79.42
-42.081
20.743
-97.640
A
CA
GLN
1
ATOM
A
CA
GLN
1
7
1.00
1
C
80.39
-41.328
18.992
-94.315
A
CA
ILE
2
ATOM
A
CA
ILE
1
8
1.00
1
C
77.55
-43.428
18.055
-91.248
A
CA
LYS
3
ATOM
A
CA
LYS
1
9
1.00
1
C
77.13
-42.927
17.286
-87.530
A
CA
LEU
4
ATOM
A
CA
LEU
1
10
1.00
1
C
82.10
-44.926
16.517
-84.349
A
CA
GLN
5
ATOM
A
CA
GLN
1
11
1.00
1
C
79.90
-45.032
18.986
-81.432
A
CA
LEU
6
ATOM
A
CA
LEU
1
12
1.00
1
C
76.54
-47.315
19.580
-78.407
A
CA
PRO
7
ATOM
A
CA
PRO
1
13
1.00
1
C
82.83
-50.112
21.777
-79.805
A
CA
ALA
8
ATOM
A
CA
ALA
1
14
1.00
1
C
98.24
-50.496
25.043
-77.877
A
CA
GLY
9
ATOM
A
CA
GLY
1
15
1.00
1
C
98.41
-46.777
25.700
-77.216
A
CA
LYS
10
ATOM
A
CA
LYS
1
16
1.00
1
C
96.77
-43.328
25.781
-78.866
A
CA
ALA
11
ATOM
A
CA
ALA
1
17
1.00
1
C
98.62
-40.049
27.808
-78.528
A
CA
THR
12
ATOM
A
CA
THR
1
18
1.00
1
C
100.00
-37.434
25.244
-77.217
A
CA
PRO
13
ATOM
A
CA
PRO
1
19
1.00
1
C
100.00
-34.317
25.456
-79.409
A
CA
ALA
14
ATOM
A
CA
ALA
1
20
1.00
1
C
100.00
-33.210
21.754
-79.439
A
CA
PRO
15
ATOM
A
CA
PRO
1
21
1.00
1
C
100.00
-36.491
20.213
-80.823
A
CA
PRO
16
ATOM
A
CA
PRO
1
22
1.00
1
C
95.98
-37.707
23.145
-82.948
A
CA
VAL
17
ATOM
A
CA
VAL
1
23
1.00
1
C
94.07
-34.670
25.272
-83.957
A
CA
GLY
18
ATOM
A
CA
GLY
1
24
1.00
1
C
93.06
-32.472
23.072
-86.214
A
CA
PRO
19
ATOM
A
CA
PRO
1
25
1.00
1
C
96.04
-35.203
20.768
-87.591
A
CA
ALA
20
ATOM
A
CA
ALA
1
26
1.00
1
C
92.03
-37.252
23.259
-89.680
A
CA
LEU
21
ATOM
A
CA
LEU
1
27
1.00
1
C
88.78
-34.899
26.304
-89.482
A
CA
GLY
22
ATOM
A
CA
GLY
1
28
1.00
1
C
91.11
-32.445
24.722
-91.954
A
CA
GLN
23
ATOM
A
CA
GLN
1
29
1.00
1
C
94.53
-35.173
24.718
-94.671
A
CA
HIS
24
ATOM
A
CA
HIS
1
30
1.00
1
C
90.69
-35.537
28.540
-94.442
A
CA
GLY
25
ATOM
A
CA
GLY
1
31
1.00
1
C
90.50
-37.997
29.087
-91.567
A
CA
VAL
26
ATOM
A
CA
VAL
1
32
1.00
1
C
94.89
-38.134
32.002
-89.113
A
CA
ASN
27
ATOM
A
CA
ASN
1
33
1.00
1
C
97.32
-38.289
30.150
-85.761
A
CA
ILE
28
ATOM
A
CA
ILE
1
34
1.00
1
C
99.82
-39.944
32.921
-83.688
A
CA
MET
29
ATOM
A
CA
MET
1
35
1.00
1
C
92.68
-42.507
33.554
-86.466
A
CA
GLU
30
ATOM
A
CA
GLU
1
36
1.00
1
C
95.14
-43.293
29.801
-86.628
A
CA
PHE
31
ATOM
A
CA
PHE
1
37
1.00
1
C
95.64
