0.010974 0.000000 0.007094 0.000000 0.009095 0.000000 0.000000 0.000000 0.020621 0.00000 0.00000 0.00000 Ciatto, C. Tissot, A.C. Tschopp, M. Capitani, G. Pecorari, F. Pluckthun, A. Grutter, M.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 122.88 90.00 91.122 109.952 57.744 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 312 1059 1071 10.1006/jmbi.2001.5016 11580250 Zooming in on the hydrophobic ridge of H-2D(b): implications for the conformational variability of bound peptides. 2001 10.2210/pdb1jpg/pdb pdb_00001jpg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1998-12-08 MARRESEARCH Si SINGLE WAVELENGTH M x-ray 1 0.873 1.0 BM1A ESRF 0.873 SYNCHROTRON ESRF BEAMLINE BM1A 32601.303 H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN extracellular domains 1 man polymer 11835.555 BETA-2-MICROGLOBULIN 1 man polymer 1078.176 LCMV peptidic epitope np396 1 syn polymer 18.015 water 33 nat water no no MGPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLR NLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAY LEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG TFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST MGPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLR NLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAY LEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG TFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST A polypeptide(L) no no MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA CRVKHDSMAEPKTVYWDRDM MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA CRVKHDSMAEPKTVYWDRDM B polypeptide(L) no no FQPQNGQFI FQPQNGQFI C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli 1 2.67 53.88 VAPOR DIFFUSION, HANGING DROP 6.4 Ammonium phosphate, PEG8000, Tris-HCl, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references 1 0 2001-10-24 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-12-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 1FG2 contains the same H-2Db molecule complexed with LCMV peptide epitope gp33. 