0.009555
0.000000
0.000000
0.000000
0.009555
0.000000
0.000000
0.000000
0.006734
0.00000
0.00000
0.00000
Ruzheinikov, S.N.
Burke, J.
Sedelnikova, S.
Baker, P.J.
Taylor, R.
Bullough, P.A.
Muir, N.M.
Gore, M.G.
Rice, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90
90
90
104.66
104.66
148.51
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H27 N7 O14 P2
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
S
P
N
251
N
O
N
252
N
O
N
253
N
O
N
254
N
C
N
255
R
C
N
256
N
O
N
257
S
C
N
258
N
O
N
259
R
C
N
260
N
O
N
261
R
C
Y
262
N
N
Y
263
N
C
Y
264
N
N
Y
265
N
C
Y
266
N
C
N
267
N
N
Y
268
N
N
Y
269
N
C
Y
270
N
N
Y
271
N
C
N
272
N
O
N
273
N
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
C
N
278
R
C
N
279
N
O
N
280
S
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
R
C
Y
285
N
N
Y
286
N
C
Y
287
N
C
N
288
N
C
N
289
N
O
N
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
R
C
N
380
N
O
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
N
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
N
430
N
O
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
C
N
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
Y
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
doub
N
269
N
sing
N
270
N
sing
Y
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
Y
299
N
doub
N
300
N
sing
N
301
N
sing
Y
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
UK
Structure
STRUE6
2005
0969-2126
9
789
802
10.1016/S0969-2126(01)00645-1
11566129
Glycerol dehydrogenase. structure, specificity, and mechanism of a family III polyol dehydrogenase.
2001
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
165
167
10.1107/S0907444900014918
Purification, crystallization and quaternary structure analysis of a glycerol dehydrogenase S305C mutant from Bacillus stearothemophilus
2001
10.2210/pdb1jq5/pdb
pdb_00001jq5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
290
1
CCD
1999-11-29
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
PX14.2
SRS
0.979
SYNCHROTRON
SRS BEAMLINE PX14.2
39564.996
Glycerol dehydrogenase
1.1.1.6
S305C
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
1
syn
non-polymer
18.015
water
271
nat
water
no
no
MAAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIAN
IARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIA
NAPPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANT
LLSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDA
SREDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEKHRK
MAAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIAN
IARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIA
NAPPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANT
LLSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDA
SREDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEKHRK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Geobacillus
Escherichia
sample
GLDA or GLD
1422
Geobacillus stearothermophilus
562
Escherichia coli
JM103
PLASMID
pKK233-2
1
2.57
52.12
VAPOR DIFFUSION, HANGING DROP
Ammonium Sulfate, PEG 400, ZnCl2, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Atomic model
Derived calculations
Version format compliance
Atomic model
Database references
Derived calculations
