0.006015
0.003473
0.000000
0.000000
0.006946
0.000000
0.000000
0.000000
0.012425
0.00000
0.00000
0.00000
Olsen, J.G.
Kadziola, A.
Lauritzen, C.
Pedersen, J.
Larsen, S.
Dahl, S.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
166.240
166.240
80.480
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
FEBS LETT.
FEBLAL
0165
0014-5793
506
201
206
10.1016/S0014-5793(01)02911-8
11602245
Tetrameric dipeptidyl peptidase I directs substrate specificity by use of the residual pro-part domain
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1998-04-20
MARRESEARCH
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
I711
MAX II
1.0
SYNCHROTRON
MAX II BEAMLINE I711
49866.277
dipeptidyl peptidase I
3.4.14.1
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
83
nat
water
cathepsin C
no
no
DTPANCTYPDLLGTWVFQVGPRHPRSHINCSVMEPTEEKVVIHLKKLDTAYDEVGNSGYFTLIYNQGFEIVLNDYKWFAF
FKYEVKGSRAISYCHETMTGWVHDVLGRNWACFVGKKMANHSEKVYVNVAHLGGLQEKYSERLYSHHHNFVKAINSVQKS
WTATTYRRYEKLSIRDLIRRSGHSGRILRPKPAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLG
MLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEY
YYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIV
KNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPIPKL
DTPANCTYPDLLGTWVFQVGPRHPRSHINCSVMEPTEEKVVIHLKKLDTAYDEVGNSGYFTLIYNQGFEIVLNDYKWFAF
FKYEVKGSRAISYCHETMTGWVHDVLGRNWACFVGKKMANHSEKVYVNVAHLGGLQEKYSERLYSHHHNFVKAINSVQKS
WTATTYRRYEKLSIRDLIRRSGHSGRILRPKPAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLG
MLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEY
YYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIV
KNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPIPKL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
fall armyworm
Spodoptera
sample
10116
Rattus norvegicus
7108
Spodoptera frugiperda
bacculo virus
1
3.22
61.77
VAPOR DIFFUSION, HANGING DROP
7.5
bis-tris, NaCl, dithiothreitol, EDTA, bis-tris propane, ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
diffrn_source
exptl_crystal_grow
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Data collection
Experimental preparation
Data collection
Database references
Derived calculations
Structure summary
1
0
2002-10-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-02-14
1
4
2020-07-29
_diffrn_source.pdbx_synchrotron_site
_exptl_crystal_grow.pdbx_details
_exptl_crystal_grow.temp
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_ref_seq_dif.details
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
PDBJ
2001-08-08
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
CL
CHLORIDE ION
SO4
SULFATE ION
HOH
water
NAG
501
2
