1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Agrawal, R.K.
Linde, J.
Segupta, J.
Nierhaus, K.H.
Frank, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
N
329
N
O
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
777
787
10.1006/jmbi.2001.4907
11518530
Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
2001
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
97
491
502
10.1016/S0092-8674(00)80759-X
A Detailed View of a Ribosomal Active Site: The Structure of the L11-RNA Complex
1999
UK
Embo J.
EMJODG
0897
0261-4189
13
3661
3668
The Crystal Structure of Elongation Factor G Complexed with GDP, at 2.7A Resolution.
1994
UK
Embo J.
EMJODG
0897
0261-4189
13
3669
3677
Three-dimensional structure of the ribosomal translocase: Elongation factor G from Thermus thermophilus
1994
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
303
593
603
10.1006/jmbi.2000.4168
Structure of a Mutant EF-G Reveals Domain III and Possibly the Fusidic Acid Binding Site
2000
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
6
643
647
10.1038/10695
EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome
1999
10.2210/pdb1jqs/pdb
pdb_00001jqs
REFINEMENT PROTOCOL--MANUAL DETAILS--This structure was generated by fitting
the X-ray crystal structure of L11 and EF-G into the 70S E. coli EF-G (GTP
form) bound ribosome electron microscopy map. L11 (linker region between N and
C terminal) and EF-G positions of domains G and V were modeled to accommodate
the conformational changes. Conformational changes occur in protein L11 and
EF-G due to the binding of EF-G to the 70S ribosome. These changed
conformations were modeled based on the fitting of the crystal coordinates to
the low resolution ribosome map (factor-bound) and energy minimizing the fitted
structures.
OTHER
REAL
VISUAL AGREEMENT
1JQS
36113
18
FSC 0.5 CUT-OFF
POINT
E. coli 70S ribosome bound with EF-G and GMPPCP
0
RIBOSOME
PARTICLE
1
1
SINGLE PARTICLE
10
GENERIC FILM
1JQS
PERKIN ELMER
OTHER
FLOOD BEAM
FEI/PHILIPS EM420
BRIGHT FIELD
52000
GATAN LIQUID NITROGEN
1
36113
1JQS
C1
NO
NO
NO
YES
L11 from E. coli 70S ribosome modeled by crystal structure of L11 from Thermatogoma maritima
14865.637
50S Ribosomal protein L11
1
nat
polymer
EF-G from E. coli 70S ribosome modeled by crystal structure of EF-G from Thermus thermophilus
3599.001
Elongation Factor G
part of domain G'
1
nat
polymer
EF-G from E. coli 70S ribosome modeled by crystal structure of EF-G from Thermus thermophilus
7637.778
Elongation Factor G
domain V
1
nat
polymer
EF-G; translation elongation factor EF-G
EF-G; translation elongation factor EF-G
no
no
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
A
polypeptide(L)
no
no
AADFDENIMLKYLEGEEPTEEELVAAIRKGTI
AADFDENIMLKYLEGEEPTEEELVAAIRKGTI
B
polypeptide(L)
no
no
MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFF
MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFF
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
562
Escherichia coli
Escherichia
sample
562
Escherichia coli
Escherichia
sample
562
Escherichia coli
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2001-09-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
CA ATOMS ONLY
CA ATOMS ONLY
CA ATOMS ONLY
Fitting of Components with Known Structure Into An 11.5A Cryo-EM Map Of the E.coli
70s Ribosome
RCSB
Y
RCSB
2001-08-07
REL
This structure was generated by fitting the X-ray crystal structures
of L11 and EF-G into the 70S E. coli EF-G (GTP form) bound ribosome
map. L11(linker region between N and C terminal) and EF-G positions of
domains G' and V were modeled to accommodate the conformational
changes.
Conformational changes occur in protein L11 and EF-G due to the
binding of EF-G to the 70S ribosome. These changed conformations were
modeled based on the fitting of the crystal coordinates to the low
resolution ribosome map (factor-bound) and energy minimizing the
fitted structures.