Data collection
Refinement description
1
0
2001-10-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2011-11-16
1
4
2021-10-27
1
5
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein in complex with glycerol.
1JPU contains the same protein native form.
RCSB
Y
RCSB
2001-08-03
REL
ZN
ZINC ION
NAD
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
HOH
water
1JPU
PDB ENTRY 1JPU
PDB
experimental model
ZN
1
2
ZN
ZN
371
A
ZN
2
2
ZN
ZN
372
A
NAD
1
3
NAD
NAD
401
A
HOH
1
4
HOH
HOH
402
A
HOH
2
4
HOH
HOH
403
A
HOH
3
4
HOH
HOH
404
A
HOH
4
4
HOH
HOH
405
A
HOH
5
4
HOH
HOH
406
A
HOH
6
4
HOH
HOH
407
A
HOH
7
4
HOH
HOH
408
A
HOH
8
4
HOH
HOH
409
A
HOH
9
4
HOH
HOH
410
A
HOH
10
4
HOH
HOH
411
A
HOH
11
4
HOH
HOH
412
A
HOH
12
4
HOH
HOH
413
A
HOH
13
4
HOH
HOH
414
A
HOH
14
4
HOH
HOH
415
A
HOH
15
4
HOH
HOH
416
A
HOH
16
4
HOH
HOH
417
A
HOH
17
4
HOH
HOH
418
A
HOH
18
4
HOH
HOH
419
A
HOH
19
4
HOH
HOH
420
A
HOH
20
4
HOH
HOH
421
A
HOH
21
4
HOH
HOH
422
A
HOH
22
4
HOH
HOH
423
A
HOH
23
4
HOH
HOH
424
A
HOH
24
4
HOH
HOH
425
A
HOH
25
4
HOH
HOH
426
A
HOH
26
4
HOH
HOH
427
A
HOH
27
4
HOH
HOH
428
A
HOH
28
4
HOH
HOH
429
A
HOH
29
4
HOH
HOH
430
A
HOH
30
4
HOH
HOH
431
A
HOH
31
4
HOH
HOH
432
A
HOH
32
4
HOH
HOH
433
A
HOH
33
4
HOH
HOH
434
A
HOH
34
4
HOH
HOH
435
A
HOH
35
4
HOH
HOH
436
A
HOH
36
4
HOH
HOH
437
A
HOH
37
4
HOH
HOH
438
A
HOH
38
4
HOH
HOH
439
A
HOH
39
4
HOH
HOH
440
A
HOH
40
4
HOH
HOH
441
A
HOH
41
4
HOH
HOH
442
A
HOH
42
4
HOH
HOH
443
A
HOH
43
4
HOH
HOH
444
A
HOH
44
4
HOH
HOH
445
A
HOH
45
4
HOH
HOH
446
A
HOH
46
4
HOH
HOH
447
A
HOH
47
4
HOH
HOH
448
A
HOH
48
4
HOH
HOH
449
A
HOH
49
4
HOH
HOH
450
A
HOH
50
4
HOH
HOH
451
A
HOH
51
4
HOH
HOH
452
A
HOH
52
4
HOH
HOH
453
A
HOH
53
4
HOH
HOH
454
A
HOH
54
4
HOH
HOH
455
A
HOH
55
4
HOH
HOH
456
A
HOH
56
4
HOH
HOH
457
A
HOH
57
4
HOH
HOH
458
A
HOH
58
4
HOH
HOH
459
A
HOH
59
4
HOH
HOH
460
A
HOH
60
4
HOH
HOH
461
A
HOH
61
4
HOH
HOH
462
A
HOH
62
4
HOH
HOH
463
A
HOH
63
4
HOH
HOH
464
A
HOH
64
4
HOH
HOH
465
A
HOH
65
4
HOH
HOH
466
A
HOH
66
4
HOH
HOH
467
A
HOH
67
4
HOH
HOH
468
A
HOH
68
4
HOH
HOH
469
A
HOH
69
4
HOH
HOH
470
A
HOH
70
4
HOH
HOH
471
A
HOH
71
4
HOH
HOH
472
A
HOH
72
4
HOH
HOH
473
A
HOH
73
4
HOH
HOH
474
A
HOH
74
4
HOH
HOH
475
A
HOH
75
4
HOH
HOH
476
A
HOH
76
4
HOH
HOH
477
A
HOH
77
4
HOH
HOH
478
A
HOH
78
4
HOH
HOH
479
A
HOH
79
4
HOH
HOH
480
A
HOH
80
4
HOH
HOH
481
A
HOH
81
4
HOH
HOH
482
A
HOH
82
4
HOH
HOH
483
A
HOH
83
4
HOH
HOH
484
A
HOH
84
4
HOH
HOH
485
A
HOH
85
4
HOH
HOH
486
A
HOH
86
4
HOH
HOH
487
A
HOH
87
4
HOH
HOH
488
A
HOH
88
4
HOH
HOH
489
A
HOH
89
4
HOH
HOH
490
A
HOH
90
4
HOH
HOH
491
A
HOH
91
4
HOH
HOH
492
A
HOH
92
4
HOH
HOH
493
A
HOH
93
4
HOH
HOH
494
A
HOH
94
4
HOH
HOH
495
A
HOH
95
4
HOH
HOH
496
A
HOH
96
4
HOH
HOH
497
A
HOH
97
4
HOH
HOH
498
A
HOH
98
4
HOH
HOH
499
A
HOH
99
4
HOH
HOH
500
A
HOH
100
4
HOH
HOH
501
A
HOH
101
4
HOH
HOH
502
A
HOH
102
4
HOH
HOH
503
A
HOH
103
4
HOH
HOH
504
A
HOH
104
4
HOH
HOH
505
A
HOH
105
4
HOH
HOH
506
A
HOH
106
4
HOH
HOH
507
A
HOH
107
4
HOH
HOH
508
A
HOH
108
4
HOH
HOH
509
A
HOH
109
4
HOH
HOH
510
A
HOH
110
4
HOH
HOH
511
A
HOH
111
4
HOH
HOH
512
A
HOH
112
4
HOH
HOH
513
A
HOH
113
4
HOH
HOH
514
A
HOH
114
4
HOH
HOH
515
A
HOH
115
4
HOH
HOH
516
A
HOH
116
4
HOH
HOH
517
A
HOH
117
4
HOH
HOH
518
A
HOH
