1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Gollmick, F.A.
Lorenz, M.
Dornberger, U.
von Langen, J.
Diekmann, S.
Fritzsche, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H13 N2 O8 P
308.182
y
2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
30
2669
2677
10.1093/nar/gkf375
12060684
Solution structure of dAATAA and dAAUAA DNA bulges.
2002
10.2210/pdb1js7/pdb
pdb_00001js7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
5206.386
5'-D(*GP*CP*AP*TP*CP*GP*AP*AP*UP*AP*AP*GP*CP*TP*AP*CP*G)-3'
1
syn
polymer
3663.392
5'-D(*CP*GP*TP*AP*GP*CP*CP*GP*AP*TP*GP*C)-3'
1
syn
polymer
no
no
(DG)(DC)(DA)(DT)(DC)(DG)(DA)(DA)(DU)(DA)(DA)(DG)(DC)(DT)(DA)(DC)(DG)
GCATCGAAUAAGCTACG
A
polydeoxyribonucleotide
no
no
(DC)(DG)(DT)(DA)(DG)(DC)(DC)(DG)(DA)(DT)(DG)(DC)
CGTAGCCGATGC
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-13.240
1
19
A
1
B
29
-2.686
A_DG1:DC29_B
1
-4.380
-0.726
0.006
-0.185
0.342
1
19
A
2
B
28
-2.476
A_DC2:DG28_B
2
-6.944
-0.096
0.506
-0.070
2.326
1
20
A
3
B
27
-3.741
A_DA3:DT27_B
3
-17.136
-0.314
0.017
-0.084
-0.434
1
20
A
4
B
26
-5.545
A_DT4:DA26_B
4
-22.645
0.195
-0.069
-0.068
-5.754
1
19
A
5
B
25
-2.103
A_DC5:DG25_B
5
-17.534
0.766
0.239
-0.286
-6.535
1
19
A
6
B
24
-5.637
A_DG6:DC24_B
6
-12.022
0.319
0.214
-0.038
8.374
1
19
A
12
B
23
-2.147
A_DG12:DC23_B
7
2.013
-0.959
0.568
-0.311
8.125
1
19
A
13
B
22
-4.967
A_DC13:DG22_B
8
-11.838
-0.311
0.570
-0.098
14.921
1
20
A
14
B
21
-5.693
A_DT14:DA21_B
9
-22.869
0.183
-0.078
-0.084
8.067
1
20
A
15
B
20
-6.726
A_DA15:DT20_B
10
-18.006
-0.229
0.262
-0.067
-1.581
1
19
A
16
B
19
-3.667
A_DC16:DG19_B
11
-16.801
0.408
0.416
-0.136
2.879
33.549
A
A
1
2
2.378
B
B
29
28
2.921
1.367
-0.063
-0.474
AA_DG1DC2:DG28DC29_BB
1
-4.914
8.544
33.170
-1.021
-0.610
2.465
31.211
A
A
2
3
20.542
B
B
28
27
2.929
10.824
-0.474
-0.742
AA_DC2DA3:DT27DG28_BB
2
2.158
-4.095
29.240
-3.133
1.231
3.082
35.228
A
A
3
4
5.187
B
B
27
26
3.166
3.135
-0.375
-0.806
AA_DA3DT4:DA26DT27_BB
3
0.253
-0.419
35.092
-1.778
0.656
3.121
37.865
A
A
4
5
10.060
B
B
26
25
3.214
6.498
0.581
-0.295
AA_DT4DC5:DG25DA26_BB
4
-0.018
0.028
37.323
-1.267
-0.898
2.455
29.801
A
A
5
6
22.922
B
B
25
24
2.985
11.481
0.117
-0.813
AA_DC5DG6:DC24DG25_BB
5
2.559
-5.110
27.430
-3.660
0.235
3.336
35.279
A
A
12
13
1.223
B
B
23
22
3.283
0.740
-1.097
-0.970
AA_DG12DC13:DG22DC23_BB
6
-2.741
4.528
35.168
-1.712
1.399
2.917
34.290
A
A
13
14
1.988
B
B
22
21
2.980
1.171
-0.615
-0.466
AA_DC13DT14:DA21DG22_BB
7
2.292
-3.891
34.196
-0.956
1.367
3.194
35.824
A
A
14
15
23.735
B
B
21
20
3.347
14.211
-0.468
0.214
AA_DT14DA15:DT20DA21_BB
8
-2.483
4.147
32.879
-1.788
0.387
3.369
37.850
A
A
15
16
4.357
B
B
20
19
3.405
2.824
0.145
-0.321
AA_DA15DC16:DG19DT20_BB
9
-0.792
1.223
37.740
-0.870
-0.330
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-06-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
1QSK contains a similar pentanucleotideDNA bulge with AAAAA in the bulge loop
1JRV contains a similar pentanucleotideDNA bulge with AATAA in the bulge loop
1JRW is the average SOLUTION STRUCTURE OF DAATAA DNA BULGE
1JS5 IS THE average SOLUTION STRUCTURE OF DAAUAA DNA BULGE
RCSB
Y
RCSB
2001-08-16
REL
This structure was determined using standard 2D homonuclear and heteronuclear techniques.