NAG
NAG
501
A
NAG
502
2
NAG
NAG
502
A
CL
503
3
CL
CL
503
A
SO4
504
4
SO4
SO4
504
A
HOH
601
5
HOH
HOH
601
A
HOH
602
5
HOH
HOH
602
A
HOH
603
5
HOH
HOH
603
A
HOH
604
5
HOH
HOH
604
A
HOH
605
5
HOH
HOH
605
A
HOH
606
5
HOH
HOH
606
A
HOH
607
5
HOH
HOH
607
A
HOH
608
5
HOH
HOH
608
A
HOH
609
5
HOH
HOH
609
A
HOH
610
5
HOH
HOH
610
A
HOH
611
5
HOH
HOH
611
A
HOH
612
5
HOH
HOH
612
A
HOH
613
5
HOH
HOH
613
A
HOH
614
5
HOH
HOH
614
A
HOH
615
5
HOH
HOH
615
A
HOH
616
5
HOH
HOH
616
A
HOH
617
5
HOH
HOH
617
A
HOH
618
5
HOH
HOH
618
A
HOH
619
5
HOH
HOH
619
A
HOH
620
5
HOH
HOH
620
A
HOH
621
5
HOH
HOH
621
A
HOH
622
5
HOH
HOH
622
A
HOH
623
5
HOH
HOH
623
A
HOH
624
5
HOH
HOH
624
A
HOH
625
5
HOH
HOH
625
A
HOH
626
5
HOH
HOH
626
A
HOH
627
5
HOH
HOH
627
A
HOH
628
5
HOH
HOH
628
A
HOH
629
5
HOH
HOH
629
A
HOH
630
5
HOH
HOH
630
A
HOH
631
5
HOH
HOH
631
A
HOH
632
5
HOH
HOH
632
A
HOH
633
5
HOH
HOH
633
A
HOH
634
5
HOH
HOH
634
A
HOH
635
5
HOH
HOH
635
A
HOH
636
5
HOH
HOH
636
A
HOH
637
5
HOH
HOH
637
A
HOH
638
5
HOH
HOH
638
A
HOH
639
5
HOH
HOH
639
A
HOH
640
5
HOH
HOH
640
A
HOH
641
5
HOH
HOH
641
A
HOH
642
5
HOH
HOH
642
A
HOH
643
5
HOH
HOH
643
A
HOH
644
5
HOH
HOH
644
A
HOH
645
5
HOH
HOH
645
A
HOH
646
5
HOH
HOH
646
A
HOH
647
5
HOH
HOH
647
A
HOH
648
5
HOH
HOH
648
A
HOH
649
5
HOH
HOH
649
A
HOH
650
5
HOH
HOH
650
A
HOH
651
5
HOH
HOH
651
A
HOH
652
5
HOH
HOH
652
A
HOH
653
5
HOH
HOH
653
A
HOH
654
5
HOH
HOH
654
A
HOH
655
5
HOH
HOH
655
A
HOH
656
5
HOH
HOH
656
A
HOH
657
5
HOH
HOH
657
A
HOH
658
5
HOH
HOH
658
A
HOH
659
5
HOH
HOH
659
A
HOH
660
5
HOH
HOH
660
A
HOH
661
5
HOH
HOH
661
A
HOH
662
5
HOH
HOH
662
A
HOH
663
5
HOH
HOH
663
A
HOH
664
5
HOH
HOH
664
A
HOH
665
5
HOH
HOH
665
A
HOH
666
5
HOH
HOH
666
A
HOH
667
5
HOH
HOH
667
A
HOH
668
5
HOH
HOH
668
A
HOH
669
5
HOH
HOH
669
A
HOH
670
5
HOH
HOH
670
A
HOH
671
5
HOH
HOH
671
A
HOH
672
5
HOH
HOH
672
A
HOH
673
5
HOH
HOH
673
A
HOH
674
5
HOH
HOH
674
A
HOH
675
5
HOH
HOH
675
A
HOH
676
5
HOH
HOH
676
A
HOH
677
5
HOH
HOH
677
A
HOH
678
5
HOH
HOH
678
A
HOH
679
5
HOH
HOH
679
A
HOH
680
5
HOH
HOH
680
A
HOH
681
5
HOH
HOH
681
A
HOH
682
5
HOH
HOH
682
A
HOH
683
5
HOH
HOH
683
A
ASP
1
n
1
ASP
1
A
THR
2
n
2
THR
2
A
PRO
3
n
3
PRO
3
A
ALA
4
n
4
ALA
4
A
ASN
5
n
5
ASN
5
A
CYS
6
n
6
CYS
6
A
THR
7
n
7
THR
7
A
TYR
8
n
8
TYR
8
A
PRO
9
n
9
PRO
9
A
ASP
10
n
10
ASP
10
A
LEU
11
n
11
LEU
11
A
LEU
12
n
12
LEU
12
A
GLY
13
n
13
GLY
13
A
THR
14
n
14
THR
14
A
TRP
15
n
15
TRP
15
A
VAL
16
n
16
VAL
16
A
PHE
17
n
17
PHE
17
A
GLN
18
n
18
GLN
18
A
VAL
19
n
19
VAL
19
A
GLY
20
n
20
GLY
20
A
PRO
21
n
21
PRO
21
A
ARG
22
n
22
ARG
22
A
HIS
23
n
23
HIS
23
A
PRO
24
n
24
PRO
24
A
ARG
25
n
25
ARG
25
A
SER
26
n
26
SER
26
A
HIS