118
4
HOH
HOH
519
A
HOH
119
4
HOH
HOH
520
A
HOH
120
4
HOH
HOH
521
A
HOH
121
4
HOH
HOH
522
A
HOH
122
4
HOH
HOH
523
A
HOH
123
4
HOH
HOH
524
A
HOH
124
4
HOH
HOH
525
A
HOH
125
4
HOH
HOH
526
A
HOH
126
4
HOH
HOH
527
A
HOH
127
4
HOH
HOH
528
A
HOH
128
4
HOH
HOH
529
A
HOH
129
4
HOH
HOH
530
A
HOH
130
4
HOH
HOH
531
A
HOH
131
4
HOH
HOH
532
A
HOH
132
4
HOH
HOH
533
A
HOH
133
4
HOH
HOH
534
A
HOH
134
4
HOH
HOH
535
A
HOH
135
4
HOH
HOH
536
A
HOH
136
4
HOH
HOH
537
A
HOH
137
4
HOH
HOH
538
A
HOH
138
4
HOH
HOH
539
A
HOH
139
4
HOH
HOH
540
A
HOH
140
4
HOH
HOH
541
A
HOH
141
4
HOH
HOH
542
A
HOH
142
4
HOH
HOH
543
A
HOH
143
4
HOH
HOH
544
A
HOH
144
4
HOH
HOH
545
A
HOH
145
4
HOH
HOH
546
A
HOH
146
4
HOH
HOH
547
A
HOH
147
4
HOH
HOH
548
A
HOH
148
4
HOH
HOH
549
A
HOH
149
4
HOH
HOH
550
A
HOH
150
4
HOH
HOH
551
A
HOH
151
4
HOH
HOH
552
A
HOH
152
4
HOH
HOH
553
A
HOH
153
4
HOH
HOH
554
A
HOH
154
4
HOH
HOH
555
A
HOH
155
4
HOH
HOH
556
A
HOH
156
4
HOH
HOH
557
A
HOH
157
4
HOH
HOH
558
A
HOH
158
4
HOH
HOH
559
A
HOH
159
4
HOH
HOH
560
A
HOH
160
4
HOH
HOH
561
A
HOH
161
4
HOH
HOH
562
A
HOH
162
4
HOH
HOH
563
A
HOH
163
4
HOH
HOH
564
A
HOH
164
4
HOH
HOH
565
A
HOH
165
4
HOH
HOH
566
A
HOH
166
4
HOH
HOH
567
A
HOH
167
4
HOH
HOH
568
A
HOH
168
4
HOH
HOH
569
A
HOH
169
4
HOH
HOH
570
A
HOH
170
4
HOH
HOH
571
A
HOH
171
4
HOH
HOH
572
A
HOH
172
4
HOH
HOH
573
A
HOH
173
4
HOH
HOH
574
A
HOH
174
4
HOH
HOH
575
A
HOH
175
4
HOH
HOH
576
A
HOH
176
4
HOH
HOH
577
A
HOH
177
4
HOH
HOH
578
A
HOH
178
4
HOH
HOH
579
A
HOH
179
4
HOH
HOH
580
A
HOH
180
4
HOH
HOH
581
A
HOH
181
4
HOH
HOH
582
A
HOH
182
4
HOH
HOH
583
A
HOH
183
4
HOH
HOH
584
A
HOH
184
4
HOH
HOH
585
A
HOH
185
4
HOH
HOH
586
A
HOH
186
4
HOH
HOH
587
A
HOH
187
4
HOH
HOH
588
A
HOH
188
4
HOH
HOH
589
A
HOH
189
4
HOH
HOH
590
A
HOH
190
4
HOH
HOH
591
A
HOH
191
4
HOH
HOH
592
A
HOH
192
4
HOH
HOH
593
A
HOH
193
4
HOH
HOH
594
A
HOH
194
4
HOH
HOH
595
A
HOH
195
4
HOH
HOH
596
A
HOH
196
4
HOH
HOH
597
A
HOH
197
4
HOH
HOH
598
A
HOH
198
4
HOH
HOH
599
A
HOH
199
4
HOH
HOH
600
A
HOH
200
4
HOH
HOH
601
A
HOH
201
4
HOH
HOH
602
A
HOH
202
4
HOH
HOH
603
A
HOH
203
4
HOH
HOH
604
A
HOH
204
4
HOH
HOH
605
A
HOH
205
4
HOH
HOH
606
A
HOH
206
4
HOH
HOH
607
A
HOH
207
4
HOH
HOH
608
A
HOH
208
4
HOH
HOH
609
A
HOH
209
4
HOH
HOH
610
A
HOH
210
4
HOH
HOH
611
A
HOH
211
4
HOH
HOH
612
A
HOH
212
4
HOH
HOH
613
A
HOH
213
4
HOH
HOH
614
A
HOH
214
4
HOH
HOH
615
A
HOH
215
4
HOH
HOH
616
A
HOH
216
4
HOH
HOH
617
A
HOH
217
4
HOH
HOH
618
A
HOH
218
4
HOH
HOH
619
A
HOH
219
4
HOH
HOH
620
A
HOH
220
4
HOH
HOH
621
A
HOH
221
4
HOH
HOH
622
A
HOH
222
4
HOH
HOH
623
A
HOH
223
4
HOH
HOH
624
A
HOH
224
4
HOH
HOH
625
A
HOH
225
4
HOH
HOH
626
A
HOH
226
4
HOH
HOH
627
A
HOH
227
4
HOH
HOH
628
A
HOH
228
4
HOH
HOH
629
A
HOH
229
4
HOH
HOH
630
A
HOH
230
4
HOH
HOH
631
A
HOH
231
4
HOH
HOH
632
A
HOH
232
4
HOH
HOH
633
A
HOH
233
4
HOH
HOH
634
A
HOH
234
4
HOH
HOH
635
A
HOH
235
4
HOH
HOH
636
A
HOH
236
4
HOH
HOH
637
A
HOH
237
4
HOH
HOH
638
A
HOH
238
4
HOH
HOH
639
A
HOH
239
4
HOH
HOH
640
A
HOH
240
4
HOH
HOH
641
A
HOH
241
4
HOH
HOH
642
A
HOH
242
4
HOH
HOH
643
A
HOH
243
4
HOH
HOH
644
A
HOH
244
4
HOH
HOH
645
A
HOH
245
4
HOH
HOH
646
A
HOH
246
4
HOH
HOH
647
A
HOH
247
4
HOH
HOH
648
A
HOH
248
4
HOH
HOH
649
A
HOH
249
4
HOH
HOH
650
A
HOH
250
4
HOH