target function
400
15
2D_NOESY
E-COSY
31P-1H_heteronuclear_correlated
100mm Na+
7
ambient
300
K
100mm Na+
7
ambient
300
K
the structures are based on a total of 932 restraints, 671 are NOE-derived
distance constraints, 235 dihedral angle restraints, 26 distance restraints
from hydrogen bonds.
matrix relaxation, torsion angle dynamics, ENERGY MINIMIZATION
3.8mm in duplex; 10mm phosphate buffer; 100 mm NaCl; 0.05mm EDTA, 100% D2O
100% D2O
3.8mm in duplex; 100 mm NaCl; 0.05mm EDTA, 100% D2O
100% D2O
Delaglio et al.
processing
NMRPipe
3
Borgias, B.A., James, T.L.
iterative matrix relaxation
MARDIGRAS
3.2
Guentert, P., Mumenthaler, C., Wuetrich, K.
structure solution
DYANA
1.5
Weiner, S.j., Kollman, P.A., Nguyen, D.T., Case, D.A.
refinement
Amber
5.0
Weiner, S.j., Kollman, P.A., Nguyen, D.T., Case, D.A.
data analysis
Amber
5.0
500
Varian
INOVA
600
Varian
INOVA
750
Varian
INOVA
GUA
1
n
1
DG
1
A
CYT
2
n
2
DC
2
A
ADE
3
n
3
DA
3
A
THY
4
n
4
DT
4
A
CYT
5
n
5
DC
5
A
GUA
6
n
6
DG
6
A
ADE
7
n
7
DA
7
A
ADE
8
n
8
DA
8
A
URA
9
n
9
DU
9
A
ADE
10
n
10
DA
10
A
ADE
11
n
11
DA
11
A
GUA
12
n
12
DG
12
A
CYT
13
n
13
DC
13
A
THY
14
n
14
DT
14
A
ADE
15
n
15
DA
15
A
CYT
16
n
16
DC
16
A
GUA
17
n
17
DG
17
A
CYT
18
n
1
DC
18
B
GUA
19
n
2
DG
19
B
THY
20
n
3
DT
20
B
ADE
21
n
4
DA
21
B
GUA
22
n
5
DG
22
B
CYT
23
n
6
DC
23
B
CYT
24
n
7
DC
24
B
GUA
25
n
8
DG
25
B
ADE
26
n
9
DA
26
B
THY
27
n
10
DT
27
B
GUA
28
n
11
DG
28
B
CYT
29
n
12
DC
29
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
2
0.061
SIDE CHAIN
1
A
DT
4
0.065
SIDE CHAIN
1
A
DT
14
0.076
SIDE CHAIN
1
A
DA
15
0.058
SIDE CHAIN
1
B
DG
19
0.100
SIDE CHAIN
1
B
DT
20
0.064
SIDE CHAIN
1
B
DG
25
0.072
SIDE CHAIN
2
A
DC
13
0.062
SIDE CHAIN
2
A
DT
14
0.067
SIDE CHAIN
2
B
DG
19
0.105
SIDE CHAIN
2
B
DT
20
0.071
SIDE CHAIN
2
B
DC
24
0.063
SIDE CHAIN
2
B
DG
25
0.076
SIDE CHAIN
3
A
DT
4
0.060
SIDE CHAIN
3
A
DT
14
0.082
SIDE CHAIN
3
A
DA
15
0.064
SIDE CHAIN
3
B
DG
19
0.105
SIDE CHAIN
3
B
DT
20
0.063
SIDE CHAIN
3
B
DG
25
0.069
SIDE CHAIN
4
A
DC
2
0.064
SIDE CHAIN
4
A
DT
14
0.074
SIDE CHAIN
4
B
DG
19
0.106
SIDE CHAIN
4
B
DT
20
0.067
SIDE CHAIN
4
B
DC
24
0.063
SIDE CHAIN
4
B
DG
25
0.071
SIDE CHAIN
5
A
DT
14
0.063
SIDE CHAIN
5
B
DG
19
0.088
SIDE CHAIN
5
B
DT
20
0.070
SIDE CHAIN
5
B
DG
25
0.079
SIDE CHAIN
6
A
DT
14
0.064
SIDE CHAIN
6
B
DG
19
0.079
SIDE CHAIN
6
B
DT
20
0.073
SIDE CHAIN
6
B
DG
25
0.082
SIDE CHAIN
7
A
DA
7
0.057
SIDE CHAIN
7
B
DG
19
0.082
SIDE CHAIN
7
B
DT
20
0.073
SIDE CHAIN
7
B
DG
25
0.079
SIDE CHAIN
8
A
DT
4
0.060
SIDE CHAIN
8
A
DT
14
0.077
SIDE CHAIN
8
A
DA
15
0.056
SIDE CHAIN
8
B
DG
19
0.097
SIDE CHAIN
8
B
DT
20
0.065
SIDE CHAIN
8
B
DC
24
0.063
SIDE CHAIN
8
B
DG
25
0.069
SIDE CHAIN
9
A
DA
3
0.058
SIDE CHAIN
9
A
DA
7
0.053
SIDE CHAIN
9
A
DC
13
0.066
SIDE CHAIN
9
A
DT
14
0.071
SIDE CHAIN
9
A
DA
15
0.052
SIDE CHAIN
9
B
DG
19
0.094
SIDE CHAIN
9
B
DT
20
0.068
SIDE CHAIN
9
B
DG
25
0.078
SIDE CHAIN
10
A
DA
3
0.055
SIDE CHAIN
10
A
DT
4
0.061
SIDE CHAIN
10
A
DT
14
0.066
SIDE CHAIN
10
A
DA
15
0.051
SIDE CHAIN
10
B
DG
19
0.098
SIDE CHAIN
10
B
DT
20
0.065
SIDE CHAIN
10
B
DG
25
0.073
SIDE CHAIN
11
A
DT
14
0.066
SIDE CHAIN
11
B
DG
19
0.088
SIDE CHAIN
11
B
DT
20
0.068
SIDE CHAIN
11
B
DG
25
0.076
SIDE CHAIN
12
A
DA
3
0.057
SIDE CHAIN
12
A
DT
4
0.064
SIDE CHAIN
12
A
DA
7
0.058
SIDE CHAIN
12
A
DC
13
0.060
SIDE CHAIN
12
A
DT
14
0.065
SIDE CHAIN
12
B
DG
19
0.093
SIDE CHAIN
12
B
DT
20
0.074
SIDE CHAIN
12
B
DG
25
0.075
SIDE CHAIN
13
A
DA
3
0.053
SIDE CHAIN
13
A
DT
4
0.060
SIDE CHAIN
13
A
DC
13
0.060
SIDE CHAIN
13
A
DT
14
0.060
SIDE CHAIN
13
B
DG
19
0.089
SIDE CHAIN
13
B
DT
20
0.067
SIDE CHAIN
13
B
DG
25
0.076
SIDE CHAIN
14
A
DT
14
0.063
SIDE CHAIN
14
B
DG
19
0.086
SIDE CHAIN
14
B
DT
20
0.073
SIDE CHAIN
14
B
DG
25
0.082
SIDE CHAIN
15
A
DC
2
0.067
SIDE CHAIN
15
A
DT
14
0.080
SIDE CHAIN
15
B
DG
19
0.103
SIDE CHAIN
15
B
DT
20
0.073
SIDE CHAIN
15
B
DG
25
0.069
SIDE CHAIN
1
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
-3.61
0.60
122.90
119.29
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
1
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
3.51
0.30
108.30
111.81
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-6.23
1.00
110.10
103.87
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
1
4.97
0.30
108.30
113.27
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
3.60
0.30
108.30
111.90
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
1
-6.25
1.00
110.10
103.85
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
1
6.36
0.30
108.30
114.66
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
6.36
0.30
108.30
114.66
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
1.90
0.30
108.30
110.20
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
1
5.47
0.30
108.30
113.77
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
2.18
0.30
108.30
110.48
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
1
3.38
0.30
108.30
111.68
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
4.35
0.30
108.30
112.65
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
1
2.84
0.30
108.30
111.14
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
1
2.60
0.30
108.30
110.90
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
1
3.79
0.30
108.30
112.09
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
2
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
2
2.59
0.30
108.30
110.89
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
2
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
2
4.89
0.30
108.30
113.19
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
