.013318 .000000 .006472 .000000 .015119 .000000 .000000 .000000 .020042 .00000 .00000 .00000 Johansson, E. Mejlhede, N. Neuhard, J. Larsen, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 115.92 90.00 75.086 66.142 55.476 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H14 N2 O5 230.218 TETRAHYDRODEOXYURIDINE non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 N C N 323 N O N 324 N N N 325 N C N 326 N O N 327 N C N 328 N C N 329 R C N 330 N C N 331 S C N 332 N O N 333 R C N 334 N O N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C N 362 N O N 363 N O N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C N 380 N C N 381 N C N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing Y 348 N doub Y 349 N sing Y 350 N sing N 351 N sing Y 352 N doub N 353 N sing Y 354 N doub N 355 N sing Y 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing US Biochemistry BICHAW 0033 0006-2960 41 2563 2570 10.1021/bi011849a 11851403 Crystal structure of the tetrameric cytidine deaminase from Bacillus subtilis at 2.0 A resolution. 2002 US J.BACTERIOL. JOBAAY 0767 0021-9193 181 2930 2937 Ribosomal -1 frameshifting during decoding of Bacillus subtilis cdd occurs at the sequence CGA AAG 1999 10.2210/pdb1jtk/pdb pdb_00001jtk 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 120 1 mirrors IMAGE PLATE 2001-02-01 MARRESEARCH osmic mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 14869.015 cytidine deaminase 3.5.4.5 2 man polymer 65.409 ZINC ION 2 syn non-polymer 230.218 TETRAHYDRODEOXYURIDINE 2 syn non-polymer 18.015 water 183 nat water no no MNRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKAVSEGDTEFQMLAVAADTP GPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDLHDERKL MNRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKAVSEGDTEFQMLAVAADTP GPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDLHDERKL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus Escherichia sample cdd 1423 Bacillus subtilis 562 Escherichia coli JF611 plasmid pSO143 1 2.08 40.93 VAPOR DIFFUSION, HANGING DROP 4.6 26% 2-methyl-2,4-pentanediol, 10mM calcium chloride, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2002-04-10 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-10-25 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2001-08-21 REL REL ZN ZINC ION THU TETRAHYDRODEOXYURIDINE HOH water 1CTT