-43.711
29.500
-82.835
A
CA
CYS
32
ATOM
A
CA
CYS
1
38
1.00
1
C
96.22
-46.059
32.526
-82.631
A
CA
LYS
33
ATOM
A
CA
LYS
1
39
1.00
1
C
89.97
-48.222
31.653
-85.670
A
CA
ARG
34
ATOM
A
CA
ARG
1
40
1.00
1
C
82.17
-48.384
27.970
-84.601
A
CA
PHE
35
ATOM
A
CA
PHE
1
41
1.00
1
C
86.52
-49.179
28.540
-80.884
A
CA
ASN
36
ATOM
A
CA
ASN
1
42
1.00
1
C
84.79
-51.922
31.111
-81.724
A
CA
ALA
37
ATOM
A
CA
ALA
1
43
1.00
1
C
90.10
-54.659
28.743
-83.015
A
CA
GLU
38
ATOM
A
CA
GLU
1
44
1.00
1
C
91.97
-53.206
25.535
-81.493
A
CA
THR
39
ATOM
A
CA
THR
1
45
1.00
1
C
93.30
-53.792
27.043
-78.005
A
CA
ALA
40
ATOM
A
CA
ALA
1
46
1.00
1
C
100.00
-57.419
25.936
-78.611
A
CA
ASP
41
ATOM
A
CA
ASP
1
47
1.00
1
C
99.10
-56.242
22.284
-78.898
A
CA
LYS
42
ATOM
A
CA
LYS
1
48
1.00
1
C
93.02
-53.467
22.597
-76.249
A
CA
ALA
43
ATOM
A
CA
ALA
1
49
1.00
1
C
90.09
-51.369
19.721
-74.850
A
CA
GLY
44
ATOM
A
CA
GLY
1
50
1.00
1
C
88.05
-52.190
17.163
-77.579
A
CA
MET
45
ATOM
A
CA
MET
1
51
1.00
1
C
76.40
-49.219
16.054
-79.727
A
CA
ILE
46
ATOM
A
CA
ILE
1
52
1.00
1
C
75.31
-49.964
16.337
-83.494
A
CA
LEU
47
ATOM
A
CA
LEU
1
53
1.00
1
C
73.63
-48.089
17.080
-86.790
A
CA
PRO
48
ATOM
A
CA
PRO
1
54
1.00
1
C
70.19
-47.775
20.440
-88.571
A
CA
VAL
49
ATOM
A
CA
VAL
1
55
1.00
1
C
73.93
-46.849
20.443
-92.291
A
CA
VAL
50
ATOM
A
CA
VAL
1
56
1.00
1
C
77.59
-44.222
23.175
-92.884
A
CA
ILE
51
ATOM
A
CA
ILE
1
57
1.00
1
C
82.77
-44.400
24.230
-96.572
A
CA
THR
52
ATOM
A
CA
THR
1
58
1.00
1
C
85.45
-41.343
26.482
-97.145
A
CA
VAL
53
ATOM
A
CA
VAL
1
59
1.00
1
C
88.03
-40.721
28.888
-100.079
A
CA
TYR
54
ATOM
A
CA
TYR
1
60
1.00
1
C
86.30
-37.713
30.296
-101.996
A
CA
GLU
55
ATOM
A
CA
GLU
1
61
1.00
1
C
83.65
-37.832
33.646
-100.088
A
CA
ASP
56
ATOM
A
CA
ASP
1
62
1.00
1
C
89.76
-37.459
31.772
-96.733
A
CA
LYS
57
ATOM
A
CA
LYS
1
63
1.00
1
C
87.60
-41.197
32.339
-96.105
A
CA
SER
58
ATOM
A
CA
SER
1
64
1.00
1
C
86.65
-43.366
29.397
-95.039
A
CA
PHE
59
ATOM
A
CA
PHE
1
65
1.00
1
C
79.66
-47.049
28.492
-94.541
A
CA
THR
60
ATOM
A
CA
THR
1
66
1.00
1
C
76.33
-48.522
25.379
-92.919
A
CA
PHE
61
ATOM
A
CA
PHE
1
67
1.00
1
C
70.90
-51.560
23.348
-91.835
A
CA
ILE
62
ATOM
A
CA
ILE
1
68
1.00
1
C