2
3.40
0.30
108.30
111.70
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
2
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
2
-6.22
1.00
110.10
103.88
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
2
5.11
0.30
108.30
113.41
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
2
4.00
0.30
108.30
112.30
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
2
2.71
0.30
108.30
111.01
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
2
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
2
5.87
0.30
108.30
114.17
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
2
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
2
3.22
0.30
108.30
111.52
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
2
4.21
0.30
108.30
112.51
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
2
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
2
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
2
3.47
0.30
108.30
111.77
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
3
2.17
0.30
108.30
110.47
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
3
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
3
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
3
3.30
0.30
108.30
111.60
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
3
-6.45
1.00
110.10
103.65
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
3
5.10
0.30
108.30
113.40
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
3
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
3
3.78
0.30
108.30
112.08
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
3
-6.08
1.00
110.10
104.02
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
3
6.06
0.30
108.30
114.36
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
3
6.33
0.30
108.30
114.63
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
3
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
3
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
3
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
3
5.60
0.30
108.30
113.90
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
3
2.08
0.30
108.30
110.38
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
3
3.40
0.30
108.30
111.70
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
3
4.42
0.30
108.30
112.72
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
3
2.64
0.30
108.30
110.94
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
3
2.73
0.30
108.30
111.03
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
3
3.49
0.30
108.30
111.79
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
4
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
4
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
4
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
4
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
4
-6.46
1.00
110.10
103.64
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
4
5.36
0.30
108.30
113.66
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
4
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
4
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
4
-6.46
1.00
110.10
103.64
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
4
4.90
0.30
108.30
113.20
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
4
3.96
0.30
108.30
112.26
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
4
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
4
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
4
5.81
0.30
108.30
114.11
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
4
2.10
0.30
108.30
110.40
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
4
3.21
0.30
108.30
111.51
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
4
4.17
0.30
108.30
112.47
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
4
2.54
0.30
108.30
110.84
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
4
2.78
0.30
108.30
111.08
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
4
3.77
0.30
108.30
112.07
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
5
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
5
2.01
0.30
108.30
110.31
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
5
2.66
0.30
108.30
110.96
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
5
3.19
0.30
108.30
111.49
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
5
4.46
0.30
108.30
112.76
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
5
3.98
0.30
108.30
112.28
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
5
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
5
-6.34
1.00
110.10
103.76
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
5
5.04
0.30
108.30
113.34
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
5
3.68
0.30
108.30
111.98
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
5
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
5
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
5
5.66
0.30
108.30
113.96
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
5
1.82
0.30
108.30
110.12
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
5
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
5
3.17
0.30
108.30
111.47
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
5
4.15
0.30
108.30
112.45
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
5
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
5
2.59
0.30
108.30
110.89
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
5
3.65
0.30
108.30
111.95
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
6
2.59
0.30
108.30
110.89