PDB ENTRY 1CTT PDB experimental model ZN 137 2 ZN ZN 137 A THU 138 3 THU THU 138 A ZN 137 2 ZN ZN 137 B THU 138 3 THU THU 1138 B HOH 139 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A HOH 141 4 HOH HOH 141 A HOH 142 4 HOH HOH 142 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 145 4 HOH HOH 145 A HOH 146 4 HOH HOH 146 A HOH 147 4 HOH HOH 147 A HOH 148 4 HOH HOH 148 A HOH 149 4 HOH HOH 149 A HOH 150 4 HOH HOH 150 A HOH 151 4 HOH HOH 151 A HOH 152 4 HOH HOH 152 A HOH 153 4 HOH HOH 153 A HOH 154 4 HOH HOH 154 A HOH 155 4 HOH HOH 155 A HOH 156 4 HOH HOH 156 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 159 4 HOH HOH 159 A HOH 160 4 HOH HOH 160 A HOH 161 4 HOH HOH 161 A HOH 162 4 HOH HOH 162 A HOH 163 4 HOH HOH 163 A HOH 164 4 HOH HOH 164 A HOH 165 4 HOH HOH 165 A HOH 166 4 HOH HOH 166 A HOH 167 4 HOH HOH 167 A HOH 168 4 HOH HOH 168 A HOH 169 4 HOH HOH 169 A HOH 170 4 HOH HOH 170 A HOH 171 4 HOH HOH 171 A HOH 172 4 HOH HOH 172 A HOH 173 4 HOH HOH 173 A HOH 174 4 HOH HOH 174 A HOH 175 4 HOH HOH 175 A HOH 176 4 HOH HOH 176 A HOH 177 4 HOH HOH 177 A HOH 178 4 HOH HOH 178 A HOH 179 4 HOH HOH 179 A HOH 180 4 HOH HOH 180 A HOH 181 4 HOH HOH 181 A HOH 182 4 HOH HOH 182 A HOH 183 4 HOH HOH 183 A HOH 184 4 HOH HOH 184 A HOH 185 4 HOH HOH 185 A HOH 186 4 HOH HOH 186 A HOH 187 4 HOH HOH 187 A HOH 188 4 HOH HOH 188 A HOH 189 4 HOH HOH 189 A HOH 190 4 HOH HOH 190 A HOH 3 4 HOH HOH 2003 A HOH 54 4 HOH HOH 2054 A HOH 63 4 HOH HOH 2063 A HOH 75 4 HOH HOH 2075 A HOH 87 4 HOH HOH 2087 A HOH 89 4 HOH HOH 2089 A HOH 94 4 HOH HOH 2094 A HOH 97 4 HOH HOH 2097 A HOH 109 4 HOH HOH 2109 A HOH 110 4 HOH HOH 2110 A HOH 115 4 HOH HOH 2115 A HOH 116 4 HOH HOH 2116 A HOH 122 4 HOH HOH 2122 A HOH 123 4 HOH HOH 2123 A HOH 125 4 HOH HOH 2125 A HOH 129 4 HOH HOH 2129 A HOH 131 4 HOH HOH 2131 A HOH 140 4 HOH HOH 2140 A HOH 141 4 HOH HOH 2141 A HOH 147 4 HOH HOH 2147 A HOH 149 4 HOH HOH 2149 A HOH 150 4 HOH HOH 2150 A HOH 153 4 HOH HOH 2153 A HOH 154 4 HOH HOH 2154 A HOH 157 4 HOH HOH 2157 A HOH 159 4 HOH HOH 2159 A HOH 163 4 HOH HOH 2163 A HOH 164 4 HOH HOH 2164 A HOH 166 4 HOH HOH 2166 A HOH 167 4 HOH HOH 2167 A HOH 170 4 HOH HOH 2170 A HOH 171 4 HOH HOH 2171 A HOH 174 4 HOH HOH 2174 A HOH 177 4 HOH HOH 2177 A HOH 179 4 HOH HOH 2179 A HOH 180 4 HOH HOH 2180 A HOH 181 4 HOH HOH 2181 A HOH 182 4 HOH HOH 2182 A HOH 139 4 HOH