65.88
-52.142
21.388
-88.601
A
CA
ILE
63
ATOM
A
CA
ILE
1
69
1.00
1
C
49.56
-53.165
17.722
-89.130
A
CA
LYS
64
ATOM
A
CA
LYS
1
70
1.00
1
C
48.54
-54.742
15.348
-86.561
A
CA
THR
65
ATOM
A
CA
THR
1
71
1.00
1
C
39.98
-52.120
12.732
-87.597
A
CA
PRO
66
ATOM
A
CA
PRO
1
72
1.00
1
C
35.21
-51.269
9.518
-85.618
A
CA
PRO
67
ATOM
A
CA
PRO
1
73
1.00
1
C
29.59
-53.154
6.367
-86.696
A
CA
ALA
68
ATOM
A
CA
ALA
1
74
1.00
1
C
31.31
-53.434
5.750
-82.937
A
CA
SER
69
ATOM
A
CA
SER
1
75
1.00
1
C
34.16
-55.493
8.979
-82.465
A
CA
PHE
70
ATOM
A
CA
PHE
1
76
1.00
1
C
42.01
-57.807
7.953
-85.327
A
CA
LEU
71
ATOM
A
CA
LEU
1
77
1.00
1
C
34.91
-58.171
4.474
-83.715
A
CA
LEU
72
ATOM
A
CA
LEU
1
78
1.00
1
C
38.30
-58.923
5.921
-80.214
A
CA
LYS
73
ATOM
A
CA
LYS
1
79
1.00
1
C
38.23
-61.622
8.170
-81.730
A
CA
LYS
74
ATOM
A
CA
LYS
1
80
1.00
1
C
43.40
-62.958
5.342
-83.976
A
CA
ALA
75
ATOM
A
CA
ALA
1
81
1.00
1
C
44.61
-63.234
2.939
-80.998
A
CA
ALA
76
ATOM
A
CA
ALA
1
82
1.00
1
C
37.87
-64.894
5.793
-79.048
A
CA
GLY
77
ATOM
A
CA
GLY
1
83
1.00
1
C
37.65
-62.315
6.228
-76.254
A
CA
ILE
78
ATOM
A
CA
ILE
1
84
1.00
1
C
47.13
-60.180
9.223
-75.214
A
CA
GLU
79
ATOM
A
CA
GLU
1
85
1.00
1
C
38.76
-56.925
7.334
-74.445
A
CA
LYS
80
ATOM
A
CA
LYS
1
86
1.00
1
C
33.53
-55.385
3.888
-75.061
A
CA
GLY
81
ATOM
A
CA
GLY
1
87
1.00
1
C
31.79
-54.710
0.957
-72.697
A
CA
SER
82
ATOM
A
CA
SER
1
88
1.00
1
C
35.62
-52.305
1.299
-69.753
A
CA
SER
83
ATOM
A
CA
SER
1
89
1.00
1
C
38.55
-51.229
-2.275
-70.634
A
CA
GLU
84
ATOM
A
CA
GLU
1
90
1.00
1
C
37.71
-52.225
-3.226
-74.245
A
CA
PRO
85
ATOM
A
CA
PRO
1
91
1.00
1
C
36.65
-53.191
-6.897
-74.940
A
CA
LYS
86
ATOM
A
CA
LYS
1
92
1.00
1
C
29.80
-53.416
-7.672
-71.181
A
CA
ARG
87
ATOM
A
CA
ARG
1
93
1.00
1
C
30.94
-56.053
-4.917
-70.810
A
CA
LYS
88
ATOM
A
CA
LYS
1
94
1.00
1
C
31.34
-58.410
-4.120
-73.726
A
CA
ILE
89
ATOM
A
CA
ILE
1
95
1.00
1
C
29.74
-59.986
-0.621
-73.756
A
CA
VAL
90
ATOM
A
CA
VAL
1
96
1.00
1
C
35.16
-62.047
-0.913
-76.966
A
CA
GLY
91
ATOM
A
CA
GLY
1
97
1.00
1
C
40.57
-62.266
-2.258
-80.523
A
CA
LYS
92
ATOM
A
CA
LYS
1
98
1.00
1
C
41.33
-62.966
-1.146
-84.115
A
CA
VAL
93
ATOM
A
CA
VAL
1
99
1.00
1
C
42.43
-64.468