1JPF contains the same H-2Db molecule complexed with LCMV peptidic epitope gp276. RCSB Y PDBJ 2001-08-02 REL REL HOH water Solid-phase peptide synthesis sample WAT 4 4 HOH HOH 281 A WAT 5 4 HOH HOH 282 A WAT 6 4 HOH HOH 283 A WAT 7 4 HOH HOH 284 A WAT 8 4 HOH HOH 285 A WAT 9 4 HOH HOH 286 A WAT 12 4 HOH HOH 287 A WAT 18 4 HOH HOH 288 A WAT 20 4 HOH HOH 289 A WAT 21 4 HOH HOH 290 A WAT 24 4 HOH HOH 291 A WAT 25 4 HOH HOH 292 A WAT 26 4 HOH HOH 293 A WAT 28 4 HOH HOH 294 A WAT 30 4 HOH HOH 295 A WAT 31 4 HOH HOH 296 A WAT 1 4 HOH HOH 100 B WAT 2 4 HOH HOH 101 B WAT 3 4 HOH HOH 102 B WAT 10 4 HOH HOH 103 B WAT 13 4 HOH HOH 104 B WAT 14 4 HOH HOH 105 B WAT 15 4 HOH HOH 106 B WAT 16 4 HOH HOH 107 B WAT 17 4 HOH HOH 108 B WAT 19 4 HOH HOH 109 B WAT 22 4 HOH HOH 110 B WAT 23 4 HOH HOH 111 B WAT 27 4 HOH HOH 112 B WAT 29 4 HOH HOH 113 B WAT 32 4 HOH HOH 114 B WAT 33 4 HOH HOH 115 B WAT 11 4 HOH HOH 11 C n 1 0 A n 2 1 A PRO 2 n 3 PRO 2 A HIS 3 n 4 HIS 3 A SER 4 n 5 SER 4 A MET 5 n 6 MET 5 A ARG 6 n 7 ARG 6 A TYR 7 n 8 TYR 7 A PHE 8 n 9 PHE 8 A GLU 9 n 10 GLU 9 A THR 10 n 11 THR 10 A ALA 11 n 12 ALA 11 A VAL 12 n 13 VAL 12 A SER 13 n 14 SER 13 A ARG 14 n 15 ARG 14 A PRO 15 n 16 PRO 15 A GLY 16 n 17 GLY 16 A LEU 17 n 18 LEU 17 A GLU 18 n 19 GLU 18 A GLU 19 n 20 GLU 19 A PRO 20 n 21 PRO 20 A ARG 21 n 22 ARG 21 A TYR 22 n 23 TYR 22 A ILE 23 n 24 ILE 23 A SER 24 n 25 SER 24 A VAL 25 n 26 VAL 25 A GLY 26 n 27 GLY 26 A TYR 27 n 28 TYR 27 A VAL 28 n 29 VAL 28 A ASP 29 n 30 ASP 29 A ASN 30 n 31 ASN 30 A LYS 31 n 32 LYS 31 A GLU 32 n 33 GLU 32 A PHE 33 n 34 PHE 33 A VAL 34 n 35 VAL 34 A ARG 35 n 36 ARG 35 A PHE 36 n 37 PHE 36 A ASP 37 n 38 ASP 37 A SER 38 n 39 SER 38 A ASP 39 n 40 ASP 39 A ALA 40 n 41 ALA 40 A GLU 41 n 42 GLU 41 A ASN 42 n 43 ASN 42 A PRO 43 n 44 PRO 43 A ARG 44 n 45 ARG 44 A TYR 45 n 46 TYR 45 A GLU 46 n 47 GLU 46 A PRO 47 n 48 PRO 47 A ARG 48 n 49 ARG 48 A ALA 49 n 50 ALA 49 A PRO 50 n 51 PRO 50 A TRP 51 n 52 TRP 51 A MET 52 n 53 MET 52 A GLU 53 n 54 GLU 53 A GLN 54 n 55 GLN 54 A GLU 55 n 56 GLU 55 A GLY 56 n 57 GLY 56 A PRO 57 n 58 PRO 57 A GLU 58 n 59 GLU 58 A TYR 59 n 60 TYR 59 A TRP 60 n 61 TRP 60 A GLU 61 n 62 GLU 61 A ARG 62 n 63 ARG 62 A GLU 63 n 64 GLU 63 A THR 64 n 65 THR 64 A GLN 65 n 66 GLN 65 A LYS 66 n 67 LYS 66 A ALA 67 n 68 ALA 67 A LYS 68 n 69 LYS 68 A GLY 69 n 70 GLY 69 A GLN 70 n 71 GLN 70 A GLU 71 n 72 GLU 71 A GLN 72 n 73 GLN 72 A TRP 73 n 74 TRP 73 A PHE 74 n 75 PHE 74 A ARG 75 n 76 ARG 75 A VAL 76 n 77 VAL 76 A SER 77 n 78 SER 77 A LEU 78 n 79 LEU 78 A ARG 79 n 80 ARG 79 A ASN 80 n 81 ASN 80 A LEU 81 n 82 LEU 81 A LEU 82 n 83 LEU 82 A GLY 83 n 84 GLY 83 A TYR 84 n 85 