27
n
27
HIS
27
A
ILE
28
n
28
ILE
28
A
ASN
29
n
29
ASN
29
A
CYS
30
n
30
CYS
30
A
SER
31
n
31
SER
31
A
VAL
32
n
32
VAL
32
A
MET
33
n
33
MET
33
A
GLU
34
n
34
GLU
34
A
PRO
35
n
35
PRO
35
A
THR
36
n
36
THR
36
A
GLU
37
n
37
GLU
37
A
GLU
38
n
38
GLU
38
A
LYS
39
n
39
LYS
39
A
VAL
40
n
40
VAL
40
A
VAL
41
n
41
VAL
41
A
ILE
42
n
42
ILE
42
A
HIS
43
n
43
HIS
43
A
LEU
44
n
44
LEU
44
A
LYS
45
n
45
LYS
45
A
LYS
46
n
46
LYS
46
A
LEU
47
n
47
LEU
47
A
ASP
48
n
48
ASP
48
A
THR
49
n
49
THR
49
A
ALA
50
n
50
ALA
50
A
TYR
51
n
51
TYR
51
A
ASP
52
n
52
ASP
52
A
GLU
53
n
53
GLU
53
A
VAL
54
n
54
VAL
54
A
GLY
55
n
55
GLY
55
A
ASN
56
n
56
ASN
56
A
SER
57
n
57
SER
57
A
GLY
58
n
58
GLY
58
A
TYR
59
n
59
TYR
59
A
PHE
60
n
60
PHE
60
A
THR
61
n
61
THR
61
A
LEU
62
n
62
LEU
62
A
ILE
63
n
63
ILE
63
A
TYR
64
n
64
TYR
64
A
ASN
65
n
65
ASN
65
A
GLN
66
n
66
GLN
66
A
GLY
67
n
67
GLY
67
A
PHE
68
n
68
PHE
68
A
GLU
69
n
69
GLU
69
A
ILE
70
n
70
ILE
70
A
VAL
71
n
71
VAL
71
A
LEU
72
n
72
LEU
72
A
ASN
73
n
73
ASN
73
A
ASP
74
n
74
ASP
74
A
TYR
75
n
75
TYR
75
A
LYS
76
n
76
LYS
76
A
TRP
77
n
77
TRP
77
A
PHE
78
n
78
PHE
78
A
ALA
79
n
79
ALA
79
A
PHE
80
n
80
PHE
80
A
PHE
81
n
81
PHE
81
A
LYS
82
n
82
LYS
82
A
TYR
83
n
83
TYR
83
A
GLU
84
n
84
GLU
84
A
VAL
85
n
85
VAL
85
A
LYS
86
n
86
LYS
86
A
GLY
87
n
87
GLY
87
A
SER
88
n
88
SER
88
A
ARG
89
n
89
ARG
89
A
ALA
90
n
90
ALA
90
A
ILE
91
n
91
ILE
91
A
SER
92
n
92
SER
92
A
TYR
93
n
93
TYR
93
A
CYS
94
n
94
CYS
94
A
HIS
95
n
95
HIS
95
A
GLU
96
n
96
GLU
96
A
THR
97
n
97
THR
97
A
MET
98
n
98
MET
98
A
THR
99
n
99
THR
99
A
GLY
100
n
100
GLY
100
A
TRP
101
n
101
TRP
101
A
VAL
102
n
102
VAL
102
A
HIS
103
n
103
HIS
103
A
ASP
104
n
104
ASP
104
A
VAL
105
n
105
VAL
105
A
LEU
106
n
106
LEU
106
A
GLY
107
n
107
GLY
107
A
ARG
108
n
108
ARG
108
A
ASN
109
n
109
ASN
109
A
TRP
110
n
110
TRP
110
A
ALA
111
n
111
ALA
111
A
CYS
112
n
112
CYS
112
A
PHE
113
n
113
PHE
113
A
VAL
114
n
114
VAL
114
A
GLY
115
n
115
GLY
115
A
LYS
116
n
116
LYS
116
A
LYS
117
n
117
LYS
117
A
MET
118
n
118
MET
118
A
n
119
119
A
n
120
120
A
n
121
121
A
n
122
122
A
n
123
123
A
n
124
124
A
n
125
125
A
n
126
126
A
n
127
127
A
n
128
128
A
n
129
129
A
n
130
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
n
135
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
170
170
A
n
171
171
A
n
172
172
A
n
173
173
A
n
174
174
A
n
175
175
A
n
176
176
A
n
177
177
A
n
178
178
A
n
179
179
A
n
180
180
A
n
181
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
n
191
191
A
n
192
192
A
n
193
193
A
n
194
194
A
n
195
195
A
n
196
196
A
n
197
197
A
n
198
198
A
n
199
199
A
n
200
200
A
n
201
201
A
n
202
202
A
n
203
203
A
LEU
204
n
204
LEU