HOH 1139 B HOH 140 4 HOH HOH 1140 B HOH 141 4 HOH HOH 1141 B HOH 142 4 HOH HOH 1142 B HOH 143 4 HOH HOH 1143 B HOH 144 4 HOH HOH 1144 B HOH 145 4 HOH HOH 1145 B HOH 146 4 HOH HOH 1146 B HOH 147 4 HOH HOH 1147 B HOH 148 4 HOH HOH 1148 B HOH 149 4 HOH HOH 1149 B HOH 150 4 HOH HOH 1150 B HOH 151 4 HOH HOH 1151 B HOH 152 4 HOH HOH 1152 B HOH 153 4 HOH HOH 1153 B HOH 154 4 HOH HOH 1154 B HOH 155 4 HOH HOH 1155 B HOH 156 4 HOH HOH 1156 B HOH 157 4 HOH HOH 1157 B HOH 158 4 HOH HOH 1158 B HOH 159 4 HOH HOH 1159 B HOH 160 4 HOH HOH 1160 B HOH 161 4 HOH HOH 1161 B HOH 162 4 HOH HOH 1162 B HOH 163 4 HOH HOH 1163 B HOH 164 4 HOH HOH 1164 B HOH 165 4 HOH HOH 1165 B HOH 166 4 HOH HOH 1166 B HOH 167 4 HOH HOH 1167 B HOH 168 4 HOH HOH 1168 B HOH 169 4 HOH HOH 1169 B HOH 170 4 HOH HOH 1170 B HOH 171 4 HOH HOH 1171 B HOH 172 4 HOH HOH 1172 B HOH 173 4 HOH HOH 1173 B HOH 174 4 HOH HOH 1174 B HOH 175 4 HOH HOH 1175 B HOH 176 4 HOH HOH 1176 B HOH 177 4 HOH HOH 1177 B HOH 178 4 HOH HOH 1178 B HOH 179 4 HOH HOH 1179 B HOH 180 4 HOH HOH 1180 B HOH 181 4 HOH HOH 1181 B HOH 182 4 HOH HOH 1182 B HOH 183 4 HOH HOH 1183 B HOH 184 4 HOH HOH 1184 B HOH 185 4 HOH HOH 1185 B HOH 186 4 HOH HOH 1186 B HOH 187 4 HOH HOH 1187 B HOH 188 4 HOH HOH 1188 B HOH 189 4 HOH HOH 1189 B HOH 190 4 HOH HOH 1190 B HOH 15 4 HOH HOH 2015 B HOH 24 4 HOH HOH 2024 B HOH 50 4 HOH HOH 2050 B HOH 58 4 HOH HOH 2058 B HOH 68 4 HOH HOH 2068 B HOH 69 4 HOH HOH 2069 B HOH 70 4 HOH HOH 2070 B HOH 79 4 HOH HOH 2079 B HOH 80 4 HOH HOH 2080 B HOH 82 4 HOH HOH 2082 B HOH 88 4 HOH HOH 2088 B HOH 91 4 HOH HOH 2091 B HOH 92 4 HOH HOH 2092 B HOH 93 4 HOH HOH 2093 B HOH 95 4 HOH HOH 2095 B HOH 96 4 HOH HOH 2096 B HOH 101 4 HOH HOH 2101 B HOH 105 4 HOH HOH 2105 B HOH 106 4 HOH HOH 2106 B HOH 107 4 HOH HOH 2107 B HOH 113 4 HOH HOH 2113 B HOH 119 4 HOH HOH 2119 B HOH 124 4 HOH HOH 2124 B HOH 128 4 HOH HOH 2128 B HOH 134 4 HOH HOH 2134 B HOH 135 4 HOH HOH 2135 B HOH 138 4 HOH HOH 2138 B HOH 142 4 HOH HOH 2142 B HOH 152 4 HOH HOH 2152 B HOH 155 4 HOH HOH 2155 B HOH 156 4 HOH HOH 2156 B HOH 158 4 HOH HOH 2158 B HOH 160 4 HOH HOH 2160 B HOH 161 4 HOH HOH 2161 B HOH 162 4 HOH HOH 2162 B HOH 165 4 HOH HOH 2165 B HOH 172 4 HOH HOH 2172 B HOH 175 4 HOH HOH 2175 B HOH 176 4 HOH HOH 2176 B HOH 178 4 HOH HOH 2178 B HOH 183 4 HOH HOH 2183 B MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ARG 