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
6
2.05
0.30
108.30
110.35
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
6
2.60
0.30
108.30
110.90
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
6
3.16
0.30
108.30
111.46
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
6
4.61
0.30
108.30
112.91
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
6
4.79
0.30
108.30
113.09
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
6
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
6
4.90
0.30
108.30
113.20
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
6
3.98
0.30
108.30
112.28
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
6
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
6
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
6
5.62
0.30
108.30
113.92
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
6
2.11
0.30
108.30
110.41
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
6
2.03
0.30
108.30
110.33
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
6
3.12
0.30
108.30
111.42
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
6
3.88
0.30
108.30
112.18
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
6
2.84
0.30
108.30
111.14
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
6
2.73
0.30
108.30
111.03
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
6
3.46
0.30
108.30
111.76
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
7
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
7
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
7
2.76
0.30
108.30
111.06
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
7
2.93
0.30
108.30
111.23
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
7
4.81
0.30
108.30
113.11
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
7
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
7
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
7
-6.37
1.00
110.10
103.73
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
7
5.15
0.30
108.30
113.45
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
7
4.08
0.30
108.30
112.38
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
7
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
7
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
7
5.58
0.30
108.30
113.88
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
7
2.10
0.30
108.30
110.40
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
7
2.21
0.30
108.30
110.51
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
7
3.66
0.30
108.30
111.96
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
7
4.10
0.30
108.30
112.40
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
7
2.47
0.30
108.30
110.77
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
7
2.65
0.30
108.30
110.95
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
7
3.44
0.30
108.30
111.74
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
8
2.27
0.30
108.30
110.57
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
8
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
8
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
8
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
8
-6.02
1.00
110.10
104.08
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
8
5.08
0.30
108.30
113.38
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
8
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
8
4.70
0.30
108.30
113.00
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
8
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
8
3.41
0.30
108.30
111.71
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
8
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
8
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
8
5.86
0.30
108.30
114.16
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
8
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
8
3.18
0.30
108.30
111.48
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
8
4.02
0.30
108.30
112.32
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
8
2.29
0.30
108.30
110.59
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
8
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
8
3.49
0.30
108.30
111.79
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
9
2.01
0.30
108.30
110.31
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
9
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
9
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
9
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
9
5.05
0.30
108.30
113.35
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
9
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
9
3.00
0.30
108.30
111.30
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
9
-6.27
1.00
110.10
103.83
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
9
5.26
0.30
108.30
113.56
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
9
4.76
0.30
108.30
113.06
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
9
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
9
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
9
5.72
0.30
108.30
114.02
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
9
1.80
0.30
108.30
110.10
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
9
2.15
0.30
108.30
110.45
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
9
3.43
0.30
108.30
111.73
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
9
4.14
0.30
108.30
112.44
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
9
2.54
0.30
108.30
110.84
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
9
3.65
0.30