HOH
651
A
HOH
251
4
HOH
HOH
652
A
HOH
252
4
HOH
HOH
653
A
HOH
253
4
HOH
HOH
654
A
HOH
254
4
HOH
HOH
655
A
HOH
255
4
HOH
HOH
656
A
HOH
256
4
HOH
HOH
657
A
HOH
257
4
HOH
HOH
658
A
HOH
258
4
HOH
HOH
659
A
HOH
259
4
HOH
HOH
660
A
HOH
260
4
HOH
HOH
661
A
HOH
261
4
HOH
HOH
662
A
HOH
262
4
HOH
HOH
663
A
HOH
263
4
HOH
HOH
664
A
HOH
264
4
HOH
HOH
665
A
HOH
265
4
HOH
HOH
666
A
HOH
266
4
HOH
HOH
667
A
HOH
267
4
HOH
HOH
668
A
HOH
268
4
HOH
HOH
669
A
HOH
269
4
HOH
HOH
670
A
HOH
270
4
HOH
HOH
671
A
HOH
271
4
HOH
HOH
672
A
n
1
1
A
ALA
2
n
2
ALA
2
A
ALA
3
n
3
ALA
3
A
GLU
4
n
4
GLU
4
A
ARG
5
n
5
ARG
5
A
VAL
6
n
6
VAL
6
A
PHE
7
n
7
PHE
7
A
ILE
8
n
8
ILE
8
A
SER
9
n
9
SER
9
A
PRO
10
n
10
PRO
10
A
ALA
11
n
11
ALA
11
A
LYS
12
n
12
LYS
12
A
TYR
13
n
13
TYR
13
A
VAL
14
n
14
VAL
14
A
GLN
15
n
15
GLN
15
A
GLY
16
n
16
GLY
16
A
LYS
17
n
17
LYS
17
A
ASN
18
n
18
ASN
18
A
VAL
19
n
19
VAL
19
A
ILE
20
n
20
ILE
20
A
THR
21
n
21
THR
21
A
LYS
22
n
22
LYS
22
A
ILE
23
n
23
ILE
23
A
ALA
24
n
24
ALA
24
A
ASN
25
n
25
ASN
25
A
TYR
26
n
26
TYR
26
A
LEU
27
n
27
LEU
27
A
GLU
28
n
28
GLU
28
A
GLY
29
n
29
GLY
29
A
ILE
30
n
30
ILE
30
A
GLY
31
n
31
GLY
31
A
ASN
32
n
32
ASN
32
A
LYS
33
n
33
LYS
33
A
THR
34
n
34
THR
34
A
VAL
35
n
35
VAL
35
A
VAL
36
n
36
VAL
36
A
ILE
37
n
37
ILE
37
A
ALA
38
n
38
ALA
38
A
ASP
39
n
39
ASP
39
A
GLU
40
n
40
GLU
40
A
ILE
41
n
41
ILE
41
A
VAL
42
n
42
VAL
42
A
TRP
43
n
43
TRP
43
A
LYS
44
n
44
LYS
44
A
ILE
45
n
45
ILE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
HIS
48
n
48
HIS
48
A
THR
49
n
49
THR
49
A
ILE
50
n
50
ILE
50
A
VAL
51
n
51
VAL
51
A
ASN
52
n
52
ASN
52
A
GLU
53
n
53
GLU
53
A
LEU
54
n
54
LEU
54
A
LYS
55
n
55
LYS
55
A
LYS
56
n
56
LYS
56
A
GLY
57
n
57
GLY
57
A
ASN
58
n
58
ASN
58
A
ILE
59
n
59
ILE
59
A
ALA
60
n
60
ALA
60
A
ALA
61
n
61
ALA
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
VAL
64
n
64
VAL
64
A
VAL
65
n
65
VAL
65
A
PHE
66
n
66
PHE
66
A
SER
67
n
67
SER
67
A
GLY
68
n
68
GLY
68
A
GLU
69
n
69
GLU
69
A
ALA
70
n
70
ALA
70
A
SER
71
n
71
SER
71
A
ARG
72
n
72
ARG
72
A
ASN
73
n
73
ASN
73
A
GLU
74
n
74
GLU
74
A
VAL
75
n
75
VAL
75
A
GLU
76
n
76
GLU
76
A
ARG
77
n
77
ARG
77
A
ILE
78
n
78
ILE
78
A
ALA
79
n
79
ALA
79
A
ASN
80
n
80
ASN
80
A
ILE
81
n
81
ILE
81
A
ALA
82
n
82
ALA
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
ALA
85
n
85
ALA
85
A
GLU
86
n
86
GLU
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
ILE
89
n
89
ILE
89
A
VAL
90
n
90
VAL
90
A
ILE
91
n
91
ILE
91
A
GLY
92
n
92
GLY
92
A
VAL
93
n
93
VAL
93
A
GLY
94
n
94
GLY
94
A
GLY
95
n
95
GLY
95
A
GLY
96
n
96
GLY
96
A
LYS
97
n
97
LYS
97
A
THR
98
n
98
THR
98
A
LEU
99
n
99
LEU
99
A
ASP
100
n
100
ASP
100
A
THR
101
n
101
THR
101
A
ALA
102
n
102
ALA
102
A
LYS
103
n
103
LYS
103
A
ALA
104
n
104
ALA
104
A
VAL
105
n
105
VAL
105
A
ALA
106
n
106
ALA
106
A
ASP
107
n
107
ASP
107
A
GLU
108
n
108
GLU
108
A
LEU
109
n
109
LEU
109
A
ASP
110
n
110
ASP
110
A
ALA
111
n
111
ALA
111
A
TYR
112
n
112
TYR
112
A
ILE
113
n
113
ILE
113
A
VAL
114
n
114
VAL
114
A
ILE
115
n
115
ILE
115
A
VAL
116
n
116
VAL
116
A
PRO
117
n
117
PRO
117
A
THR
118
n
118
THR
118
A
ALA
119
n
119
ALA
119
A
ALA
120
n
120
ALA
120
A
SER
121
n
121
SER
121
A
THR
122
n
122
THR
122
A
ASP
123
n
123
ASP
123
A
ALA
124
n
124
ALA
124