3 n 3 ARG 3 A GLN 4 n 4 GLN 4 A GLU 5 n 5 GLU 5 A LEU 6 n 6 LEU 6 A ILE 7 n 7 ILE 7 A THR 8 n 8 THR 8 A GLU 9 n 9 GLU 9 A ALA 10 n 10 ALA 10 A LEU 11 n 11 LEU 11 A LYS 12 n 12 LYS 12 A ALA 13 n 13 ALA 13 A ARG 14 n 14 ARG 14 A ASP 15 n 15 ASP 15 A MET 16 n 16 MET 16 A ALA 17 n 17 ALA 17 A TYR 18 n 18 TYR 18 A ALA 19 n 19 ALA 19 A PRO 20 n 20 PRO 20 A TYR 21 n 21 TYR 21 A SER 22 n 22 SER 22 A LYS 23 n 23 LYS 23 A PHE 24 n 24 PHE 24 A GLN 25 n 25 GLN 25 A VAL 26 n 26 VAL 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ALA 29 n 29 ALA 29 A LEU 30 n 30 LEU 30 A LEU 31 n 31 LEU 31 A THR 32 n 32 THR 32 A LYS 33 n 33 LYS 33 A ASP 34 n 34 ASP 34 A GLY 35 n 35 GLY 35 A LYS 36 n 36 LYS 36 A VAL 37 n 37 VAL 37 A TYR 38 n 38 TYR 38 A ARG 39 n 39 ARG 39 A GLY 40 n 40 GLY 40 A CYS 41 n 41 CYS 41 A ASN 42 n 42 ASN 42 A ILE 43 n 43 ILE 43 A GLU 44 n 44 GLU 44 A ASN 45 n 45 ASN 45 A ALA 46 n 46 ALA 46 A ALA 47 n 47 ALA 47 A TYR 48 n 48 TYR 48 A SER 49 n 49 SER 49 A MET 50 n 50 MET 50 A CYS 51 n 51 CYS 51 A ASN 52 n 52 ASN 52 A CYS 53 n 53 CYS 53 A ALA 54 n 54 ALA 54 A GLU 55 n 55 GLU 55 A ARG 56 n 56 ARG 56 A THR 57 n 57 THR 57 A ALA 58 n 58 ALA 58 A LEU 59 n 59 LEU 59 A PHE 60 n 60 PHE 60 A LYS 61 n 61 LYS 61 A ALA 62 n 62 ALA 62 A VAL 63 n 63 VAL 63 A SER 64 n 64 SER 64 A GLU 65 n 65 GLU 65 A GLY 66 n 66 GLY 66 A ASP 67 n 67 ASP 67 A THR 68 n 68 THR 68 A GLU 69 n 69 GLU 69 A PHE 70 n 70 PHE 70 A GLN 71 n 71 GLN 71 A MET 72 n 72 MET 72 A LEU 73 n 73 LEU 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ALA 76 n 76 ALA 76 A ALA 77 n 77 ALA 77 A ASP 78 n 78 ASP 78 A THR 79 n 79 THR 79 A PRO 80 n 80 PRO 80 A GLY 81 n 81 GLY 81 A PRO 82 n 82 PRO 82 A VAL 83 n 83 VAL 83 A SER 84 n 84 SER 84 A PRO 85 n 85 PRO 85 A CYS 86 n 86 CYS 86 A GLY 87 n 87 GLY 87 A ALA 88 n 88 ALA 88 A CYS 89 n 89 CYS 89 A ARG 90 n 90 ARG 90 A GLN 91 n 91 GLN 91 A VAL 92 n 92 VAL 92 A ILE 93 n 93 ILE 93 A SER 94 n 94 SER 94 A GLU 95 n 95 GLU 95 A LEU 96 n 96 LEU 96 A CYS 97 n 97 CYS 97 A THR 98 n 98 THR 98 A LYS 99 n 99 LYS 99 A ASP 100 n 100 ASP 100 A VAL 101 n 101 VAL 101 A ILE 102 n 102 ILE 102 A VAL 103 n 103 VAL 103 A VAL 104 n 104 VAL 104 A LEU 105 n 105 LEU 105 A THR 106 n 106 THR 106 A ASN 107 n 107 ASN 107 A LEU 108 n 108 LEU 108 A GLN 109 n 109 GLN 109 A GLY 110 n 110 GLY 110 A GLN 111 n 111 GLN 111 A ILE 112 n 112 ILE 112 A LYS 113 