-2.958
-87.118
A
CA
THR
94
ATOM
A
CA
THR
1
100
1.00
1
C
49.44
-62.337
-4.108
-90.084
A
CA
ARG
95
ATOM
A
CA
ARG
1
101
1.00
1
C
51.76
-64.509
-1.588
-91.994
A
CA
LYS
96
ATOM
A
CA
LYS
1
102
1.00
1
C
44.08
-63.254
1.247
-89.726
A
CA
GLN
97
ATOM
A
CA
GLN
1
103
1.00
1
C
35.57
-59.701
-0.083
-90.320
A
CA
ILE
98
ATOM
A
CA
ILE
1
104
1.00
1
C
53.52
-60.430
0.159
-94.097
A
CA
GLU
99
ATOM
A
CA
GLU
1
105
1.00
1
C
52.07
-61.686
3.764
-93.671
A
CA
GLU
100
ATOM
A
CA
GLU
1
106
1.00
1
C
39.41
-58.611
4.875
-91.644
A
CA
ILE
101
ATOM
A
CA
ILE
1
107
1.00
1
C
42.41
-56.279
3.143
-94.147
A
CA
ALA
102
ATOM
A
CA
ALA
1
108
1.00
1
C
44.59
-58.123
4.990
-96.967
A
CA
LYS
103
ATOM
A
CA
LYS
1
109
1.00
1
C
42.63
-57.734
8.397
-95.237
A
CA
THR
104
ATOM
A
CA
THR
1
110
1.00
1
C
42.77
-53.929
7.977
-94.868
A
CA
LYS
105
ATOM
A
CA
LYS
1
111
1.00
1
C
41.26
-53.374
5.913
-98.072
A
CA
MET
106
ATOM
A
CA
MET
1
112
1.00
1
C
29.51
-50.578
8.191
-99.490
A
CA
PRO
107
ATOM
A
CA
PRO
1
113
1.00
1
C
36.41
-48.839
8.352
-96.060
A
CA
ASP
108
ATOM
A
CA
ASP
1
114
1.00
1
C
33.57
-48.761
4.556
-95.601
A
CA
LEU
109
ATOM
A
CA
LEU
1
115
1.00
1
C
33.28
-46.001
2.943
-97.732
A
CA
ASN
110
ATOM
A
CA
ASN
1
116
1.00
1
C
41.18
-48.285
-0.128
-98.319
A
CA
ALA
111
ATOM
A
CA
ALA
1
117
1.00
1
C
42.41
-48.564
-1.345
-101.940
A
CA
ASN
112
ATOM
A
CA
ASN
1
118
1.00
1
C
43.86
-51.994
-2.960
-101.399
A
CA
SER
113
ATOM
A
CA
SER
1
119
1.00
1
C
44.83
-55.189
-2.054
-99.515
A
CA
LEU
114
ATOM
A
CA
LEU
1
120
1.00
1
C
47.46
-54.653
-5.263
-97.486
A
CA
GLU
115
ATOM
A
CA
GLU
1
121
1.00
1
C
38.97
-51.146
-4.074
-96.531
A
CA
ALA
116
ATOM
A
CA
ALA
1
122
1.00
1
C
36.26
-52.456
-0.562
-95.714
A
CA
ALA
117
ATOM
A
CA
ALA
1
123
1.00
1
C
34.84
-55.105
-1.998
-93.353
A
CA
MET
118
ATOM
A
CA
MET
1
124
1.00
1
C
28.15
-52.531
-4.380
-91.786
A
CA
LYS
119
ATOM
A
CA
LYS
1
125
1.00
1
C
29.89
-50.283
-1.391
-90.853
A
CA
ILE
120
ATOM
A
CA
ILE
1
126
1.00
1
C
27.70
-53.219
0.209
-88.965
A
CA
ILE
121
ATOM
A
CA
ILE
1
127
1.00
1
C
28.43
-53.976
-3.199
-87.346
A
CA
GLU
122
ATOM
A
CA
GLU
1
128
1.00
1
C
21.91
-50.325
-3.151
-86.174
A
CA
GLY
123
ATOM
A
CA
GLY
1
129
1.00
1
C
25.94
-51.047
0.162
-84.391
A
CA
THR
124