A
PRO
125
n
125
PRO
125
A
THR
126
n
126
THR
126
A
SER
127
n
127
SER
127
A
ALA
128
n
128
ALA
128
A
LEU
129
n
129
LEU
129
A
SER
130
n
130
SER
130
A
VAL
131
n
131
VAL
131
A
ILE
132
n
132
ILE
132
A
TYR
133
n
133
TYR
133
A
SER
134
n
134
SER
134
A
ASP
135
n
135
ASP
135
A
ASP
136
n
136
ASP
136
A
GLY
137
n
137
GLY
137
A
VAL
138
n
138
VAL
138
A
PHE
139
n
139
PHE
139
A
GLU
140
n
140
GLU
140
A
SER
141
n
141
SER
141
A
TYR
142
n
142
TYR
142
A
ARG
143
n
143
ARG
143
A
PHE
144
n
144
PHE
144
A
TYR
145
n
145
TYR
145
A
LYS
146
n
146
LYS
146
A
LYS
147
n
147
LYS
147
A
ASN
148
n
148
ASN
148
A
PRO
149
n
149
PRO
149
A
ASP
150
n
150
ASP
150
A
LEU
151
n
151
LEU
151
A
VAL
152
n
152
VAL
152
A
LEU
153
n
153
LEU
153
A
VAL
154
n
154
VAL
154
A
ASP
155
n
155
ASP
155
A
THR
156
n
156
THR
156
A
LYS
157
n
157
LYS
157
A
ILE
158
n
158
ILE
158
A
ILE
159
n
159
ILE
159
A
ALA
160
n
160
ALA
160
A
ASN
161
n
161
ASN
161
A
ALA
162
n
162
ALA
162
A
PRO
163
n
163
PRO
163
A
PRO
164
n
164
PRO
164
A
ARG
165
n
165
ARG
165
A
LEU
166
n
166
LEU
166
A
LEU
167
n
167
LEU
167
A
ALA
168
n
168
ALA
168
A
SER
169
n
169
SER
169
A
GLY
170
n
170
GLY
170
A
ILE
171
n
171
ILE
171
A
ALA
172
n
172
ALA
172
A
ASP
173
n
173
ASP
173
A
ALA
174
n
174
ALA
174
A
LEU
175
n
175
LEU
175
A
ALA
176
n
176
ALA
176
A
THR
177
n
177
THR
177
A
TRP
178
n
178
TRP
178
A
VAL
179
n
179
VAL
179
A
GLU
180
n
180
GLU
180
A
ALA
181
n
181
ALA
181
A
ARG
182
n
182
ARG
182
A
SER
183
n
183
SER
183
A
VAL
184
n
184
VAL
184
A
ILE
185
n
185
ILE
185
A
LYS
186
n
186
LYS
186
A
SER
187
n
187
SER
187
A
GLY
188
n
188
GLY
188
A
GLY
189
n
189
GLY
189
A
LYS
190
n
190
LYS
190
A
THR
191
n
191
THR
191
A
MET
192
n
192
MET
192
A
ALA
193
n
193
ALA
193
A
GLY
194
n
194
GLY
194
A
GLY
195
n
195
GLY
195
A
ILE
196
n
196
ILE
196
A
PRO
197
n
197
PRO
197
A
THR
198
n
198
THR
198
A
ILE
199
n
199
ILE
199
A
ALA
200
n
200
ALA
200
A
ALA
201
n
201
ALA
201
A
GLU
202
n
202
GLU
202
A
ALA
203
n
203
ALA
203
A
ILE
204
n
204
ILE
204
A
ALA
205
n
205
ALA
205
A
GLU
206
n
206
GLU
206
A
LYS
207
n
207
LYS
207
A
CYS
208
n
208
CYS
208
A
GLU
209
n
209
GLU
209
A
GLN
210
n
210
GLN
210
A
THR
211
n
211
THR
211
A
LEU
212
n
212
LEU
212
A
PHE
213
n
213
PHE
213
A
LYS
214
n
214
LYS
214
A
TYR
215
n
215
TYR
215
A
GLY
216
n
216
GLY
216
A
LYS
217
n
217
LYS
217
A
LEU
218
n
218
LEU
218
A
ALA
219
n
219
ALA
219
A
TYR
220
n
220
TYR
220
A
GLU
221
n
221
GLU
221
A
SER
222
n
222
SER
222
A
VAL
223
n
223
VAL
223
A
LYS
224
n
224
LYS
224
A
ALA
225
n
225
ALA
225
A
LYS
226
n
226
LYS
226
A
VAL
227
n
227
VAL
227
A
VAL
228
n
228
VAL
228
A
THR
229
n
229
THR
229
A
PRO
230
n
230
PRO
230
A
ALA
231
n
231
ALA
231
A
LEU
232
n
232
LEU
232
A
GLU
233
n
233
GLU
233
A
ALA
234
n
234
ALA
234
A
VAL
235
n
235
VAL
235
A
VAL
236
n
236
VAL
236
A
GLU
237
n
237
GLU
237
A
ALA
238
n
238
ALA
238
A
ASN
239
n
239
ASN
239
A
THR
240
n
240
THR
240
A
LEU
241
n
241
LEU
241
A
LEU
242
n
242
LEU
242
A
SER
243
n
243
SER
243
A
GLY
244
n
244
GLY
244
A
LEU
245
n
245
LEU
245
A
GLY
246
n
246
GLY
246
A
PHE
247
n
247
PHE
247
A
GLU
248
n
248
GLU
248
A
SER
249
n
249
SER
249
A
GLY
250
n
250
GLY
250
A
GLY
251
n
251
GLY
251
A
LEU
252
n
252
LEU
252
A
ALA
253
n
253
ALA
253
A
ALA
254
n
254
ALA
254
A
ALA
255
n
255
ALA
255
A
HIS
256
n
256
HIS
256
A
ALA
257
n