108.30
111.95
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
10
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
10
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
10
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
10
-6.10
1.00
110.10
104.00
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
10
4.91
0.30
108.30
113.21
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
10
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
10
3.38
0.30
108.30
111.68
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
10
-6.39
1.00
110.10
103.71
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
10
5.10
0.30
108.30
113.40
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
10
4.28
0.30
108.30
112.58
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
10
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
10
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
10
5.74
0.30
108.30
114.04
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
10
2.28
0.30
108.30
110.58
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
10
3.53
0.30
108.30
111.83
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
10
4.11
0.30
108.30
112.41
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
10
2.62
0.30
108.30
110.92
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
10
2.63
0.30
108.30
110.93
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
10
3.59
0.30
108.30
111.89
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
11
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
11
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
11
2.71
0.30
108.30
111.01
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
11
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
11
-6.02
1.00
110.10
104.08
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
11
4.98
0.30
108.30
113.28
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
11
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
11
3.24
0.30
108.30
111.54
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
11
-6.43
1.00
110.10
103.67
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
11
5.10
0.30
108.30
113.40
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
11
4.30
0.30
108.30
112.60
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
11
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
11
2.55
0.30
108.30
110.85
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
11
5.77
0.30
108.30
114.07
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
11
1.95
0.30
108.30
110.25
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
11
2.27
0.30
108.30
110.57
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
11
3.40
0.30
108.30
111.70
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
11
4.15
0.30
108.30
112.45
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
11
2.49
0.30
108.30
110.79
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
11
2.68
0.30
108.30
110.98
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
11
3.62
0.30
108.30
111.92
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
12
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
12
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
12
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
12
-6.01
1.00
110.10
104.09
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
12
5.29
0.30
108.30
113.59
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
12
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
12
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
12
-6.34
1.00
110.10
103.76
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
12
4.98
0.30
108.30
113.28
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
12
4.12
0.30
108.30
112.42
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
12
2.74
0.30
108.30
111.04
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
12
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
12
5.71
0.30
108.30
114.01
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
12
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
12
3.22
0.30
108.30
111.52
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
12
4.18
0.30
108.30
112.48
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
12
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
12
3.53
0.30
108.30
111.83
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
13
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
13
1.99
0.30
108.30
110.29
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
13
2.71
0.30
108.30
111.01
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
13
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
13
4.92
0.30
108.30
113.22
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
13
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
13
4.45
0.30
108.30
112.75
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
13
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
13
3.25
0.30
108.30
111.55
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
13
2.75
0.30
108.30
111.05
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
13
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
13
5.60
0.30
108.30
113.90
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
13
1.98
0.30
108.30
110.28
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
13
2.18
0.30
108.30
110.48
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
13
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
13
3.85
0.30
108.30
112.15
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
13
2.04