TYR 84 A TYR 85 n 86 TYR 85 A ASN 86 n 87 ASN 86 A GLN 87 n 88 GLN 87 A SER 88 n 89 SER 88 A ALA 89 n 90 ALA 89 A GLY 90 n 91 GLY 90 A GLY 91 n 92 GLY 91 A SER 92 n 93 SER 92 A HIS 93 n 94 HIS 93 A THR 94 n 95 THR 94 A LEU 95 n 96 LEU 95 A GLN 96 n 97 GLN 96 A GLN 97 n 98 GLN 97 A MET 98 n 99 MET 98 A SER 99 n 100 SER 99 A GLY 100 n 101 GLY 100 A CYS 101 n 102 CYS 101 A ASP 102 n 103 ASP 102 A LEU 103 n 104 LEU 103 A GLY 104 n 105 GLY 104 A SER 105 n 106 SER 105 A ASP 106 n 107 ASP 106 A TRP 107 n 108 TRP 107 A ARG 108 n 109 ARG 108 A LEU 109 n 110 LEU 109 A LEU 110 n 111 LEU 110 A ARG 111 n 112 ARG 111 A GLY 112 n 113 GLY 112 A TYR 113 n 114 TYR 113 A LEU 114 n 115 LEU 114 A GLN 115 n 116 GLN 115 A PHE 116 n 117 PHE 116 A ALA 117 n 118 ALA 117 A TYR 118 n 119 TYR 118 A GLU 119 n 120 GLU 119 A GLY 120 n 121 GLY 120 A ARG 121 n 122 ARG 121 A ASP 122 n 123 ASP 122 A TYR 123 n 124 TYR 123 A ILE 124 n 125 ILE 124 A ALA 125 n 126 ALA 125 A LEU 126 n 127 LEU 126 A ASN 127 n 128 ASN 127 A GLU 128 n 129 GLU 128 A ASP 129 n 130 ASP 129 A LEU 130 n 131 LEU 130 A LYS 131 n 132 LYS 131 A THR 132 n 133 THR 132 A TRP 133 n 134 TRP 133 A THR 134 n 135 THR 134 A ALA 135 n 136 ALA 135 A ALA 136 n 137 ALA 136 A ASP 137 n 138 ASP 137 A MET 138 n 139 MET 138 A ALA 139 n 140 ALA 139 A ALA 140 n 141 ALA 140 A GLN 141 n 142 GLN 141 A ILE 142 n 143 ILE 142 A THR 143 n 144 THR 143 A ARG 144 n 145 ARG 144 A ARG 145 n 146 ARG 145 A LYS 146 n 147 LYS 146 A TRP 147 n 148 TRP 147 A GLU 148 n 149 GLU 148 A GLN 149 n 150 GLN 149 A SER 150 n 151 SER 150 A GLY 151 n 152 GLY 151 A ALA 152 n 153 ALA 152 A ALA 153 n 154 ALA 153 A GLU 154 n 155 GLU 154 A HIS 155 n 156 HIS 155 A TYR 156 n 157 TYR 156 A LYS 157 n 158 LYS 157 A ALA 158 n 159 ALA 158 A TYR 159 n 160 TYR 159 A LEU 160 n 161 LEU 160 A GLU 161 n 162 GLU 161 A GLY 162 n 163 GLY 162 A GLU 163 n 164 GLU 163 A CYS 164 n 165 CYS 164 A VAL 165 n 166 VAL 165 A GLU 166 n 167 GLU 166 A TRP 167 n 168 TRP 167 A LEU 168 n 169 LEU 168 A HIS 169 n 170 HIS 169 A ARG 170 n 171 ARG 170 A TYR 171 n 172 TYR 171 A LEU 172 n 173 LEU 172 A LYS 173 n 174 LYS 173 A ASN 174 n 175 ASN 174 A GLY 175 n 176 GLY 175 A ASN 176 n 177 ASN 176 A ALA 177 n 178 ALA 177 A THR 178 n 179 THR 178 A LEU 179 n 180 LEU 179 A LEU 180 n 181 LEU 180 A ARG 181 n 182 ARG 181 A THR 182 n 183 THR 182 A ASP 183 n 