257
ALA
257
A
ILE
258
n
258
ILE
258
A
HIS
259
n
259
HIS
259
A
ASN
260
n
260
ASN
260
A
GLY
261
n
261
GLY
261
A
PHE
262
n
262
PHE
262
A
THR
263
n
263
THR
263
A
ALA
264
n
264
ALA
264
A
LEU
265
n
265
LEU
265
A
GLU
266
n
266
GLU
266
A
GLY
267
n
267
GLY
267
A
GLU
268
n
268
GLU
268
A
ILE
269
n
269
ILE
269
A
HIS
270
n
270
HIS
270
A
HIS
271
n
271
HIS
271
A
LEU
272
n
272
LEU
272
A
THR
273
n
273
THR
273
A
HIS
274
n
274
HIS
274
A
GLY
275
n
275
GLY
275
A
GLU
276
n
276
GLU
276
A
LYS
277
n
277
LYS
277
A
VAL
278
n
278
VAL
278
A
ALA
279
n
279
ALA
279
A
PHE
280
n
280
PHE
280
A
GLY
281
n
281
GLY
281
A
THR
282
n
282
THR
282
A
LEU
283
n
283
LEU
283
A
VAL
284
n
284
VAL
284
A
GLN
285
n
285
GLN
285
A
LEU
286
n
286
LEU
286
A
ALA
287
n
287
ALA
287
A
LEU
288
n
288
LEU
288
A
GLU
289
n
289
GLU
289
A
GLU
290
n
290
GLU
290
A
HIS
291
n
291
HIS
291
A
SER
292
n
292
SER
292
A
GLN
293
n
293
GLN
293
A
GLN
294
n
294
GLN
294
A
GLU
295
n
295
GLU
295
A
ILE
296
n
296
ILE
296
A
GLU
297
n
297
GLU
297
A
ARG
298
n
298
ARG
298
A
TYR
299
n
299
TYR
299
A
ILE
300
n
300
ILE
300
A
GLU
301
n
301
GLU
301
A
LEU
302
n
302
LEU
302
A
TYR
303
n
303
TYR
303
A
LEU
304
n
304
LEU
304
A
CYS
305
n
305
CYS
305
A
LEU
306
n
306
LEU
306
A
ASP
307
n
307
ASP
307
A
LEU
308
n
308
LEU
308
A
PRO
309
n
309
PRO
309
A
VAL
310
n
310
VAL
310
A
THR
311
n
311
THR
311
A
LEU
312
n
312
LEU
312
A
GLU
313
n
313
GLU
313
A
ASP
314
n
314
ASP
314
A
ILE
315
n
315
ILE
315
A
LYS
316
n
316
LYS
316
A
LEU
317
n
317
LEU
317
A
LYS
318
n
318
LYS
318
A
ASP
319
n
319
ASP
319
A
ALA
320
n
320
ALA
320
A
SER
321
n
321
SER
321
A
ARG
322
n
322
ARG
322
A
GLU
323
n
323
GLU
323
A
ASP
324
n
324
ASP
324
A
ILE
325
n
325
ILE
325
A
LEU
326
n
326
LEU
326
A
LYS
327
n
327
LYS
327
A
VAL
328
n
328
VAL
328
A
ALA
329
n
329
ALA
329
A
LYS
330
n
330
LYS
330
A
ALA
331
n
331
ALA
331
A
ALA
332
n
332
ALA
332
A
THR
333
n
333
THR
333
A
ALA
334
n
334
ALA
334
A
GLU
335
n
335
GLU
335
A
GLY
336
n
336
GLY
336
A
GLU
337
n
337
GLU
337
A
THR
338
n
338
THR
338
A
ILE
339
n
339
ILE
339
A
HIS
340
n
340
HIS
340
A
ASN
341
n
341
ASN
341
A
ALA
342
n
342
ALA
342
A
PHE
343
n
343
PHE
343
A
ASN
344
n
344
ASN
344
A
VAL
345
n
345
VAL
345
A
THR
346
n
346
THR
346
A
ALA
347
n
347
ALA
347
A
ASP
348
n
348
ASP
348
A
ASP
349
n
349
ASP
349
A
VAL
350
n
350
VAL
350
A
ALA
351
n
351
ALA
351
A
ASP
352
n
352
ASP
352
A
ALA
353
n
353
ALA
353
A
ILE
354
n
354
ILE
354
A
PHE
355
n
355
PHE
355
A
ALA
356
n
356
ALA
356
A
ALA
357
n
357
ALA
357
A
ASP
358
n
358
ASP
358
A
GLN
359
n
359
GLN
359
A
TYR
360
n
360
TYR
360
A
ALA
361
n
361
ALA
361
A
LYS
362
n
362
LYS
362
A
ALA
363
n
363
ALA
363
A
TYR
364
n
364
TYR
364
A
LYS
365
n
365
LYS
365
A
GLU
366
n
366
GLU
366
A
LYS
367
n
367
LYS
367
A
n
368
368
A
n
369
369
A
n
370
370
A
author_and_software_defined_assembly
PISA,PQS
8
octameric
32570
-491
97190
A
ASP
173
A
OD1
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
A
ASP
173
A
OD2
ASP
173
1_555
52.9
A
ASP
173
A
OD1
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HIS
256
A
NE2
HIS
256
1_555
103.0
A
ASP
173
A
OD2
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HIS
256
A
NE2
HIS
256
1_555
154.0
A
ASP
173
A
OD1
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HIS
274
A
NE2
HIS
274
1_555
104.9
