0.026212 0.000000 0.009613 0.000000 0.030012 0.000000 0.000000 0.000000 0.023035 0.00000 0.00000 0.00000 Harata, K. Abe, Y. Muraki, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 110.14 90.00 38.150 33.320 46.240 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H8 O 60.095 N-PROPANOL 1-PROPONOL non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 30 232 243 10.1002/(SICI)1097-0134(19980215)30:3<232::AID-PROT3>3.3.CO;2-B 9517539 Full-matrix least-squares refinement of lysozymes and analysis of anisotropic thermal motion. 1998 10.2210/pdb1jse/pdb pdb_00001jse 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 285 1 AREA DETECTOR 1996-01 ENRAF-NONIUS GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 14228.105 LYSOZYME 3.2.1.17 1 nat polymer 60.095 N-PROPANOL 1 syn non-polymer 18.015 water 143 nat water no no KVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRWWCNDGRTPGSKNLCNIPC SALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDVHAWIRGCRL KVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRWWCNDGRTPGSKNLCNIPC SALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDVHAWIRGCRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n turkey Meleagris sample EGG CYTOPLASM (WHITE) 9103 Meleagris gallopavo 1 1.91 35.6 4.2 2.2M AMMONIUM SULFATE SOLUTION AT PH 4.2 CONTAINING 10% 1-PROPANOL AND 4% PROTEIN pdbx_database_status pdbx_distant_solvent_atoms struct_conn struct_conn_type struct_site database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Advisory Derived calculations Other Database references Refinement description 1 0 1998-04-29 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-03-10 1 4 2023-08-09 _pdbx_database_status.process_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1998-01-05 REL REL 1 A O HOH 273 5.83 1 A O HOH 289 6.66 1 A O HOH 315 6.44 1 A O HOH 319 6.72 1 A O HOH 324 7.21 1 A O HOH 328 6.33 1 A O HOH 404 A 7.17 1 A O HOH 407 A 7.63 1 A O HOH 408 A 9.61 POL N-PROPANOL HOH water 1LZ3 PDB ENTRY 1LZ3 PDB experimental model POL 130 2 POL POL 130 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 400 3 HOH HOH 400 A HOH 401 3 HOH HOH 401 A HOH 402 3 HOH HOH 402 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 406 3 HOH HOH 406 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A TYR 3 n 3 TYR 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A PHE 34 n 34 PHE 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A HIS 41 n 41 HIS 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TRP 62 n 62 TRP 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASN 65 n 65 ASN 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A LYS 73 n 73 LYS 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ASN 77 n 77 ASN 77 A ILE 78 n 78 ILE 78 A PRO 79 n 79 PRO 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A SER 85 n 85 SER 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ALA 90 n 90 ALA 90 A SER 91 n 91 SER 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A ALA 99 n 99 ALA 99 A SER 100 n 100 SER 100 A GLY 101 n 101 GLY 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A MET 105 n 105 MET 105 A ASN 106 n 106 ASN 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A ARG 114 n 114 ARG 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A VAL 120 n 120 VAL 120 A HIS 121 n 121 HIS 121 A ALA 122 n 122 ALA 122 A TRP 123 n 123 TRP 123 A ILE 124 n 124 ILE 124 A ARG 125 n 125 ARG 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A 0.092 0.104 0.091 0.103 0.14 10. 24505 author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASN 44 A O ASN 44 A N ASP 52 A N ASP 52 A N TYR 53 A N TYR 53 A O ILE 58 A O ILE 58 1 A A O O HOH HOH 223 237 1.99 1 A A NH2 C ARG GLY 45 49 2.09 1 A A OD1 OD1 ASN ASN 46 59 2.13 B 1 A ARG 14 0.107 SIDE CHAIN 1 A ARG 21 0.299 SIDE CHAIN 1 A ARG 45 0.269 SIDE CHAIN 1 A ARG 61 0.101 SIDE CHAIN 1 A ARG 68 0.103 SIDE CHAIN 1 A ARG 112 0.160 SIDE CHAIN 1 A ARG 125 0.244 SIDE CHAIN 1 A ARG 128 0.144 SIDE CHAIN 1 -3.72 0.50 120.30 116.58 A A A NE CZ NH1 ARG ARG ARG 68 68 68 N 1 3.22 0.50 120.30 123.52 A A A NE CZ NH2 ARG ARG ARG 68 68 68 N 1 A SER 36 -140.32 -1.14 1 A THR 47 -68.42 6.88 0.14 0.104 0.103 1.12 22.3 10631 36302 12784 10. 86.1 1 FREE R 0. MOLECULAR REPLACEMENT PDB ENTRY 1LZ3 SWAT 5 1.12 22.3 157 1181 8 0 1016 0.013 0.216 0.080 1.12 22.3 1JSE 36320 0.0 0.043 1 5.3 3.1 86.1 0.227 1.12 1.14 53.3 data collection MADNES data reduction MERGEF model building SHELXL-93 model building X-PLOR refinement SHELXL-93 refinement X-PLOR data reduction MADNES data scaling MERGEF phasing SHELXL-93 phasing X-PLOR FULL-MATRIX LEAST-SQUARES REFINEMENT OF TURKEY LYSOZYME 1 N N 2 N N 3 N N A ARG 5 A ARG 5 HELX_P A LEU 15 A LEU 15 1 1 11 A TYR 20 A TYR 20 HELX_P A GLY 22 A GLY 22 5 2 3 A LEU 25 A LEU 25 HELX_P A SER 36 A SER 36 1 3 12 A CYS 80 A CYS 80 HELX_P A LEU 84 A LEU 84 5 4 5 A THR 89 A THR 89 HELX_P A SER 100 A SER 100 1 5 12 A GLY 104 A GLY 104 HELX_P A ALA 107 A ALA 107 5 6 4 A VAL 109 A VAL 109 HELX_P A ARG 114 A ARG 114 1 7 6 A HIS 121 A HIS 121 HELX_P A ILE 124 A ILE 124 5 8 4 disulf 2.017 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.042 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.027 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.022 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 HYDROLASE HYDROLASE, O-GLYCOSYL, TURKEY LYSOZYME, ENZYME LYSC_MELGA UNP 1 1 P00703 MRSLLILVLCFLPLAALGKVYGRCELAAAMKRLGLDNYRGYSLGNWVCAAKFESNFNTHATNRNTDGSTDYGILQINSRW WCNDGRTPGSKNLCNIPCSALLSSDITASVNCAKKIASGGNGMNAWVAWRNRCKGTDVHAWIRGCRL 19 147 1JSE 1 129 P00703 A 1 1 129 3 anti-parallel anti-parallel A THR 43 A THR 43 A ARG 45 A ARG 45 A THR 51 A THR 51 A TYR 53 A TYR 53 A ILE 58 A ILE 58 A ASN 59 A ASN 59 BINDING SITE FOR RESIDUE POL A 130 A POL 130 Software 10 A GLY 22 A GLY 22 10 1_555 A SER 24 A SER 24 10 1_555 A ASN 27 A ASN 27 10 1_555 A THR 43 A THR 43 10 1_545 A THR 118 A THR 118 10 1_555 A VAL 120 A VAL 120 10 1_555 A HIS 121 A HIS 121 10 1_555 A HOH 220 C HOH 10 1_545 A HOH 400 C HOH 10 1_555 A HOH 406 C HOH 10 1_545 4 P 1 21 1