0.30
108.30
110.34
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
13
2.66
0.30
108.30
110.96
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
13
3.27
0.30
108.30
111.57
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
14
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
14
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
14
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
14
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
14
-6.06
1.00
110.10
104.04
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
14
5.05
0.30
108.30
113.35
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
14
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
14
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
14
-6.49
1.00
110.10
103.61
A
A
A
C1'
O4'
C4'
DA
DA
DA
10
10
10
N
14
5.10
0.30
108.30
113.40
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
14
4.12
0.30
108.30
112.42
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
14
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
14
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
14
5.61
0.30
108.30
113.91
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
14
2.04
0.30
108.30
110.34
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
14
2.14
0.30
108.30
110.44
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
14
3.46
0.30
108.30
111.76
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
14
4.04
0.30
108.30
112.34
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
14
2.52
0.30
108.30
110.82
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
14
2.61
0.30
108.30
110.91
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
14
3.45
0.30
108.30
111.75
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
15
2.26
0.30
108.30
110.56
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
15
2.27
0.30
108.30
110.57
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
15
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
15
3.51
0.30
108.30
111.81
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
15
-6.20
1.00
110.10
103.90
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
15
5.09
0.30
108.30
113.39
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
15
4.13
0.30
108.30
112.43
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
15
3.54
0.30
108.30
111.84
A
A
A
O4'
C1'
N1
DU
DU
DU
9
9
9
N
15
6.09
0.30
108.30
114.39
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
15
6.34
0.30
108.30
114.64
A
A
A
O4'
C1'
N9
DA
DA
DA
11
11
11
N
15
2.01
0.30
108.30
110.31
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
15
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N1
DC
DC
DC
16
16
16
N
15
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
15
5.83
0.30
108.30
114.13
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
15
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
15
3.20
0.30
108.30
111.50
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
15
3.96
0.30
108.30
112.26
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
15
3.32
0.30
108.30
111.62
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
15
3.19
0.30
108.30
111.49
B
B
B
O4'
C1'
N1
DT
DT
DT
27
27
27
N
15
3.67
0.30
108.30
111.97
B
B
B
O4'
C1'
N9
DG
DG
DG
28
28
28
N
15
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N1
DC
DC
DC
29
29
29
N
Solution Structure of dAAUAA DNA Bulge
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
29
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
29
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
29
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
28
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
28
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
28
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
27
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
27
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
26
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
26
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
25
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
25
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
25
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
24
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
24
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
24
B
N4
DC
7
1_555
hydrog
DA-DC MISPAIR
A
DA
11
A
N6
DA
11
1_555
B
DC
23
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
23
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
23
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
23
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
13
A
N3
DC
13
1_555
B
DG
22
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
13
A
N4
DC
13
1_555
B
DG
22
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
13
A
O2
DC
13
1_555
B
DG
22
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
14
A
N3
DT
14
1_555
B
DA
21
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
14
A
O4
DT
14
1_555
B
DA
21
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
15
A
N1
DA
15
1_555
B
DT
20
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
15
A
N6
DA
15
1_555
B
DT
20
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
16
A
N3
DC
16
1_555
B
DG
19
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
16
A
N4
DC
16
1_555
B
DG
19
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
16
A
O2
DC
16
1_555
B
DG
19
B
N2
DG
2
1_555
DNA
DNA bulge, five-nucleotide bulge loop, deoxyribonucleic acid, DNA
1JS7
PDB
1
1JS7
1JS7
PDB
2
1JS7
1
17
1JS7
1
17
1JS7
A
1
1
17
18
29
1JS7
18
29
1JS7
B
2
1
12