Molecular Modeling based on crystal structures
Numerical Algorithms Group, Inc
data analysis
IRIS Explorer
3.5
Jones, Zou, Cowan, Kjeldgaard
data analysis
O
5.10
Frank
processing
SPIDER
4.48
Biosym/MSI Inc.
data analysis
Insight II
1998
n
1
-5
A
n
2
-4
A
n
3
-3
A
n
4
-2
A
n
5
-1
A
n
6
0
A
GLN
1
n
7
GLN
1
A
ILE
2
n
8
ILE
2
A
LYS
3
n
9
LYS
3
A
LEU
4
n
10
LEU
4
A
GLN
5
n
11
GLN
5
A
LEU
6
n
12
LEU
6
A
PRO
7
n
13
PRO
7
A
ALA
8
n
14
ALA
8
A
GLY
9
n
15
GLY
9
A
LYS
10
n
16
LYS
10
A
ALA
11
n
17
ALA
11
A
THR
12
n
18
THR
12
A
PRO
13
n
19
PRO
13
A
ALA
14
n
20
ALA
14
A
PRO
15
n
21
PRO
15
A
PRO
16
n
22
PRO
16
A
VAL
17
n
23
VAL
17
A
GLY
18
n
24
GLY
18
A
PRO
19
n
25
PRO
19
A
ALA
20
n
26
ALA
20
A
LEU
21
n
27
LEU
21
A
GLY
22
n
28
GLY
22
A
GLN
23
n
29
GLN
23
A
HIS
24
n
30
HIS
24
A
GLY
25
n
31
GLY
25
A
VAL
26
n
32
VAL
26
A
ASN
27
n
33
ASN
27
A
ILE
28
n
34
ILE
28
A
MET
29
n
35
MET
29
A
GLU
30
n
36
GLU
30
A
PHE
31
n
37
PHE
31
A
CYS
32
n
38
CYS
32
A
LYS
33
n
39
LYS
33
A
ARG
34
n
40
ARG
34
A
PHE
35
n
41
PHE
35
A
ASN
36
n
42
ASN
36
A
ALA
37
n
43
ALA
37
A
GLU
38
n
44
GLU
38
A
THR
39
n
45
THR
39
A
ALA
40
n
46
ALA
40
A
ASP
41
n
47
ASP
41
A
LYS
42
n
48
LYS
42
A
ALA
43
n
49
ALA
43
A
GLY
44
n
50
GLY
44
A
MET
45
n
51
MET
45
A
ILE
46
n
52
ILE
46
A
LEU
47
n
53
LEU
47
A
PRO
48
n
54
PRO
48
A
VAL
49
n
55
VAL
49
A
VAL
50
n
56
VAL
50
A
ILE
51
n
57
ILE
51
A
THR
52
n
58
THR
52
A
VAL
53
n
59
VAL
53
A
TYR
54
n
60
TYR
54
A
GLU
55
n
61
GLU
55
A
ASP
56
n
62
ASP
56
A
LYS
57
n
63
LYS
57
A
SER
58
n
64
SER
58
A
PHE
59
n
65
PHE
59
A
THR
60
n
66
THR
60
A
PHE
61
n
67
PHE
61
A
ILE
62
n
68
ILE
62
A
ILE
63
n
69
ILE
63
A
LYS
64
n
70
LYS
64
A
THR
65
n
71
THR
65
A
PRO
66
n
72
PRO
66
A
PRO
67
n
73
PRO
67
A
ALA
68
n
74
ALA
68
A
SER
69
n
75
SER
69
A
PHE
70
n
76
PHE
70
A
LEU
71
n
77
LEU
71
A
LEU
72
n
78
LEU
72
A
LYS
73
n
79
LYS
73
A
LYS
74
n
80
LYS
74
A
ALA
75
n
81
ALA
75
A
ALA
76
n
82
ALA
76
A
GLY
77
n
83
GLY
77
A
ILE
78
n
84
ILE
78
A
GLU
79
n
85
GLU
79
A
LYS
80
n
86
LYS
80
A
GLY
81
n
87
GLY
81
A
SER
82
n
88
SER
82
A
SER
83
n
89
SER
83
A
GLU
84
n
90
GLU
84
A
PRO
85
n