A
ASP
173
A
OD2
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HIS
274
A
NE2
HIS
274
1_555
85.3
A
HIS
256
A
NE2
HIS
256
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HIS
274
A
NE2
HIS
274
1_555
113.6
A
ASP
173
A
OD1
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HOH
402
E
O
HOH
1_555
119.9
A
ASP
173
A
OD2
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HOH
402
E
O
HOH
1_555
91.6
A
HIS
256
A
NE2
HIS
256
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HOH
402
E
O
HOH
1_555
93.5
A
HIS
274
A
NE2
HIS
274
1_555
A
ZN
371
B
ZN
ZN
1_555
A
HOH
402
E
O
HOH
1_555
120.3
A
GLU
268
A
OE2
GLU
268
1_555
A
ZN
372
C
ZN
ZN
1_555
A
GLU
268
A
OE2
GLU
268
16_555
97.6
A
GLU
268
A
OE2
GLU
268
1_555
A
ZN
372
C
ZN
ZN
1_555
A
HIS
271
A
NE2
HIS
271
1_555
107.0
A
GLU
268
A
OE2
GLU
268
16_555
A
ZN
372
C
ZN
ZN
1_555
A
HIS
271
A
NE2
HIS
271
1_555
111.5
A
GLU
268
A
OE2
GLU
268
1_555
A
ZN
372
C
ZN
ZN
1_555
A
HIS
271
A
NE2
HIS
271
16_555
113.4
A
GLU
268
A
OE2
GLU
268
16_555
A
ZN
372
C
ZN
ZN
1_555
A
HIS
271
A
NE2
HIS
271
16_555
104.7
A
HIS
271
A
NE2
HIS
271
1_555
A
ZN
372
C
ZN
ZN
1_555
A
HIS
271
A
NE2
HIS
271
16_555
120.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-y,x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_555
y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
14
A
N
VAL
14
A
O
VAL
152
A
O
VAL
152
A
N
LEU
151
A
N
LEU
151
A
O
ILE
113
A
O
ILE
113
A
N
VAL
114
A
N
VAL
114
A
O
VAL
90
A
O
VAL
90
A
N
ILE
89
A
N
ILE
89
A
O
LYS
33
A
O
LYS
33
A
N
THR
34
A
N
THR
34
A
O
ALA
60
A
O
ALA
60
A
O
ILE
132
A
O
ILE
132
A
N
GLU
140
A
N
GLU
140
1
A
ZN
372
C
ZN
1
A
MET
1
A
MET
1
1
Y
1
A
HIS
368
A
HIS
368
1
Y
1
A
ARG
369
A
ARG
369
1
Y
1
A
LYS
370
A
LYS
370
1
Y
1
A
A
NE2
O
HIS
HOH
259
542
1.97
1
A
A
ND1
O
HIS
HOH
274
542
2.12
1
-14.64
2.00
111.60
96.96
A
A
A
CB
CA
C
ILE
ILE
ILE
159
159
159
B
N
1
A
A
CA
CB
ILE
ILE
159
159
0.170
0.023
1.544
1.714
B
N
1
A
A
CA
CB
LEU
LEU
175
175
0.142
0.023
1.533
1.675
B
N
1
A
A
O
O
HOH
HOH
599
599
2.15
1_555
16_555
1
A
ALA
46
-147.83
-22.01
1
A
ALA
120
-102.49
62.75
1
A
ALA
128
-90.37
43.10
1
A
GLU
140
-129.43
-53.92
1
A
ALA
253
-146.04
-123.11
30.06
0.1903000
0.1514000
1.7
10.00
2095
42016
41600
RANDOM
1
Isotropic
THROUGHOUT
1
MOLECULAR REPLACEMENT
PDB ENTRY 1JPU
Engh & Huber
0.20
0.16
5.0
0.17
0.20
1.7
10.00
271
3065
46
0
2748
1.59
0.013
21.267
1.03
3.88
6.05
5.33
8.58
1.7
10.0
1JQ5
42016
42016
0
0
0.0470000
1
19.9
4.7
92.1
0.3760000
1.70
1.74
2.7
1
78.6
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Bacillus Stearothermophilus Glycerol dehydrogenase complex with NAD+
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
The biological assembly is an octamer generated from the monomer in the asymmetric unit by the operations:
y, -x, z;
-x, y, -z;
x, -y, -z;
y, x, -z;
-x, -y, -z;
-y, x, z;
-y, -x, -z;
A
ASN
18
A
ASN
18
HELX_P
A
THR
21
A
THR
21
5
1
4
A
LYS
22
A
LYS
22
HELX_P
A
GLU
28
A
GLU
28
1
2
7
A
ASP
39
A
ASP
39
HELX_P
A
ALA
46
A
ALA
46
1
3
8
A
ALA
46
A
ALA
46
HELX_P
A
LYS
56
A
LYS
56
1
4
11
A
SER
71
A
SER
71
HELX_P
A
ALA
85
A
ALA
85
1
5
15
A
GLY
95
A
GLY
95
HELX_P
A
ASP
110
A
ASP
110
1
6
16
A
THR
156
A
THR
156
HELX_P
A
ASN
161
A
ASN
161
1
7
6
A
PRO
163
A
PRO
163
HELX_P
A
GLY
188
A
GLY