204
A
SER
205
n
205
SER
205
A
LEU
206
n
206
LEU
206
A
PRO
207
n
207
PRO
207
A
GLU
208
n
208
GLU
208
A
SER
209
n
209
SER
209
A
TRP
210
n
210
TRP
210
A
ASP
211
n
211
ASP
211
A
TRP
212
n
212
TRP
212
A
ARG
213
n
213
ARG
213
A
ASN
214
n
214
ASN
214
A
VAL
215
n
215
VAL
215
A
ARG
216
n
216
ARG
216
A
GLY
217
n
217
GLY
217
A
ILE
218
n
218
ILE
218
A
ASN
219
n
219
ASN
219
A
PHE
220
n
220
PHE
220
A
VAL
221
n
221
VAL
221
A
SER
222
n
222
SER
222
A
PRO
223
n
223
PRO
223
A
VAL
224
n
224
VAL
224
A
ARG
225
n
225
ARG
225
A
ASN
226
n
226
ASN
226
A
GLN
227
n
227
GLN
227
A
GLU
228
n
228
GLU
228
A
SER
229
n
229
SER
229
A
CYS
230
n
230
CYS
230
A
GLY
231
n
231
GLY
231
A
SER
232
n
232
SER
232
A
CYS
233
n
233
CYS
233
A
TYR
234
n
234
TYR
234
A
SER
235
n
235
SER
235
A
PHE
236
n
236
PHE
236
A
ALA
237
n
237
ALA
237
A
SER
238
n
238
SER
238
A
LEU
239
n
239
LEU
239
A
GLY
240
n
240
GLY
240
A
MET
241
n
241
MET
241
A
LEU
242
n
242
LEU
242
A
GLU
243
n
243
GLU
243
A
ALA
244
n
244
ALA
244
A
ARG
245
n
245
ARG
245
A
ILE
246
n
246
ILE
246
A
ARG
247
n
247
ARG
247
A
ILE
248
n
248
ILE
248
A
LEU
249
n
249
LEU
249
A
THR
250
n
250
THR
250
A
ASN
251
n
251
ASN
251
A
ASN
252
n
252
ASN
252
A
SER
253
n
253
SER
253
A
GLN
254
n
254
GLN
254
A
THR
255
n
255
THR
255
A
PRO
256
n
256
PRO
256
A
ILE
257
n
257
ILE
257
A
LEU
258
n
258
LEU
258
A
SER
259
n
259
SER
259
A
PRO
260
n
260
PRO
260
A
GLN
261
n
261
GLN
261
A
GLU
262
n
262
GLU
262
A
VAL
263
n
263
VAL
263
A
VAL
264
n
264
VAL
264
A
SER
265
n
265
SER
265
A
CYS
266
n
266
CYS
266
A
SER
267
n
267
SER
267
A
PRO
268
n
268
PRO
268
A
TYR
269
n
269
TYR
269
A
ALA
270
n
270
ALA
270
A
GLN
271
n
271
GLN
271
A
GLY
272
n
272
GLY
272
A
CYS
273
n
273
CYS
273
A
ASP
274
n
274
ASP
274
A
GLY
275
n
275
GLY
275
A
GLY
276
n
276
GLY
276
A
PHE
277
n
277
PHE
277
A
PRO
278
n
278
PRO
278
A
TYR
279
n
279
TYR
279
A
LEU
280
n
280
LEU
280
A
ILE
281
n
281
ILE
281
A
ALA
282
n
282
ALA
282
A
GLY
283
n
283
GLY
283
A
LYS
284
n
284
LYS
284
A
TYR
285
n
285
TYR
285
A
ALA
286
n
286
ALA
286
A
GLN
287
n
287
GLN
287
A
ASP
288
n
288
ASP
288
A
PHE
289
n
289
PHE
289
A
GLY
290
n
290
GLY
290
A
VAL
291
n
291
VAL
291
A
VAL
292
n
292
VAL
292
A
GLU
293
n
293
GLU
293
A
GLU
294
n
294
GLU
294
A
ASN
295
n
295
ASN
295
A
CYS
296
n
296
CYS
296
A
PHE
297
n
297
PHE
297
A
PRO
298
n
298
PRO
298
A
TYR
299
n
299
TYR
299
A
THR
300
n
300
THR
300
A
ALA
301
n
301
ALA
301
A
THR
302
n
302
THR
302
A
ASP
303
n
303
ASP
303
A
ALA
304
n
304
ALA
304
A
PRO
305
n
305
PRO
305
A
CYS
306
n
306
CYS
306
A
LYS
307
n
307
LYS
307
A
PRO
308
n
308
PRO
308
A
LYS
309
n
309
LYS
309
A
GLU
310
n
310
GLU
310
A
ASN
311
n
311
ASN
311
A
CYS
312
n
312
CYS
312