n 113 LYS 113 A GLU 114 n 114 GLU 114 A MET 115 n 115 MET 115 A THR 116 n 116 THR 116 A VAL 117 n 117 VAL 117 A GLU 118 n 118 GLU 118 A GLU 119 n 119 GLU 119 A LEU 120 n 120 LEU 120 A LEU 121 n 121 LEU 121 A PRO 122 n 122 PRO 122 A GLY 123 n 123 GLY 123 A ALA 124 n 124 ALA 124 A PHE 125 n 125 PHE 125 A SER 126 n 126 SER 126 A SER 127 n 127 SER 127 A GLU 128 n 128 GLU 128 A ASP 129 n 129 ASP 129 A LEU 130 n 130 LEU 130 A HIS 131 n 131 HIS 131 A n 132 132 A n 133 133 A n 134 134 A n 135 135 A n 136 136 A MET 1 n 1 MET 1 B ASN 2 n 2 ASN 2 B ARG 3 n 3 ARG 3 B GLN 4 n 4 GLN 4 B GLU 5 n 5 GLU 5 B LEU 6 n 6 LEU 6 B ILE 7 n 7 ILE 7 B THR 8 n 8 THR 8 B GLU 9 n 9 GLU 9 B ALA 10 n 10 ALA 10 B LEU 11 n 11 LEU 11 B LYS 12 n 12 LYS 12 B ALA 13 n 13 ALA 13 B ARG 14 n 14 ARG 14 B ASP 15 n 15 ASP 15 B MET 16 n 16 MET 16 B ALA 17 n 17 ALA 17 B TYR 18 n 18 TYR 18 B ALA 19 n 19 ALA 19 B PRO 20 n 20 PRO 20 B TYR 21 n 21 TYR 21 B SER 22 n 22 SER 22 B LYS 23 n 23 LYS 23 B PHE 24 n 24 PHE 24 B GLN 25 n 25 GLN 25 B VAL 26 n 26 VAL 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ALA 29 n 29 ALA 29 B LEU 30 n 30 LEU 30 B LEU 31 n 31 LEU 31 B THR 32 n 32 THR 32 B LYS 33 n 33 LYS 33 B ASP 34 n 34 ASP 34 B GLY 35 n 35 GLY 35 B LYS 36 n 36 LYS 36 B VAL 37 n 37 VAL 37 B TYR 38 n 38 TYR 38 B ARG 39 n 39 ARG 39 B GLY 40 n 40 GLY 40 B CYS 41 n 41 CYS 41 B ASN 42 n 42 ASN 42 B ILE 43 n 43 ILE 43 B GLU 44 n 44 GLU 44 B ASN 45 n 45 ASN 45 B ALA 46 n 46 ALA 46 B ALA 47 n 47 ALA 47 B TYR 48 n 48 TYR 48 B SER 49 n 49 SER 49 B MET 50 n 50 MET 50 B CYS 51 n 51 CYS 51 B ASN 52 n 52 ASN 52 B CYS 53 n 53 CYS 53 B ALA 54 n 54 ALA 54 B GLU 55 n 55 GLU 55 B ARG 56 n 56 ARG 56 B THR 57 n 57 THR 57 B ALA 58 n 58 ALA 58 B LEU 59 n 59 LEU 59 B PHE 60 n 60 PHE 60 B LYS 61 n 61 LYS 61 B ALA 62 n 62 ALA 62 B VAL 63 n 63 VAL 63 B SER 64 n 64 SER 64 B GLU 65 n 65 GLU 65 B GLY 66 n 66 GLY 66 B ASP 67 n 67 ASP 67 B THR 68 n 68 THR 68 B GLU 69 n 69 GLU 69 B PHE 70 n 70 PHE 70 B GLN 71 n 71 GLN 71 B MET 72 n 72 MET 72 B LEU 73 n 73 LEU 73 B ALA 74 n 74 ALA 74 B VAL 75 n 75 VAL 75 B ALA 76 n 76 ALA 76 B ALA 77 n 77 ALA 77 B ASP 78 n 78 ASP 78 B THR 79 n 79 THR 79 B PRO 80 n 80 PRO 80 B GLY 81 n 81 GLY 81 B PRO 82 n 82 PRO 82 B VAL 83 n 83 VAL 83 B SER 84 n 84 SER 84 B PRO 85 n 85 PRO 85 B CYS 86 n 86 CYS 86 B GLY 87 n 87 GLY 87 B ALA 88 n 88 ALA 88 B CYS 89 n 89 