184 ASP 183 A SER 184 n 185 SER 184 A PRO 185 n 186 PRO 185 A LYS 186 n 187 LYS 186 A ALA 187 n 188 ALA 187 A HIS 188 n 189 HIS 188 A VAL 189 n 190 VAL 189 A THR 190 n 191 THR 190 A HIS 191 n 192 HIS 191 A HIS 192 n 193 HIS 192 A PRO 193 n 194 PRO 193 A ARG 194 n 195 ARG 194 A SER 195 n 196 SER 195 A LYS 196 n 197 LYS 196 A GLY 197 n 198 GLY 197 A GLU 198 n 199 GLU 198 A VAL 199 n 200 VAL 199 A THR 200 n 201 THR 200 A LEU 201 n 202 LEU 201 A ARG 202 n 203 ARG 202 A CYS 203 n 204 CYS 203 A TRP 204 n 205 TRP 204 A ALA 205 n 206 ALA 205 A LEU 206 n 207 LEU 206 A GLY 207 n 208 GLY 207 A PHE 208 n 209 PHE 208 A TYR 209 n 210 TYR 209 A PRO 210 n 211 PRO 210 A ALA 211 n 212 ALA 211 A ASP 212 n 213 ASP 212 A ILE 213 n 214 ILE 213 A THR 214 n 215 THR 214 A LEU 215 n 216 LEU 215 A THR 216 n 217 THR 216 A TRP 217 n 218 TRP 217 A GLN 218 n 219 GLN 218 A LEU 219 n 220 LEU 219 A ASN 220 n 221 ASN 220 A GLY 221 n 222 GLY 221 A GLU 222 n 223 GLU 222 A GLU 223 n 224 GLU 223 A LEU 224 n 225 LEU 224 A THR 225 n 226 THR 225 A GLN 226 n 227 GLN 226 A ASP 227 n 228 ASP 227 A MET 228 n 229 MET 228 A GLU 229 n 230 GLU 229 A LEU 230 n 231 LEU 230 A VAL 231 n 232 VAL 231 A GLU 232 n 233 GLU 232 A THR 233 n 234 THR 233 A ARG 234 n 235 ARG 234 A PRO 235 n 236 PRO 235 A ALA 236 n 237 ALA 236 A GLY 237 n 238 GLY 237 A ASP 238 n 239 ASP 238 A GLY 239 n 240 GLY 239 A THR 240 n 241 THR 240 A PHE 241 n 242 PHE 241 A GLN 242 n 243 GLN 242 A LYS 243 n 244 LYS 243 A TRP 244 n 245 TRP 244 A ALA 245 n 246 ALA 245 A SER 246 n 247 SER 246 A VAL 247 n 248 VAL 247 A VAL 248 n 249 VAL 248 A VAL 249 n 250 VAL 249 A PRO 250 n 251 PRO 250 A LEU 251 n 252 LEU 251 A GLY 252 n 253 GLY 252 A LYS 253 n 254 LYS 253 A GLU 254 n 255 GLU 254 A GLN 255 n 256 GLN 255 A ASN 256 n 257 ASN 256 A TYR 257 n 258 TYR 257 A THR 258 n 259 THR 258 A CYS 259 n 260 CYS 259 A ARG 260 n 261 ARG 260 A VAL 261 n 262 VAL 261 A TYR 262 n 263 TYR 262 A HIS 263 n 264 HIS 263 A GLU 264 n 265 GLU 264 A GLY 265 n 266 GLY 265 A LEU 266 n 267 LEU 266 A PRO 267 n 268 PRO 267 A GLU 268 n 269 GLU 268 A PRO 269 n 270 PRO 269 A LEU 270 n 271 LEU 270 A THR 271 n 272 THR 271 A LEU 272 n 273 LEU 272 A ARG 273 n 274 ARG 273 A TRP 274 n 275 TRP 274 A GLU 275 n 276 GLU 275 A PRO 276 n 277 PRO 276 A n 278 277 A n 279 278 A n 280 279 A n 281 280 A n 1 0 B ILE 1 n 2 ILE 1 B GLN 2 n 3 