91
PRO
85
A
LYS
86
n
92
LYS
86
A
ARG
87
n
93
ARG
87
A
LYS
88
n
94
LYS
88
A
ILE
89
n
95
ILE
89
A
VAL
90
n
96
VAL
90
A
GLY
91
n
97
GLY
91
A
LYS
92
n
98
LYS
92
A
VAL
93
n
99
VAL
93
A
THR
94
n
100
THR
94
A
ARG
95
n
101
ARG
95
A
LYS
96
n
102
LYS
96
A
GLN
97
n
103
GLN
97
A
ILE
98
n
104
ILE
98
A
GLU
99
n
105
GLU
99
A
GLU
100
n
106
GLU
100
A
ILE
101
n
107
ILE
101
A
ALA
102
n
108
ALA
102
A
LYS
103
n
109
LYS
103
A
THR
104
n
110
THR
104
A
LYS
105
n
111
LYS
105
A
MET
106
n
112
MET
106
A
PRO
107
n
113
PRO
107
A
ASP
108
n
114
ASP
108
A
LEU
109
n
115
LEU
109
A
ASN
110
n
116
ASN
110
A
ALA
111
n
117
ALA
111
A
ASN
112
n
118
ASN
112
A
SER
113
n
119
SER
113
A
LEU
114
n
120
LEU
114
A
GLU
115
n
121
GLU
115
A
ALA
116
n
122
ALA
116
A
ALA
117
n
123
ALA
117
A
MET
118
n
124
MET
118
A
LYS
119
n
125
LYS
119
A
ILE
120
n
126
ILE
120
A
ILE
121
n
127
ILE
121
A
GLU
122
n
128
GLU
122
A
GLY
123
n
129
GLY
123
A
THR
124
n
130
THR
124
A
ALA
125
n
131
ALA
125
A
LYS
126
n
132
LYS
126
A
SER
127
n
133
SER
127
A
MET
128
n
134
MET
128
A
GLY
129
n
135
GLY
129
A
ILE
130
n
136
ILE
130
A
GLU
131
n
137
GLU
131
A
VAL
132
n
138
VAL
132
A
VAL
133
n
139
VAL
133
A
ALA
220
n
1
ALA
220
B
ALA
221
n
2
ALA
221
B
ASP
222
n
3
ASP
222
B
PHE
223
n
4
PHE
223
B
ASP
224
n
5
ASP
224
B
GLU
225
n
6
GLU
225
B
ASN
226
n
7
ASN
226
B
ILE
227
n
8
ILE
227
B
MET
228
n
9
MET
228
B
LEU
229
n
10
LEU
229
B
LYS
230
n
11
LYS
230
B
TYR
231
n
12
TYR
231
B
LEU
232
n
13
LEU
232
B
GLU
233
n
14
GLU
233
B
GLY
234
n
15
GLY
234
B
GLU
235
n
16
GLU
235
B
GLU
236
n
17
GLU
236
B
PRO
237
n
18
PRO
237
B
THR
238
n
19
THR
238
B
GLU
239
n
20
GLU
239
B
GLU
240
n
21
GLU
240
B
GLU
241
n
22
GLU
241
B
LEU
242
n
23
LEU
242
B
VAL
243
n
24
VAL
243
B
ALA
244
n
25
ALA
244
B
ALA
245
n
26
ALA
245
B
ILE
246
n
27
ILE
246
B
ARG
247
n
28
ARG
247
B
LYS
248
n
29
LYS
248
B
GLY
249
n
30
GLY
249
B
THR
250
n
31
THR
250
B
ILE
251
n
32
ILE
251
B
MET
606
n
1
MET
606
C
ARG
607
n
2
ARG
607
C
VAL
608
n
3
VAL
608
C
GLU
609
n
4
GLU
609
C
VAL
610
n
5
VAL
610
C
THR
611
n
6
THR
611
C
THR
612
n
7
THR
612
C
PRO
613
n
8
PRO
613
C
GLU
614
n
