
1JPE
A
P36655
UNP
9
1
EXPRESSION TAG
HIS
-9
1JPE
A
P36655
UNP
10
1
EXPRESSION TAG
GLY
-8
1JPE
A
P36655
UNP
11
1
EXPRESSION TAG
SER
-7
1JPE
A
P36655
UNP
12
1
EXPRESSION TAG
GLU
-6
1JPE
A
P36655
UNP
13
1
EXPRESSION TAG
ASN
-5
1JPE
A
P36655
UNP
14
1
EXPRESSION TAG
LEU
-4
1JPE
A
P36655
UNP
15
1
EXPRESSION TAG
TYR
-3
1JPE
A
P36655
UNP
16
1
EXPRESSION TAG
PHE
-2
1JPE
A
P36655
UNP
17
1
EXPRESSION TAG
GLN
-1
1JPE
A
P36655
UNP
18
1
ALA
CONFLICT
SER
0
1JPE
A
P36655
UNP
19
19
4
3
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
47
A
ARG
66
A
ILE
55
A
ILE
74
A
ARG
80
A
ARG
99
A
TYR
100
A
TYR
119
A
ASP
28
A
ASP
47
A
ILE
35
A
ILE
54
A
PHE
18
A
PHE
37
A
ASN
25
A
ASN
44
A
ARG
47
A
ARG
66
A
ILE
55
A
ILE
74
A
ARG
80
A
ARG
99
A
TYR
100
A
TYR
119
A
GLU
113
A
GLU
132
A
PRO
118
A
PRO
137
A
VAL
64
A
VAL
83
A
ASP
68
A
ASP
87
A
GLY
72
A
GLY
91
A
TYR
77
A
TYR
96
A
TYR
39
A
TYR
58
A
TYR
42
A
TYR
61
A
GLY
102
A
GLY
121
A
ALA
104
A
ALA
123
A
PHE
108
A
PHE
127
A
CYS
109
A
CYS
128
20
C 2 2 21