CYS 89 B ARG 90 n 90 ARG 90 B GLN 91 n 91 GLN 91 B VAL 92 n 92 VAL 92 B ILE 93 n 93 ILE 93 B SER 94 n 94 SER 94 B GLU 95 n 95 GLU 95 B LEU 96 n 96 LEU 96 B CYS 97 n 97 CYS 97 B THR 98 n 98 THR 98 B LYS 99 n 99 LYS 99 B ASP 100 n 100 ASP 100 B VAL 101 n 101 VAL 101 B ILE 102 n 102 ILE 102 B VAL 103 n 103 VAL 103 B VAL 104 n 104 VAL 104 B LEU 105 n 105 LEU 105 B THR 106 n 106 THR 106 B ASN 107 n 107 ASN 107 B LEU 108 n 108 LEU 108 B GLN 109 n 109 GLN 109 B GLY 110 n 110 GLY 110 B GLN 111 n 111 GLN 111 B ILE 112 n 112 ILE 112 B LYS 113 n 113 LYS 113 B GLU 114 n 114 GLU 114 B MET 115 n 115 MET 115 B THR 116 n 116 THR 116 B VAL 117 n 117 VAL 117 B GLU 118 n 118 GLU 118 B GLU 119 n 119 GLU 119 B LEU 120 n 120 LEU 120 B LEU 121 n 121 LEU 121 B PRO 122 n 122 PRO 122 B GLY 123 n 123 GLY 123 B ALA 124 n 124 ALA 124 B PHE 125 n 125 PHE 125 B SER 126 n 126 SER 126 B SER 127 n 127 SER 127 B GLU 128 n 128 GLU 128 B ASP 129 n 129 ASP 129 B LEU 130 n 130 LEU 130 B HIS 131 n 131 HIS 131 B n 132 132 B n 133 133 B n 134 134 B n 135 135 B n 136 136 B author_and_software_defined_assembly PISA,PQS 4 tetrameric 11730 -225 18140 A CYS 53 A SG CYS 53 1_555 A ZN 137 C ZN ZN 1_555 A CYS 86 A SG CYS 86 1_555 110.7 A CYS 53 A SG CYS 53 1_555 A ZN 137 C ZN ZN 1_555 A CYS 89 A SG CYS 89 1_555 103.7 A CYS 86 A SG CYS 86 1_555 A ZN 137 C ZN ZN 1_555 A CYS 89 A SG CYS 89 1_555 116.7 A CYS 53 A SG CYS 53 1_555 A ZN 137 C ZN ZN 1_555 A THU 138 D O4 THU 1_555 118.4 A CYS 86 A SG CYS 86 1_555 A ZN 137 C ZN ZN 1_555 A THU 138 D O4 THU 1_555 104.6 A CYS 89 A SG CYS 89 1_555 A ZN 137 C ZN ZN 1_555 A THU 138 D O4 THU 1_555 103.0 B CYS 53 B SG CYS 53 1_555 B ZN 137 E ZN ZN 1_555 B CYS 86 B SG CYS 86 1_555 111.9 B CYS 53 B SG CYS 53 1_555 B ZN 137 E ZN ZN 1_555 B CYS 89 B SG CYS 89 1_555 104.0 B CYS 86 B SG CYS 86 1_555 B ZN 137 E ZN ZN 1_555 B CYS 89 B SG CYS 89 1_555 116.1 B CYS 53 B SG CYS 53 1_555 B ZN 137 E ZN ZN 1_555 B THU 1138 F O4 THU 1_555 117.2 B CYS 86 B SG CYS 86 1_555 B ZN 137 E ZN ZN 1_555 B THU 1138 F O4 THU 1_555 105.2 B CYS 89 B SG CYS 89 1_555 B ZN 137 E ZN ZN 1_555 B THU 1138 F O4 THU 1_555 102.