A
LEU
313
n
313
LEU
313
A
ARG
314
n
314
ARG
314
A
TYR
315
n
315
TYR
315
A
TYR
316
n
316
TYR
316
A
SER
317
n
317
SER
317
A
SER
318
n
318
SER
318
A
GLU
319
n
319
GLU
319
A
TYR
320
n
320
TYR
320
A
TYR
321
n
321
TYR
321
A
TYR
322
n
322
TYR
322
A
VAL
323
n
323
VAL
323
A
GLY
324
n
324
GLY
324
A
GLY
325
n
325
GLY
325
A
PHE
326
n
326
PHE
326
A
TYR
327
n
327
TYR
327
A
GLY
328
n
328
GLY
328
A
GLY
329
n
329
GLY
329
A
CYS
330
n
330
CYS
330
A
ASN
331
n
331
ASN
331
A
GLU
332
n
332
GLU
332
A
ALA
333
n
333
ALA
333
A
LEU
334
n
334
LEU
334
A
MET
335
n
335
MET
335
A
LYS
336
n
336
LYS
336
A
LEU
337
n
337
LEU
337
A
GLU
338
n
338
GLU
338
A
LEU
339
n
339
LEU
339
A
VAL
340
n
340
VAL
340
A
LYS
341
n
341
LYS
341
A
HIS
342
n
342
HIS
342
A
GLY
343
n
343
GLY
343
A
PRO
344
n
344
PRO
344
A
MET
345
n
345
MET
345
A
ALA
346
n
346
ALA
346
A
VAL
347
n
347
VAL
347
A
ALA
348
n
348
ALA
348
A
PHE
349
n
349
PHE
349
A
GLU
350
n
350
GLU
350
A
VAL
351
n
351
VAL
351
A
HIS
352
n
352
HIS
352
A
ASP
353
n
353
ASP
353
A
ASP
354
n
354
ASP
354
A
PHE
355
n
355
PHE
355
A
LEU
356
n
356
LEU
356
A
HIS
357
n
357
HIS
357
A
TYR
358
n
358
TYR
358
A
HIS
359
n
359
HIS
359
A
SER
360
n
360
SER
360
A
GLY
361
n
361
GLY
361
A
ILE
362
n
362
ILE
362
A
TYR
363
n
363
TYR
363
A
HIS
364
n
364
HIS
364
A
HIS
365
n
365
HIS
365
A
n
366
366
A
n
367
367
A
n
368
368
A
n
369
369
A
n
370
370
A
PRO
371
n
371
PRO
371
A
PHE
372
n
372
PHE
372
A
ASN
373
n
373
ASN
373
A
PRO
374
n
374
PRO
374
A
PHE
375
n
375
PHE
375
A
GLU
376
n
376
GLU
376
A
LEU
377
n
377
LEU
377
A
THR
378
n
378
THR
378
A
ASN
379
n
379
ASN
379
A
HIS
380
n
380
HIS
380
A
ALA
381
n
381
ALA
381
A
VAL
382
n
382
VAL
382
A
LEU
383
n
383
LEU
383
A
LEU
384
n
384
LEU
384
A
VAL
385
n
385
VAL
385
A
GLY
386
n
386
GLY
386
A
TYR
387
n
387
TYR
387
A
GLY
388
n
388
GLY
388
A
LYS
389
n
389
LYS
389
A
ASP
390
n
390
ASP
390
A
PRO
391
n
391
PRO
391
A
VAL
392
n
392
VAL
392
A
THR
393
n
393
THR
393
A
GLY
394
n
394
GLY
394
A
LEU
395
n
395
LEU
395
A
ASP
396
n
396
ASP
396
A
TYR
397
n
397
TYR
397
A
TRP
398
n
398
TRP
398
A
ILE
399
n
399
ILE
399
A
VAL
400
n
400
VAL
400
A
LYS
401
n
401
LYS
401
A
ASN
402
n
402
ASN
402
A
SER
403
n
403
SER
403
A
TRP
404
n
404
TRP
404
A
GLY
405
n
405
GLY
405
A
SER
406
n
406
SER
406
A
GLN
407
n
407
GLN
407
A
TRP
408
n
408
TRP
408
A
GLY
409
n
409
GLY
409
A
GLU
410
n
410
GLU
410
A
SER
411
n
411
SER
411
A
GLY
412
n
412
GLY
412
A
TYR
413
n
413
TYR
413
A
PHE
414
n
414
PHE
414
A
ARG
415
n
415
ARG
415
A
ILE
416
n
416
ILE
416
A
ARG
417
n
417
ARG
417
A
ARG
418
n
418
ARG
418
A
GLY
419
n
419
GLY
419
A
THR
420
n
420
THR
420
A
ASP
421
n
421
ASP
421
A
GLU
422
n
422
GLU
422
A
CYS
423
n
423
CYS