ATOM
A
CA
THR
1
130
1.00
1
C
26.64
-54.421
-1.092
-83.024
A
CA
ALA
125
ATOM
A
CA
ALA
1
131
1.00
1
C
27.21
-52.768
-4.134
-81.373
A
CA
LYS
126
ATOM
A
CA
LYS
1
132
1.00
1
C
33.04
-50.179
-2.029
-79.450
A
CA
SER
127
ATOM
A
CA
SER
1
133
1.00
1
C
25.82
-52.904
0.073
-77.730
A
CA
MET
128
ATOM
A
CA
MET
1
134
1.00
1
C
22.84
-55.596
-2.486
-76.700
A
CA
GLY
129
ATOM
A
CA
GLY
1
135
1.00
1
C
29.45
-58.007
-1.787
-79.595
A
CA
ILE
130
ATOM
A
CA
ILE
1
136
1.00
1
C
39.24
-59.141
-5.125
-81.090
A
CA
GLU
131
ATOM
A
CA
GLU
1
137
1.00
1
C
52.55
-60.391
-5.716
-84.667
A
CA
VAL
132
ATOM
A
CA
VAL
1
138
1.00
1
C
58.40
-63.906
-7.083
-85.412
A
CA
VAL
133
ATOM
A
CA
VAL
1
139
1.00
1
C
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Agrawal, R.K.
Linde, J.
Segupta, J.
Nierhaus, K.H.
Frank, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
N
329
N
O
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
777
787
10.1006/jmbi.2001.4907
11518530
Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
2001
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
97
491
502
10.1016/S0092-8674(00)80759-X
A Detailed View of a Ribosomal Active Site: The Structure of the L11-RNA Complex
1999
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
100
537
549
10.1016/S0092-8674(00)80690-X
EF-G-dependent GTP hydrolysis induces solution structure of the E. coli 70S ribosome at 11.5A resolution
2000
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
6
643
647
10.1038/10695
EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome
1999
10.2210/pdb1jqt/pdb
pdb_00001jqt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
REFINEMENT PROTOCOL--MANUAL DETAILS--This structure was generated by fitting
the X-ray crystal structure of L11 into the 70S E. coli ribosome map. L11
(linker region between N and C terminal) was modeled to accommodate the
observed densities. Conformational changes occur in protein L11 and EF-G due to
the binding of EF-G to the 70S ribosome. These changed conformations were
modeled based on the fitting of the crystal coordinates to the low resolution
ribosome map (factor-bound) and energy minimizing the fitted structures.