188
1
8
26
A
THR
198
A
THR
198
HELX_P
A
ALA
225
A
ALA
225
1
9
28
A
THR
229
A
THR
229
HELX_P
A
GLY
251
A
GLY
251
1
10
23
A
ALA
253
A
ALA
253
HELX_P
A
PHE
262
A
PHE
262
1
11
10
A
THR
263
A
THR
263
HELX_P
A
LEU
265
A
LEU
265
5
12
3
A
GLY
267
A
GLY
267
HELX_P
A
LEU
272
A
LEU
272
5
13
6
A
THR
273
A
THR
273
HELX_P
A
GLU
289
A
GLU
289
1
14
17
A
SER
292
A
SER
292
HELX_P
A
LEU
306
A
LEU
306
1
15
15
A
SER
321
A
SER
321
HELX_P
A
THR
333
A
THR
333
1
16
13
A
GLU
337
A
GLU
337
HELX_P
A
ALA
342
A
ALA
342
5
17
6
A
THR
346
A
THR
346
HELX_P
A
GLU
366
A
GLU
366
1
18
21
metalc
1.991
A
ASP
173
A
OD1
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
metalc
2.700
A
ASP
173
A
OD2
ASP
173
1_555
A
ZN
371
B
ZN
ZN
1_555
metalc
2.030
A
HIS
256
A
NE2
HIS
256
1_555
A
ZN
371
B
ZN
ZN
1_555
metalc
2.041
A
GLU
268
A
OE2
GLU
268
1_555
A
ZN
372
C
ZN
ZN
1_555
metalc
2.094
A
GLU
268
A
OE2
GLU
268
16_555
A
ZN
372
C
ZN
ZN
1_555
metalc
1.945
A
HIS
271
A
NE2
HIS
271
1_555
A
ZN
372
C
ZN
ZN
1_555
metalc
1.954
A
HIS
271
A
NE2
HIS
271
16_555
A
ZN
372
C
ZN
ZN
1_555
metalc
2.056
A
HIS
274
A
NE2
HIS
274
1_555
A
ZN
371
B
ZN
ZN
1_555
metalc
1.868
A
ZN
371
B
ZN
ZN
1_555
A
HOH
402
E
O
HOH
1_555
OXIDOREDUCTASE
Oxidoreductase, NAD, glycerol metabolism
GLDA_BACST
UNP
1
1
P32816
MAAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIAN
IARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIA
NAPPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANT
LLSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLSLDLPVTLEDIKLKDA
SREDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEKHRK
1
370
1JQ5
1
370
P32816
A
1
1
370
1
SER
engineered mutation
CYS
305
1JQ5
A
P32816
UNP
305
305
6
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LYS
12
A
LYS
12
A
GLY
16
A
GLY
16
A
LEU
151
A
LEU
151
A
ASP
155
A
ASP
155
A
TYR
112
A
TYR
112
A
PRO
117
A
PRO
117
A
ILE
89
A
ILE
89
A
GLY
94
A
GLY
94
A
LYS
33
A
LYS
33
A
ALA
38
A
ALA
38
A
ALA
60
A
ALA
60
A
VAL
65
A
VAL
65
A
LEU
129
A
LEU
129
A
TYR
133
A
TYR
133
A
PHE
139
A
PHE
139
A
PHE
144
A
PHE
144
BINDING SITE FOR RESIDUE ZN A 371
A
ZN
371
Software
4
BINDING SITE FOR RESIDUE ZN A 372
A
ZN
372
Software
4
BINDING SITE FOR RESIDUE NAD A 401
A
NAD
401
Software
28
A
ASP
173
A
ASP
173
4
1_555
A
HIS
256
A
HIS
256
4
1_555
A
HIS
274
A
HIS
274
4
1_555
A
HOH
402
E
HOH
4
1_555
A
GLU
268
A
GLU
268
4
1_555
A
GLU
268
A
GLU
268
4
16_555
A
HIS
271
A
HIS
271
4
16_555
A
HIS
271
A
HIS
271
4
1_555
A
ASP
39
A
ASP
39
28
1_555
A
ILE
45
A
ILE
45
28
1_555
A
GLY
95
A
GLY
95
28
1_555
A
GLY
96
A
GLY
96
28
1_555
A
LYS
97
A
LYS
97
28
1_555
A
ASP
100
A
ASP
100
28
1_555
A
THR
118
A
THR
118
28
1_555
A
SER
121
A
SER
121
28
1_555
A
THR
122
A
THR
122
28
1_555
A
ASP
123
A
ASP
123
28
1_555
A
ALA
124
A
ALA
124
28
1_555
A
SER
127
A
SER
127
28
1_555
A
LEU
129
A
LEU
129
28
1_555
A
VAL
131
A
VAL
131
28
1_555
A
TYR
133
A
TYR
133
28
1_555
A
ALA
162
A
ALA
162
28
1_555
A
PRO
163
A
PRO
163
28
1_555
A
LEU
166
A
LEU
166
28
1_555
A
PHE
247
A
PHE
247
28
1_555
A
HIS
274
A
HIS
274
28
1_555
A
HOH
405
E
HOH
28
1_555
A
HOH
406
E
HOH
28
1_555
A
HOH
408
E
HOH
28
1_555
A
HOH
410
E
HOH
28
1_555
A
HOH
411
E
HOH
28
1_555
A
HOH
412
E
HOH
28
1_555
A
HOH
413
E
HOH
28
1_555
A
HOH
414
E
HOH
28
1_555
97
I 4 2 2