9
GLU
614
C
GLU
615
n
10
GLU
615
C
TYR
616
n
11
TYR
616
C
MET
617
n
12
MET
617
C
GLY
618
n
13
GLY
618
C
ASP
619
n
14
ASP
619
C
VAL
620
n
15
VAL
620
C
ILE
621
n
16
ILE
621
C
GLY
622
n
17
GLY
622
C
ASP
623
n
18
ASP
623
C
LEU
624
n
19
LEU
624
C
ASN
625
n
20
ASN
625
C
ALA
626
n
21
ALA
626
C
ARG
627
n
22
ARG
627
C
ARG
628
n
23
ARG
628
C
GLY
629
n
24
GLY
629
C
GLN
630
n
25
GLN
630
C
ILE
631
n
26
ILE
631
C
LEU
632
n
27
LEU
632
C
GLY
633
n
28
GLY
633
C
MET
634
n
29
MET
634
C
GLU
635
n
30
GLU
635
C
PRO
636
n
31
PRO
636
C
ARG
637
n
32
ARG
637
C
GLY
638
n
33
GLY
638
C
ASN
639
n
34
ASN
639
C
ALA
640
n
35
ALA
640
C
GLN
641
n
36
GLN
641
C
VAL
642
n
37
VAL
642
C
ILE
643
n
38
ILE
643
C
ARG
644
n
39
ARG
644
C
ALA
645
n
40
ALA
645
C
PHE
646
n
41
PHE
646
C
VAL
647
n
42
VAL
647
C
PRO
648
n
43
PRO
648
C
LEU
649
n
44
LEU
649
C
ALA
650
n
45
ALA
650
C
GLU
651
n
46
GLU
651
C
MET
652
n
47
MET
652
C
PHE
653
n
48
PHE
653
C
GLY
654
n
49
GLY
654
C
TYR
655
n
50
TYR
655
C
ALA
656
n
51
ALA
656
C
THR
657
n
52
THR
657
C
ASP
658
n
53
ASP
658
C
LEU
659
n
54
LEU
659
C
ARG
660
n
55
ARG
660
C
SER
661
n
56
SER
661
C
LYS
662
n
57
LYS
662
C
THR
663
n
58
THR
663
C
GLN
664
n
59
GLN
664
C
GLY
665
n
60
GLY
665
C
ARG
666
n
61
ARG
666
C
GLY
667
n
62
GLY
667
C
SER
668
n
63
SER
668
C
PHE
669
n
64
PHE
669
C
VAL
670
n
65
VAL
670
C
MET
671
n
66
MET
671
C
PHE
672
n
67
PHE
672
C
PHE
673
n
68
PHE
673
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ALA
-5
A
ALA
1
1
Y
1
A
LYS
-4
A
LYS
2
1
Y
1
A
LYS
-3
A
LYS
3
1
Y
1
A
VAL
-2
A
VAL
4
1
Y
1
A
ALA
-1
A
ALA
5
1
Y
1
A
ALA
0
A
ALA
6
1
Y
0
233
0
0
233
Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog
1
N
N
2
N
N
3
N
N
RIBOSOME
L11, EF-G, cryo-EM, 70S E.coli ribosome, GTP state, RIBOSOME
RL11_THEMA
UNP
1
1
P29395
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
EFG_THETH
UNP
2
220
P13551
AADFDENIMLKYLEGEEPTEEELVAAIRKGTI
EFG_THETH
UNP
3
606
P13551
MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFF
1
139
1JQS
-5
133
P29395
A
1
1
139
220
251
1JQS
220
251
P13551
B
2
1
32
606
673
1JQS
606
673
P13551
C
3
1
68