423
A
ALA
424
n
424
ALA
424
A
ILE
425
n
425
ILE
425
A
GLU
426
n
426
GLU
426
A
SER
427
n
427
SER
427
A
ILE
428
n
428
ILE
428
A
ALA
429
n
429
ALA
429
A
MET
430
n
430
MET
430
A
ALA
431
n
431
ALA
431
A
ALA
432
n
432
ALA
432
A
ILE
433
n
433
ILE
433
A
PRO
434
n
434
PRO
434
A
ILE
435
n
435
ILE
435
A
PRO
436
n
436
PRO
436
A
LYS
437
n
437
LYS
437
A
LEU
438
n
438
LEU
438
A
author_and_software_defined_assembly
PQS
4
tetrameric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
4030
-30
28380
2810
-25
29470
A
ASN
5
GLYCOSYLATION SITE
A
ASN
5
ASN
A
ASN
251
GLYCOSYLATION SITE
A
ASN
251
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_665
-x+1,-y+1,z
crystal symmetry operation
83.1200000000
143.9680631251
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_556
y,x,-z+4/3
crystal symmetry operation
0.0000000000
0.0000000000
107.3066666667
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_666
-y+1,-x+1,-z+4/3
crystal symmetry operation
83.1200000000
143.9680631251
107.3066666667
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_556
-x+y,y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
80.4800000000
A
N
VAL
19
A
N
VAL
19
A
O
GLU
38
A
O
GLU
38
A
N
LYS
45
A
N
LYS
45
A
O
THR
49
A
O
THR
49
A
O
ALA
50
A
O
ALA
50
A
N
GLY
58
A
N
GLY
58
A
N
ILE
63
A
N
ILE
63
A
O
GLY
67
A
O
GLY
67
A
N
LEU
72
A
N
LEU
72
A
O
TYR
75
A
O
TYR
75
A
N
LYS
86
A
N
LYS
86
A
O
ARG
89
A
O
ARG
89
A
N
THR
97
A
N
THR
97
A
O
GLY
115
A
O
GLY
115
A
O
LYS
116
A
O
LYS
116
A
N
VAL
16
A
N
VAL
16
A
N
GLN
18
A
N
GLN
18
A
O
VAL
114
A
O
VAL
114
A
O
PHE
113
A
O
PHE
113
A
N
GLY
100
A
N
GLY
100
A
O
HIS
103
A
O
HIS
103
A
N
LYS
76
A
N
LYS
76
A
O
TRP
210
A
O
TRP
210
A
N
TYR
387
A
N
TYR
387
A
N
LEU
384
A
N
LEU
384
A
O
MET
345
A
O
MET
345
A
N
PHE
349
A
N
PHE
349
A
O
HIS
380
A
O
HIS
380
A
O
GLY
388
A
O
GLY
388
A
N
TYR
397
A
N
TYR
397
A
N
VAL
400
A
N
VAL
400
A
O
PHE
414
A
O
PHE
414
A
O
ARG
415
A
O
ARG
415
A
N
TYR
363
A
N
TYR
363
A
O
VAL
291
A
O
VAL
291
A
N
TYR
315
A
N
TYR
315
A
O
TYR
321
A
O
TYR
321
A
N
ALA
431
A
N
ALA
431
1
A
CL
503
D
CL
1
A
ALA
119
A
ALA
119
1
Y
1
A
ASN
120
A
ASN
120
1
Y
1
A
HIS
121
A
HIS
121
1
Y
1
A
SER
122
A
SER
122
1
Y
1
A
GLU
123
A
GLU
123
1
Y
1
A
LYS
124
A
LYS
124
1
Y
1
A
VAL
125
A
VAL
125
1
Y
1
A
TYR
126
A
TYR
126
1
Y
1
A
VAL
127
A
VAL
127
1
Y
1
A
ASN
128
A
ASN
128
1
Y
1
A
VAL
129
A
VAL
129
1
Y
1
A
ALA
130
A
ALA
130
1
Y
1
A
HIS
131
A
HIS
131
1
Y
1
A
LEU
132
A
LEU
132
1
Y
1
A
GLY
133
A
GLY
133
1
Y
1
A
GLY
134
A
GLY
134
1
Y
1
A
LEU
135
A
LEU
135
1
Y
1
A
GLN
136
A
GLN
136
1
Y
1
A
GLU
137
A
GLU
137
1
Y
1
A
LYS
138
A
LYS
138
1
Y
1
A
TYR
139
A
TYR
139
1
Y
1
A
SER
140
A
SER
140
1
Y
1
A
GLU