GLN 2 B LYS 3 n 4 LYS 3 B THR 4 n 5 THR 4 B PRO 5 n 6 PRO 5 B GLN 6 n 7 GLN 6 B ILE 7 n 8 ILE 7 B GLN 8 n 9 GLN 8 B VAL 9 n 10 VAL 9 B TYR 10 n 11 TYR 10 B SER 11 n 12 SER 11 B ARG 12 n 13 ARG 12 B HIS 13 n 14 HIS 13 B PRO 14 n 15 PRO 14 B PRO 15 n 16 PRO 15 B GLU 16 n 17 GLU 16 B ASN 17 n 18 ASN 17 B GLY 18 n 19 GLY 18 B LYS 19 n 20 LYS 19 B PRO 20 n 21 PRO 20 B ASN 21 n 22 ASN 21 B ILE 22 n 23 ILE 22 B LEU 23 n 24 LEU 23 B ASN 24 n 25 ASN 24 B CYS 25 n 26 CYS 25 B TYR 26 n 27 TYR 26 B VAL 27 n 28 VAL 27 B THR 28 n 29 THR 28 B GLN 29 n 30 GLN 29 B PHE 30 n 31 PHE 30 B HIS 31 n 32 HIS 31 B PRO 32 n 33 PRO 32 B PRO 33 n 34 PRO 33 B HIS 34 n 35 HIS 34 B ILE 35 n 36 ILE 35 B GLU 36 n 37 GLU 36 B ILE 37 n 38 ILE 37 B GLN 38 n 39 GLN 38 B MET 39 n 40 MET 39 B LEU 40 n 41 LEU 40 B LYS 41 n 42 LYS 41 B ASN 42 n 43 ASN 42 B GLY 43 n 44 GLY 43 B LYS 44 n 45 LYS 44 B LYS 45 n 46 LYS 45 B ILE 46 n 47 ILE 46 B PRO 47 n 48 PRO 47 B LYS 48 n 49 LYS 48 B VAL 49 n 50 VAL 49 B GLU 50 n 51 GLU 50 B MET 51 n 52 MET 51 B SER 52 n 53 SER 52 B ASP 53 n 54 ASP 53 B MET 54 n 55 MET 54 B SER 55 n 56 SER 55 B PHE 56 n 57 PHE 56 B SER 57 n 58 SER 57 B LYS 58 n 59 LYS 58 B ASP 59 n 60 ASP 59 B TRP 60 n 61 TRP 60 B SER 61 n 62 SER 61 B PHE 62 n 63 PHE 62 B TYR 63 n 64 TYR 63 B ILE 64 n 65 ILE 64 B LEU 65 n 66 LEU 65 B ALA 66 n 67 ALA 66 B HIS 67 n 68 HIS 67 B THR 68 n 69 THR 68 B GLU 69 n 70 GLU 69 B PHE 70 n 71 PHE 70 B THR 71 n 72 THR 71 B PRO 72 n 73 PRO 72 B THR 73 n 74 THR 73 B GLU 74 n 75 GLU 74 B THR 75 n 76 THR 75 B ASP 76 n 77 ASP 76 B THR 77 n 78 THR 77 B TYR 78 n 79 TYR 78 B ALA 79 n 80 ALA 79 B CYS 80 n 81 CYS 80 B ARG 81 n 82 ARG 81 B VAL 82 n 83 VAL 82 B LYS 83 n 84 LYS 83 B HIS 84 n 85 HIS 84 B ASP 85 n 86 ASP 85 B SER 86 n 87 SER 86 B MET 87 n 88 MET 87 B ALA 88 n 89 ALA 88 B GLU 89 n 90 GLU 89 B PRO 90 n 91 PRO 90 B LYS 91 n 92 LYS 91 B THR 92 n 93 THR 92 B VAL 93 n 94 VAL 93 B TYR 94 n 95 TYR 94 B TRP 95 n 96 TRP 95 B ASP 96 n 97 ASP 96 B ARG 97 n 98 ARG 97 B ASP 98 n 99 ASP 98 B MET 99 n 100 MET 99 B PHE 1 n 1 PHE 1 C GLN 2 n 2 GLN 2 C PRO 3 n 3 PRO 3 C GLN 4 n 4 GLN 4 C ASN 5 n 5 ASN 5 C GLY 6 n 6 GLY 6 C GLN 7 n 7 GLN 7 C PHE 8 n 8 PHE 8 C ILE 9 n 9 ILE 9 C author_and_software_defined_assembly PISA 3 trimeric 4370 -18 19320 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 46 A N GLU 47 A O