OTHER
REAL
VISUAL AGREEMENT
1JQT
36113
18
FSC 0.5 CUT-OFF
POINT
70S ribosome
0
RIBOSOME
PARTICLE
1
1
SINGLE PARTICLE
10
GENERIC FILM
OTHER
FLOOD BEAM
FEI/PHILIPS EM420
BRIGHT FIELD
52000
GATAN LIQUID NITROGEN
1
1JQT
C1
NO
NO
NO
YES
L11 from E. coli 70S ribosome modeled by crystal structure of L11 from Thermatogoma maritima
14865.637
50S Ribosomal protein L11
1
nat
polymer
no
no
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
562
Escherichia coli
chem_comp_atom
chem_comp_bond
database_2
em_image_scans
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2001-09-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
CA ATOMS ONLY
Fitting of Components with Known Structure Into An 11.5A Cryo-EM Map Of the
E.coli 70s Ribosome
RCSB
Y
RCSB
2001-08-07
REL
This structure was generated by fitting the X-ray crystal structure of
L11 into the 70S E. coli ribosome map. L11 (linker region between N and
C terminal) was modeled to accommodate the observed densities.
Conformational changes occur in protein L11 when it is bound to 70S
ribosome. This changed conformation was modeled based on the fitting
of the crystal coordinates to the low resolution ribosome map and
energy minimizing the fitted structures.
Molecular Modeling based on crystal structures
Numerical Algorithms Group, Inc
data analysis
IRIS Explorer
3.5
Jones, Zou, Cowan, Kjeldgaard
data analysis
O
5.10
Frank
processing
SPIDER
4.48
Biosym/MSI Inc.
data analysis
Insight II
1998
n
1
-5
A
n
2
-4
A
n
3
-3
A
n
4
-2
A
n
5
-1
A
n
6
0
A
GLN
1
n
7
GLN
1
A
ILE
2
n
8
ILE
2
A
LYS
3
n
9
LYS
3
A
LEU
4
n
10
LEU
4
A
GLN
5
n
11
GLN
5
A
LEU
6
n
12
LEU
6
A
PRO
7
n
13
PRO
7
A
ALA
8
n
14
ALA
8
A
GLY
9
n
15
GLY
9
A
LYS
10
n
16
LYS
10
A
ALA
11
n
17
ALA
11
A
THR
12
n
18
THR
12
A
PRO
13
n
19
PRO
13
A
ALA
14
n
20
ALA
14
A
PRO
15
n
21
PRO
15
A
PRO
16
n
22
PRO
16
A
VAL
17
n
23
VAL
17
A
GLY
18
n
24
GLY
18
A
PRO
19
n
25
PRO
19
A
ALA
20
n
26
ALA
20
A
LEU
21
n
27
LEU
21
A
GLY
22
n
28
GLY
22
A
GLN
23
n
29
GLN
23
A
HIS
24
n
30
HIS
24
A
GLY
25
n
31
GLY
25
A
VAL
26
n
32
VAL
26
A
ASN
27
n
33
ASN
27
A
ILE
28
n
34
ILE
28
A
MET
29
n
35
MET
29
A
GLU
30
n
36
GLU
30
A
PHE
31
n
37
PHE
31
A
CYS
32
n
38
CYS
32
A
LYS
33
n
39
LYS
33
A
ARG
34
n
40
ARG
34
A
PHE
35
n
41
PHE
35
A
ASN
36
n
42
ASN
36
A
ALA
37
n
43
ALA
37
A
GLU
38
n
44
GLU
38
A
THR
39
n
45
THR
39
A
ALA
40
n
46
ALA
40
A
ASP
41
n
47
ASP
41
A
LYS
42
n
48
LYS
42
A
ALA
43
n
49
ALA
43
A
GLY
44
n
50
GLY
44
A
MET
45
n
51
MET
45
A
ILE
46
n
52
ILE