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_657 -x+1,y,-z+2 crystal symmetry operation 26.5871314585 0.0000000000 99.7908114718 A O TYR 38 A O TYR 38 A N LEU 30 A N LEU 30 A N LEU 31 A N LEU 31 A O MET 72 A O MET 72 A N LEU 73 A N LEU 73 A O VAL 104 A O VAL 104 A N VAL 103 A N VAL 103 A O MET 115 A O MET 115 B O TYR 38 B O TYR 38 B N LEU 30 B N LEU 30 B N LEU 31 B N LEU 31 B O MET 72 B O MET 72 B N LEU 73 B N LEU 73 B O VAL 104 B O VAL 104 B N VAL 103 B N VAL 103 B O MET 115 B O MET 115 1 A ASP 132 A ASP 132 1 Y 1 A GLU 133 A GLU 133 1 Y 1 A ARG 134 A ARG 134 1 Y 1 A LYS 135 A LYS 135 1 Y 1 A LEU 136 A LEU 136 1 Y 1 B ASP 132 B ASP 132 1 Y 1 B GLU 133 B GLU 133 1 Y 1 B ARG 134 B ARG 134 1 Y 1 B LYS 135 B LYS 135 1 Y 1 B LEU 136 B LEU 136 1 Y 1 A C1' THU 138 PLANAR 1 B C1' THU 1138 PLANAR 1 A TYR 48 -37.54 -39.47 1 A ASN 107 -118.75 -150.76 1 A LEU 121 -152.07 75.58 1 B TYR 48 -36.86 -39.74 1 B ASN 107 -117.43 -150.07 1 B LEU 121 -152.06 75.76 PROTEIN_REP.PARAM PROTEIN.TOP ION.PARAM ION.TOP THU_PAR.TXT THU_TOP.TXT WATER.PARAM WATER.TOP 14.5 -1.92 0.00 1.53 -0.31 0.00 2.24 BULK SOLVENT MODEL USED 0.2320000 .008 0.2070000 2.04 19.92 777 15599 15599 5.0 99.1 RANDOM 1515341.58 .000000 1 RESTRAINED THROUGHOUT .0 MOLECULAR REPLACEMENT PDB ENTRY 1CTT FLAT MODEL 46.12 0.360233 0.26 0.22 5.00 0.14 0.10 2.04 19.92 183 2193 34 0 1976 .005 1.2 23.5 .80 0.2330000 .021 0.2110000 2.16 122 2272 6 5.1 90.4 8.6 2 20 1JTK 15867 15599 0.0 -3.0 0.0790000 1 17.4 13.5 98.4 2.03 2.08 5.1 0.1950000 1 78.7 phasing EPMR refinement CNS 0.9 data collection MAR345 data scaling SCALEPACK Crystal structure of cytidine deaminase from Bacillus subtilis in complex with the inhibitor tetrahydrodeoxyuridine 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N The tetrameric cytidine deaminase is constructed from the two chains A and B and the two chains generated by the two-fold axis: -x+1,y,-z+2 A ASN 2 A ASN 2 HELX_P A ASP 15 A ASP 15 1 1 14 A ALA 47 A ALA 47 HELX_P A CYS 51 A CYS 51 5 2 5 A CYS 53 A CYS 53 HELX_P A GLU 65 A GLU 65 1 3 13 A CYS 86 A CYS 86 HELX_P A CYS 97 A CYS 97 1 4 12 A VAL 117 A VAL 117 HELX_P A LEU 121 A LEU 121 1 5 5 A SER 126 A SER 126 HELX_P A HIS 131 A HIS 131 1 6 6 B ASN 2 B ASN 2 HELX_P B ASP 15 B ASP 15 1 7 14 B ALA 47 B ALA 47 HELX_P B CYS 51 B CYS 51 5 8 5 B CYS 53 B CYS 53 HELX_P B GLU 65 B GLU 65 1 9 13 B CYS 86 B CYS 86 HELX_P B CYS 97 B CYS 97 1 10 12 B VAL 117 B VAL 117 HELX_P B LEU 121 B LEU 121 1 11 5 B SER 126 B SER 126 HELX_P B HIS 131 B HIS 131 1 12 6 metalc 2.355 A CYS 53 A SG CYS 53 1_555 A ZN 137 C ZN ZN 1_555 metalc 2.325 A