ARG 35 A O ARG 36 A O PHE 36 A O PHE 37 A N SER 24 A N SER 25 A N TYR 27 A N TYR 28 A O ARG 6 A O ARG 7 A N SER 13 A N SER 14 A O HIS 93 A O HIS 94 A O ASP 102 A O ASP 103 A N LEU 110 A N LEU 111 A N TYR 118 A N TYR 119 A O ARG 121 A O ARG 122 A O ALA 125 A O ALA 126 A N THR 134 A N THR 135 A O HIS 192 A O HIS 193 A N THR 200 A N THR 201 A O PHE 208 A O PHE 209 A N PHE 241 A N PHE 242 A O SER 246 A O SER 247 A N GLU 229 A N GLU 230 A O HIS 192 A O HIS 193 A N THR 200 A N THR 201 A O PHE 208 A O PHE 209 A N PHE 241 A N PHE 242 A O GLN 242 A O GLN 243 A N ARG 234 A N ARG 235 A O GLU 222 A O GLU 223 A N LEU 219 A N LEU 220 A O GLN 218 A O GLN 219 A N THR 258 A N THR 259 A O VAL 261 A O VAL 262 A N LEU 270 A N LEU 271 B O TYR 10 B O TYR 11 B N ASN 24 B N ASN 25 B O PHE 30 B O PHE 31 B N PHE 62 B N PHE 63 B O HIS 67 B O HIS 68 B N GLU 50 B N GLU 51 B O TYR 10 B O TYR 11 B N ASN 24 B N ASN 25 B O PHE 30 B O PHE 31 B N PHE 62 B N PHE 63 B N TYR 63 B N TYR 64 B O SER 55 B O SER 56 B O LYS 44 B O LYS 45 B N LYS 41 B N LYS 42 B N LEU 40 B N LEU 41 B O ALA 79 B O ALA 80 B N VAL 82 B N VAL 83 B O LYS 91 B O LYS 92 1 A MET 0 A MET 1 1 Y 1 A GLY 1 A GLY 2 1 Y 1 A PRO 277 A PRO 278 1 Y 1 A PRO 278 A PRO 279 1 Y 1 A SER 279 A SER 280 1 Y 1 A THR 280 A THR 281 1 Y 1 B MET 0 B MET 1 1 Y 1 A ALA 40 -46.86 158.09 1 A GLU 41 -48.43 -82.28 1 A ALA 89 -69.47 9.33 1 A ARG 111 -170.08 146.20 1 A LEU 114 -167.34 101.69 1 A LYS 131 -144.98 -24.87 1 A GLN 149 -68.95 27.50 1 A SER 150 -159.42 5.34 1 A ASN 176 -58.91 -79.42 1 A LEU 180 -86.74 43.02 1 A ARG 194 -176.98 -145.87 1 A SER 195 -20.15 149.57 1 A GLU 223 -52.18 108.60 1 A ASP 227 68.42 64.79 1 A LYS 253 -76.46 22.21 1 A GLN 255 -68.92 22.93 1 A PRO 269 -48.28 161.49 1 B TRP 60 75.15 -16.26 0.288 0.228 2.20 30.0 2285 23164 23164 RANDOM 1 0.0 MOLECULAR REPLACEMENT Engh & Huber 2.20 30.0 33 3191 0 0 3158 2.20 30.0 1JPG 23164 23164 -3.0 1 95.6 2.20 2.25 79.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 0.9 Crystal Structure Of The LCMV Peptidic Epitope Np396 In Complex With The Murine Class I Mhc Molecule H-2Db 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N The biological assembly is a ternary complex consisting of H-2Db, beta-2 microglobulin, and the peptidic epitope A ALA 49 A ALA 50 HELX_P A GLU 53 A GLU 54 5 1 5 A GLY 56 A GLY 57 HELX_P A ASN 