141
A
GLU
141
1
Y
1
A
ARG
142
A
ARG
142
1
Y
1
A
LEU
143
A
LEU
143
1
Y
1
A
TYR
144
A
TYR
144
1
Y
1
A
SER
145
A
SER
145
1
Y
1
A
HIS
146
A
HIS
146
1
Y
1
A
HIS
147
A
HIS
147
1
Y
1
A
HIS
148
A
HIS
148
1
Y
1
A
ASN
149
A
ASN
149
1
Y
1
A
PHE
150
A
PHE
150
1
Y
1
A
VAL
151
A
VAL
151
1
Y
1
A
LYS
152
A
LYS
152
1
Y
1
A
ALA
153
A
ALA
153
1
Y
1
A
ILE
154
A
ILE
154
1
Y
1
A
ASN
155
A
ASN
155
1
Y
1
A
SER
156
A
SER
156
1
Y
1
A
VAL
157
A
VAL
157
1
Y
1
A
GLN
158
A
GLN
158
1
Y
1
A
LYS
159
A
LYS
159
1
Y
1
A
SER
160
A
SER
160
1
Y
1
A
TRP
161
A
TRP
161
1
Y
1
A
THR
162
A
THR
162
1
Y
1
A
ALA
163
A
ALA
163
1
Y
1
A
THR
164
A
THR
164
1
Y
1
A
THR
165
A
THR
165
1
Y
1
A
TYR
166
A
TYR
166
1
Y
1
A
ARG
167
A
ARG
167
1
Y
1
A
ARG
168
A
ARG
168
1
Y
1
A
TYR
169
A
TYR
169
1
Y
1
A
GLU
170
A
GLU
170
1
Y
1
A
LYS
171
A
LYS
171
1
Y
1
A
LEU
172
A
LEU
172
1
Y
1
A
SER
173
A
SER
173
1
Y
1
A
ILE
174
A
ILE
174
1
Y
1
A
ARG
175
A
ARG
175
1
Y
1
A
ASP
176
A
ASP
176
1
Y
1
A
LEU
177
A
LEU
177
1
Y
1
A
ILE
178
A
ILE
178
1
Y
1
A
ARG
179
A
ARG
179
1
Y
1
A
ARG
180
A
ARG
180
1
Y
1
A
SER
181
A
SER
181
1
Y
1
A
GLY
182
A
GLY
182
1
Y
1
A
HIS
183
A
HIS
183
1
Y
1
A
SER
184
A
SER
184
1
Y
1
A
GLY
185
A
GLY
185
1
Y
1
A
ARG
186
A
ARG
186
1
Y
1
A
ILE
187
A
ILE
187
1
Y
1
A
LEU
188
A
LEU
188
1
Y
1
A
ARG
189
A
ARG
189
1
Y
1
A
PRO
190
A
PRO
190
1
Y
1
A
LYS
191
A
LYS
191
1
Y
1
A
PRO
192
A
PRO
192
1
Y
1
A
ALA
193
A
ALA
193
1
Y
1
A
PRO
194
A
PRO
194
1
Y
1
A
ILE
195
A
ILE
195
1
Y
1
A
THR
196
A
THR
196
1
Y
1
A
ASP
197
A
ASP
197
1
Y
1
A
GLU
198
A
GLU
198
1
Y
1
A
ILE
199
A
ILE
199
1
Y
1
A
GLN
200
A
GLN
200
1
Y
1
A
GLN
201
A
GLN
201
1
Y
1
A
GLN
202
A
GLN
202
1
Y
1
A
ILE
203
A
ILE
203
1
Y
1
A
THR
366
A
THR
366
1
Y
1
A
GLY
367
A
GLY
367
1
Y
1
A
LEU
368
A
LEU
368
1
Y
1
A
SER
369
A
SER
369
1
Y
1
A
ASP
370
A
ASP
370
1
Y
1
A
ASP
48
-159.55
29.76
1
A
VAL
54
-105.49
41.04
1
A
TYR
64
53.54
-107.20
1
A
ARG
89
-117.95
-169.40
1
A
ASP
211
-160.85
107.89
1
A
ASN
214
-155.87
82.20
1
A
GLU
228
53.88
-130.60
1
A
SER
229
-96.83
58.19
1
A
ASN
251
49.17
29.82
1
A
ILE
281
-105.92
-65.26
1
A
PHE
297
-159.78
81.41
1
A
ASN
379
-147.57
13.48
1
A
VAL
392
-99.28
-67.87
1
A
ILE
428
-144.67
44.19
0.274
0.245
2.4
30.0
1303
26061
4.9998
94.2
1
2.4
30.0
83
2898
34
0
2781
2.4
30.0
1JQP
26061
0.071
1
13
99.2
0.322
2.4
1
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
dipeptidyl peptidase I(E.C.3.4.14.1)
dipeptidyl peptidase I (cathepsin C), a tetrameric cysteine protease of the papain family
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
THR
7
A
THR
7
HELX_P
A
LEU
12
A
LEU
12
1
1
6
A
SER
232
A
SER
232
HELX_P
A
THR
250
A
THR
250
1
2
19
A
SER
259
A
SER
259