CYS 86 A SG CYS 86 1_555 A ZN 137 C ZN ZN 1_555 metalc 2.339 A CYS 89 A SG CYS 89 1_555 A ZN 137 C ZN ZN 1_555 metalc 2.216 A ZN 137 C ZN ZN 1_555 A THU 138 D O4 THU 1_555 metalc 2.340 B CYS 53 B SG CYS 53 1_555 B ZN 137 E ZN ZN 1_555 metalc 2.329 B CYS 86 B SG CYS 86 1_555 B ZN 137 E ZN ZN 1_555 metalc 2.354 B CYS 89 B SG CYS 89 1_555 B ZN 137 E ZN ZN 1_555 metalc 2.241 B ZN 137 E ZN ZN 1_555 B THU 1138 F O4 THU 1_555 HYDROLASE cytidine deaminase, CDA, pyrimidine salvage pathway, HYDROLASE CDD_BACSU UNP 1 1 P19079 MNRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKAVSEGDTEFQMLAVAADTP GPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDLHDERKL 1 136 1JTK 1 136 P19079 A 1 1 136 1 136 1JTK 1 136 P19079 B 1 1 136 5 5 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A VAL 37 A VAL 37 A CYS 41 A CYS 41 A VAL 26 A VAL 26 A THR 32 A THR 32 A PHE 70 A PHE 70 A ALA 77 A ALA 77 A ILE 102 A ILE 102 A THR 106 A THR 106 A ILE 112 A ILE 112 A THR 116 A THR 116 B VAL 37 B VAL 37 B CYS 41 B CYS 41 B VAL 26 B VAL 26 B THR 32 B THR 32 B PHE 70 B PHE 70 B ALA 77 B ALA 77 B ILE 102 B ILE 102 B THR 106 B THR 106 B ILE 112 B ILE 112 B THR 116 B THR 116 BINDING SITE FOR RESIDUE ZN A 137 A ZN 137 Software 4 BINDING SITE FOR RESIDUE ZN B 137 B ZN 137 Software 4 BINDING SITE FOR RESIDUE THU A 138 A THU 138 Software 14 BINDING SITE FOR RESIDUE THU B 1138 B THU 1138 Software 14 A CYS 53 A CYS 53 4 1_555 A CYS 86 A CYS 86 4 1_555 A CYS 89 A CYS 89 4 1_555 A THU 138 D THU 4 1_555 B CYS 53 B CYS 53 4 1_555 B CYS 86 B CYS 86 4 1_555 B CYS 89 B CYS 89 4 1_555 B THU 1138 F THU 4 1_555 A PHE 24 A PHE 24 14 1_555 A VAL 26 A VAL 26 14 1_555 A ASN 42 A ASN 42 14 1_555 A GLU 44 A GLU 44 14 1_555 A CYS 53 A CYS 53 14 1_555 A ALA 54 A ALA 54 14 1_555 A GLU 55 A GLU 55 14 1_555 A PRO 85 A PRO 85 14 1_555 A CYS 86 A CYS 86 14 1_555 A CYS 89 A CYS 89 14 1_555 A ZN 137 C ZN 14 1_555 B ALA 46 B ALA 46 14 2_657 B ALA 47 B ALA 47 14 2_657 B TYR 48 B TYR 48 14 2_657 A ALA 46 A ALA 46 14 2_657 A ALA 47 A ALA 47 14 2_657 A TYR 48 A TYR 48 14 2_657 B PHE 24 B PHE 24 14 1_555 B VAL 26 B VAL 26 14 1_555 B ASN 42 B ASN 42 14 1_555 B GLU 44 B GLU 44 14 1_555 B CYS 53 B CYS 53 14 1_555 B ALA 54 B ALA 54 14 1_555 B GLU 55 B GLU 55 14 1_555 B PRO 85 B PRO 85 14 1_555 B CYS 86 B CYS 86 14 1_555 B CYS 89 B CYS 89 14 1_555 B ZN 137 E ZN 14 1_555 5 C 1 2 1