86 A ASN 87 1 2 31 A ASP 137 A ASP 138 HELX_P A GLN 149 A GLN 150 1 3 13 A GLY 151 A GLY 152 HELX_P A GLY 162 A GLY 163 1 4 12 A GLY 162 A GLY 163 HELX_P A GLY 175 A GLY 176 1 5 14 A GLY 175 A GLY 176 HELX_P A LEU 180 A LEU 181 1 6 6 A GLY 252 A GLY 253 HELX_P A GLN 255 A GLN 256 5 7 4 disulf 2.050 A CYS 101 A SG CYS 102 1_555 A CYS 164 A SG CYS 165 1_555 disulf 2.034 A CYS 203 A SG CYS 204 1_555 A CYS 259 A SG CYS 260 1_555 disulf 2.020 B CYS 25 B SG CYS 26 1_555 B CYS 80 B SG CYS 81 1_555 IMMUNE SYSTEM Ig fold, IMMUNE SYSTEM A TYR 209 A TYR 210 1 A PRO 210 A PRO 211 -0.18 B HIS 31 B HIS 32 1 B PRO 32 B PRO 33 0.10 HA11_MOUSE UNP 1 25 P01899 GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYL EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST B2MG_MOUSE UNP 2 21 P01887 IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM 1JPG PDB 3 1JPG 25 304 1JPG 1 280 P01899 A 1 2 281 21 119 1JPG 1 99 P01887 B 2 2 100 1 9 1JPG 1 9 1JPG C 3 1 9 1 initiating methionine MET 0 1JPG A P01899 UNP 1 2 initiating methionine MET 0 1JPG B P01887 UNP 1 8 4 4 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 46 A GLU 47 A PRO 47 A PRO 48 A LYS 31 A LYS 32 A ASP 37 A ASP 38 A ARG 21 A ARG 22 A VAL 28 A VAL 29 A SER 4 A SER 5 A SER 13 A SER 14 A HIS 93 A HIS 94 A LEU 103 A LEU 104 A LEU 109 A LEU 110 A TYR 118 A TYR 119 A ARG 121 A ARG 122 A LEU 126 A LEU 127 A TRP 133 A TRP 134 A ALA 135 A ALA 136 A LYS 186 A LYS 187 A PRO 193 A PRO 194 A GLU 198 A GLU 199 A PHE 208 A PHE 209 A PHE 241 A PHE 242 A PRO 250 A PRO 251 A GLU 229 A GLU 230 A LEU 230 A LEU 231 A LYS 186 A LYS 187 A PRO 193 A PRO 194 A GLU 198 A GLU 199 A PHE 208 A PHE 209 A PHE 241 A PHE 242 A PRO 250 A PRO 251 A ARG 234 A ARG 235 A PRO 235 A PRO 236 A GLU 222 A GLU 223 A GLU 223 A GLU 224 A THR 214 A THR 215 A LEU 219 A LEU 220 A TYR 257 A TYR 258 A TYR 262 A TYR 263 A LEU 270 A LEU 271 A LEU 272 A LEU 273 B GLN 6 B GLN 7 B SER 11 B SER 12 B ASN 21 B ASN 22 B PHE 30 B PHE 31 B PHE 62 B PHE 63 B PHE 70 B PHE 71 B GLU 50 B GLU 51 B MET 51 B MET 52 B GLN 6 B GLN 7 B SER 11 B SER 12 B ASN 21 B ASN 22 B PHE 30 B PHE 31 B PHE 62 B PHE 63 B PHE 70 B PHE 71 B SER 55 B SER 56 B PHE 56 B PHE 57 B LYS 44 B LYS 45 B LYS 45 B LYS 46 B GLU 36 B GLU 37 B LYS 41 B LYS 42 B TYR 78 B TYR 79 B LYS 83 B LYS 84 B LYS 91 B LYS 92 B TYR 94 B TYR 95 5 C 1 2 1