46
A
LEU
47
n
53
LEU
47
A
PRO
48
n
54
PRO
48
A
VAL
49
n
55
VAL
49
A
VAL
50
n
56
VAL
50
A
ILE
51
n
57
ILE
51
A
THR
52
n
58
THR
52
A
VAL
53
n
59
VAL
53
A
TYR
54
n
60
TYR
54
A
GLU
55
n
61
GLU
55
A
ASP
56
n
62
ASP
56
A
LYS
57
n
63
LYS
57
A
SER
58
n
64
SER
58
A
PHE
59
n
65
PHE
59
A
THR
60
n
66
THR
60
A
PHE
61
n
67
PHE
61
A
ILE
62
n
68
ILE
62
A
ILE
63
n
69
ILE
63
A
LYS
64
n
70
LYS
64
A
THR
65
n
71
THR
65
A
PRO
66
n
72
PRO
66
A
PRO
67
n
73
PRO
67
A
ALA
68
n
74
ALA
68
A
SER
69
n
75
SER
69
A
PHE
70
n
76
PHE
70
A
LEU
71
n
77
LEU
71
A
LEU
72
n
78
LEU
72
A
LYS
73
n
79
LYS
73
A
LYS
74
n
80
LYS
74
A
ALA
75
n
81
ALA
75
A
ALA
76
n
82
ALA
76
A
GLY
77
n
83
GLY
77
A
ILE
78
n
84
ILE
78
A
GLU
79
n
85
GLU
79
A
LYS
80
n
86
LYS
80
A
GLY
81
n
87
GLY
81
A
SER
82
n
88
SER
82
A
SER
83
n
89
SER
83
A
GLU
84
n
90
GLU
84
A
PRO
85
n
91
PRO
85
A
LYS
86
n
92
LYS
86
A
ARG
87
n
93
ARG
87
A
LYS
88
n
94
LYS
88
A
ILE
89
n
95
ILE
89
A
VAL
90
n
96
VAL
90
A
GLY
91
n
97
GLY
91
A
LYS
92
n
98
LYS
92
A
VAL
93
n
99
VAL
93
A
THR
94
n
100
THR
94
A
ARG
95
n
101
ARG
95
A
LYS
96
n
102
LYS
96
A
GLN
97
n
103
GLN
97
A
ILE
98
n
104
ILE
98
A
GLU
99
n
105
GLU
99
A
GLU
100
n
106
GLU
100
A
ILE
101
n
107
ILE
101
A
ALA
102
n
108
ALA
102
A
LYS
103
n
109
LYS
103
A
THR
104
n
110
THR
104
A
LYS
105
n
111
LYS
105
A
MET
106
n
112
MET
106
A
PRO
107
n
113
PRO
107
A
ASP
108
n
114
ASP
108
A
LEU
109
n
115
LEU
109
A
ASN
110
n
116
ASN
110
A
ALA
111
n
117
ALA
111
A
ASN
112
n
118
ASN
112
A
SER
113
n
119
SER
113
A
LEU
114
n
120
LEU
114
A
GLU
115
n
121
GLU
115
A
ALA
116
n
122
ALA
116
A
ALA
117
n
123
ALA
117
A
MET
118
n
124
MET
118
A
LYS
119
n
125
LYS
119
A
ILE
120
n
126
ILE
120
A
ILE
121
n
127
ILE
121
A
GLU
122
n
128
GLU
122
A
GLY
123
n
129
GLY
123
A
THR
124
n
130
THR
124
A
ALA
125
n
131
ALA
125
A
LYS
126
n
132
LYS
126
A
SER
127
n
133
SER
127
A
MET
128
n
134
MET
128
A
GLY
129
n
135
GLY
129
A
ILE
130
n
136
ILE
130
A
GLU
131
n
137
GLU
131
A
VAL
132
n
138
VAL
132
A
VAL
133
n
139
VAL
133
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ALA
-5
A
ALA
1
1
Y
1
A
LYS
-4
A
LYS
2
1
Y
1
A
LYS
-3
A
LYS
3
1
Y
1
A
VAL
-2
A
VAL
4
1
Y
1
A
ALA
-1
A
ALA
5
1
Y
1
A
ALA
0
A
ALA
6
1
Y
0
133
0
0
133
Fitting of L11 protein in the low resolution cryo-EM map of E.coli 70S ribosome
1
N
N
RIBOSOME
L11, cryo-EM, 70S E.coli ribosome, RIBOSOME
RL11_THEMA
UNP
1
1
P29395
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK
AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
1
139
1JQT
-5
133
P29395
A
1
1
139