HELX_P
A
SER
267
A
SER
267
1
3
9
A
GLN
271
A
GLN
271
HELX_P
A
CYS
273
A
CYS
273
5
4
3
A
PHE
277
A
PHE
277
HELX_P
A
ALA
282
A
ALA
282
1
5
6
A
GLY
283
A
GLY
283
HELX_P
A
PHE
289
A
PHE
289
1
6
7
A
GLU
294
A
GLU
294
HELX_P
A
PHE
297
A
PHE
297
5
7
4
A
ASN
331
A
ASN
331
HELX_P
A
GLY
343
A
GLY
343
1
8
13
A
HIS
352
A
HIS
352
HELX_P
A
HIS
357
A
HIS
357
1
9
6
A
ASP
421
A
ASP
421
HELX_P
A
ILE
425
A
ILE
425
5
10
5
disulf
2.031
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
94
A
SG
CYS
94
1_555
disulf
2.042
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
112
A
SG
CYS
112
1_555
disulf
2.028
A
CYS
230
A
SG
CYS
230
1_555
A
CYS
273
A
SG
CYS
273
1_555
disulf
2.041
A
CYS
266
A
SG
CYS
266
1_555
A
CYS
306
A
SG
CYS
306
1_555
disulf
2.031
A
CYS
296
A
SG
CYS
296
1_555
A
CYS
312
A
SG
CYS
312
1_555
covale
1.450
one
N-Glycosylation
A
ASN
5
A
ND2
ASN
5
1_555
A
NAG
501
B
C1
NAG
1_555
covale
1.455
one
N-Glycosylation
A
ASN
251
A
ND2
ASN
251
1_555
A
NAG
502
C
C1
NAG
1_555
HYDROLASE
cathepsin c, DPP I, papain, tetramer, chloride, cysteine protease, HYDROLASE
A
LYS
46
A
LYS
46
1
A
LEU
47
A
LEU
47
-0.27
CATC_RAT
UNP
1
25
P80067
DTPANCTYPDLLGTWVFQVGPRHPRSHINCSVMEPTEEKVVIHLKKLDTAYDEVGNSGYFTLIYNQGFEIVLNDYKWFAF
FKYEVKGSRAISYCHETMTGWVHDYLGRNWACFVGKKMANHSEKVYVNVAHLGGLQEKYSERLYSHHHNFVKAINSVQKS
WTATTYRRYEKLSIRDLIRRSGHSGRILRPKPAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASIG
MLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEY
YYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIV
KNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPIPKL
25
462
1JQP
1
438
P80067
A
1
1
438
1
TYR
conflict
VAL
105
1JQP
A
P80067
UNP
129
105
1
ILE
conflict
LEU
239
1JQP
A
P80067
UNP
263
239
12
7
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLY
13
A
GLY
13
A
VAL
19
A
VAL
19
A
GLU
38
A
GLU
38
A
LYS
45
A
LYS
45
A
THR
49
A
THR
49
A
TYR
51
A
TYR
51
A
SER
57
A
SER
57
A
ILE
63
A
ILE
63
A
GLY
67
A
GLY
67
A
LEU
72
A
LEU
72
A
TYR
75
A
TYR
75
A
LYS
86
A
LYS
86
A
ARG
89
A
ARG
89
A
THR
97
A
THR
97
A
TRP
110
A
TRP
110
A
LYS
117
A
LYS
117
A
GLY
13
A
GLY
13
A
VAL
19
A
VAL
19
A
TRP
110
A
TRP
110
A
LYS
117
A
LYS
117
A
GLY
100
A
GLY
100
A
ASP
104
A
ASP
104
A
TYR
75
A
TYR
75
A
LYS
86
A
LYS
86
A
TRP
210
A
TRP
210
A
ASP
211
A
ASP
211
A
HIS
380
A
HIS
380
A
LYS
389
A
LYS
389
A
MET
345
A
MET
345
A
PHE
349
A
PHE
349
A
HIS
380
A
HIS
380
A
LYS
389
A
LYS
389
A
ASP
396
A
ASP
396
A
LYS
401
A
LYS
401
A
TYR
413
A
TYR
413
A
ARG
417
A
ARG
417
A
ILE
362
A
ILE
362
A
TYR
363
A
TYR
363
A
VAL
291
A
VAL
291
A
VAL
292
A
VAL
292
A
ARG
314
A
ARG
314
A
TYR
322
A
TYR
322
A
MET
430
A
MET
430
A
ILE
435
A
ILE
435
181
P 64 2 2